TCONS_00017570 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017570
Unique NameTCONS_00017570
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length612

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017570 ID=TCONS_00017570|Name=TCONS_00017570|organism=Clytia hemisphaerica|type=transcript|length=612bp
CTTTTTTATTCTGAGAAACACTGTGGGTTCACTGGATGTATAAAAAACGT
AAGTGCATTGACACTGATGACGCGCTTTTATTGTCTTTCTCTGGGACGAA
GCTTACAGAATATTATTGATGACATCTAGAAAAAGCAAAGCTGCGGCTAA
GAAGAGGGAAAATTCAAAAGAACGCTCAGATCATCGTATTCAAAGAAgtc
ttcaaaagaaaaatatatgttCTCAAAAACATTGATGTTGTTGTCCCACG
TGATCGAAAAGGGTATAAGGGTATAAATACTTGATGACATAATGCAGAAG
CAAATTATACATTGAAGAGTAAAGAGCTCTCGCAAATATCTTAACAACGA
AATACAACAAGAACATACTCAGagaaaagatgtttttcttcaCTAACAAG
CGACAAGTGATCAAAGATGTTGTTGACGCATTATCGCAACGTGATCAAGC
GCCACGTAGTACAAACTTAAAGAAAGACGACATTTTTAAACGGCAACCAC
CGTACAACCCACATTACACGACTGGCAACACAAGCAACAGAGGAAACCCC
CTTGCTGGAAATCGATCATTAAATACTACTGGTGGAGGCTTCCACTTTTA
TAGTAACATTTC
Run BLAST on NCBI

transcript from alignment at sc0000269:207617..208228

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017570 ID=TCONS_00017570|Name=TCONS_00017570|organism=Clytia hemisphaerica|type=transcript|length=612bp|location=Sequence derived from alignment at sc0000269:207617..208228 (Clytia hemisphaerica)
GAAATGTTACTATAAAAGTGGAAGCCTCCACCAGTAGTATTTAATGATCG
ATTTCCAGCAAGGGGGTTTCCTCTGTTGCTTGTGTTGCCAGTCGTGTAAT
GTGGGTTGTACGGTGGTTGCCGTTTAAAAATGTCGTCTTTCTTTAAGTTT
GTACTACGTGGCGCTTGATCACGTTGCGATAATGCGTCAACAACATCTTT
GATCACTTGTCGCTTGTTAGtgaagaaaaacatcttttctCTGAGTATGT
TCTTGTTGTATTTCGTTGTTAAGATATTTGCGAGAGCTCTTTACTCTTCA
ATGTATAATTTGCTTCTGCATTATGTCATCAAGTATTTATACCCTTATAC
CCTTTTCGATCACGTGGGACAACAACATCAATGTTTTTGAGaacatatat
ttttcttttgaagacTTCTTTGAATACGATGATCTGAGCGTTCTTTTGAA
TTTTCCCTCTTCTTAGCCGCAGCTTTGCTTTTTCTAGATGTCATCAATAA
TATTCTGTAAGCTTCGTCCCAGAGAAAGACAATAAAAGCGCGTCATCAGT
GTCAATGCACTTACGTTTTTTATACATCCAGTGAACCCACAGTGTTTCTC
AGAATAAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009827XLOC_009827Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017570-exon-sc0000269-1491911889:207617..208228TCONS_00017570-exon-sc0000269-1491911889:207617..208228Clytia hemisphaericaexon
TCONS_00017570-exon-sc0000269-1510915933:207617..208228TCONS_00017570-exon-sc0000269-1510915933:207617..208228Clytia hemisphaericaexon
TCONS_00017570-exon-sc0000269-1575043694:207617..208228TCONS_00017570-exon-sc0000269-1575043694:207617..208228Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:207617..208228 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.199353	0.0975181	28.3738	15.2916	4.86681	4.13242	9.56982	14.4267	5.44061	15.1852	4.91809	1.64169	1.59964	2.9505	11.4991	0.406421	2.71388	5.38599	8.93722	9.21673	2.1197	1.19298	1.79585	1.5184	0.120712	0	0.097711	0.099552
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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