TCONS_00017576 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017576
Unique NameTCONS_00017576
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length598

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017576 ID=TCONS_00017576|Name=TCONS_00017576|organism=Clytia hemisphaerica|type=transcript|length=598bp
TCTAAAGTCTGTCAATGAGGACTCAAGTTCAGATTGATGTTCTTTCGGGA
AGCTGAAGCAATACCTAAACAAAGCGTAGGTGCAACGAATATTATGAATC
GTGTGATTAGCTTAATGGAACTTATAATCTTGTATCCCTGTTAATGATTA
TCAATGATTATCAATGAAATAGAGAATATCGCACTTGCAAACAAAGGCTT
ATAGTACAATTAATCAAATATGAAATATGAGGGGTAAGTTAACAATAATA
TCTTTCACACTCATCGGGTAAACATTGacgaaaaagaattcaaaaagtgt
tttgttttcaacatAATAATCCTCATCGTAAGAAACCTTTGTGAACTTCG
ATCTTTTTCATCACGAACGTCTCTCCATTTCTGTTCTTTTCTCAGGCAAA
GAGCAAAGACTCCAAGCATCTTGATGCCATCTTGTTGCCAGAGGCTGTCA
GCCAAAACTTTCAGACATTGGTCAATTGAATCTTTATCATCGTAGACTTT
TCTTTTGAACGCATCATACCTGGGATGATCTTAAGATAATCGTAAAGGAA
AAACAAGTTCAAAACGAAGTTAGTTTATCAGTGCAAATGTAATTAAGA
Run BLAST on NCBI

transcript from alignment at sc0000269:378939..379536

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017576 ID=TCONS_00017576|Name=TCONS_00017576|organism=Clytia hemisphaerica|type=transcript|length=598bp|location=Sequence derived from alignment at sc0000269:378939..379536 (Clytia hemisphaerica)
TCTTAATTACATTTGCACTGATAAACTAACTTCGTTTTGAACTTGTTTTT
CCTTTACGATTATCTTAAGATCATCCCAGGTATGATGCGTTCAAAAGAAA
AGTCTACGATGATAAAGATTCAATTGACCAATGTCTGAAAGTTTTGGCTG
ACAGCCTCTGGCAACAAGATGGCATCAAGATGCTTGGAGTCTTTGCTCTT
TGCCTGAGAAAAGAACAGAAATGGAGAGACGTTCGTGATGAAAAAGATCG
AAGTTCACAAAGGTTTCTTACGATGAGGATTATTatgttgaaaacaaaac
actttttgaattctttttcgtCAATGTTTACCCGATGAGTGTGAAAGATA
TTATTGTTAACTTACCCCTCATATTTCATATTTGATTAATTGTACTATAA
GCCTTTGTTTGCAAGTGCGATATTCTCTATTTCATTGATAATCATTGATA
ATCATTAACAGGGATACAAGATTATAAGTTCCATTAAGCTAATCACACGA
TTCATAATATTCGTTGCACCTACGCTTTGTTTAGGTATTGCTTCAGCTTC
CCGAAAGAACATCAATCTGAACTTGAGTCCTCATTGACAGACTTTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009832XLOC_009832Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017576-exon-sc0000269-1491911889:378939..379536TCONS_00017576-exon-sc0000269-1491911889:378939..379536Clytia hemisphaericaexon
TCONS_00017576-exon-sc0000269-1510915933:378939..379536TCONS_00017576-exon-sc0000269-1510915933:378939..379536Clytia hemisphaericaexon
TCONS_00017576-exon-sc0000269-1575043694:378939..379536TCONS_00017576-exon-sc0000269-1575043694:378939..379536Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:378939..379536 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0912024	0.177873	0	0.275287	0.368975	0.388758	0.377356	0.11667	0.474522	0.28559	0.739202	1.4504	0.485247	0.388826	0.428246	0.423514	0.849082	0.831977	0	0.531757	1.22634	0.561266	0.139391	0.557191	0.614723	0.968812	0.487923	0.441312	0.11734	0.152091
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017576 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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