TCONS_00017575 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017575
Unique NameTCONS_00017575
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length260

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017575 ID=TCONS_00017575|Name=TCONS_00017575|organism=Clytia hemisphaerica|type=transcript|length=260bp
TAACAATACATAAAAAGATTGCTCTATAGAAATACAAAATaagaaataac
attttcaatatcattttgctccttttatttctacaaatcCTTGATAAGAG
TTaataccattgagtttaaagtccTGAAGGGGCTAGAATTGAAACTCTTT
GATGGAATTAAAGCGTGATTTTCGCACAAACGGcaaattgaaagtaaaat
tactcgccagattttgaaaaatatgccgcGTGAAAATAAAGATAGCGATA
AATTGAATCA
Run BLAST on NCBI

transcript from alignment at sc0000269:344976..345235

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017575 ID=TCONS_00017575|Name=TCONS_00017575|organism=Clytia hemisphaerica|type=transcript|length=260bp|location=Sequence derived from alignment at sc0000269:344976..345235 (Clytia hemisphaerica)
TGATTCAATTTATCGCTATCTTTATTTTCACgcggcatatttttcaaaat
ctggcgagtaattttactttcaatttgCCGTTTGTGCGAAAATCACGCTT
TAATTCCATCAAAGAGTTTCAATTCTAGCCCCTTCAggactttaaactca
atggtattAACTCTTATCAAGgatttgtagaaataaaaggagcaaaatga
tattgaaaatgttatttcttATTTTGTATTTCTATAGAGCAATCTTTTTA
TGTATTGTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009831XLOC_009831Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017575-exon-sc0000269-1491911889:344976..345235TCONS_00017575-exon-sc0000269-1491911889:344976..345235Clytia hemisphaericaexon
TCONS_00017575-exon-sc0000269-1510915933:344976..345235TCONS_00017575-exon-sc0000269-1510915933:344976..345235Clytia hemisphaericaexon
TCONS_00017575-exon-sc0000269-1575043694:344976..345235TCONS_00017575-exon-sc0000269-1575043694:344976..345235Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:344976..345235 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.743301	0	4.42651	6.29619	43.8885	77.4349	78.0017	124.712	47.2223	31.9756	9.60531	12.6957	19.0113	20.4021	7.95256	11.1127	39.7777	92.8607	25.3889	32.5075	45.9152	59.8607	94.4478	210.731	198.036	161.394	747.752	437.257
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017575 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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