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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017577 ID=TCONS_00017577|Name=TCONS_00017577|organism=Clytia hemisphaerica|type=transcript|length=1658bp
GAGCTGacttttttatcagattttatttATTCGCCAGCgtgaaattattt
tgtttttcttaaatcagAAGAAAATAATAAGAATGAATCTTGTAATATAT
AATGAACAAAACTGATCACCAAAAACATGATAATGAAGAAGAAATGACAC
CTAAAGAAGTCCCTAATCAaacagccaatcagattgcaagTTCTCAACAA
CCAACCAATCATATTGAAGCTTCAAACAATGGTCATGACATTGATGTCAT
GGTAACAAATGTGATTAAAGATGGTGGACAAGGGAACGGTCACAATATTT
TGAAGAATACATCACCTGAGAAGACAACTATCTCGTCGTCAACGAGTgac
gaaaatattttcagcagaATCGAAGTGGAAACAAGATCAGATCTCATTCA
ACAGaCAGTCAAGCAAATAGTGCAAGAGAGAATGGAGAAACtggaaaata
atttatttgaaGGTTTCAAGAAAGAGCTGAAGAGAATCAATGAAGAAAAT
GTGAATCTGAAGAGGAGGGAACGGACATTAAAAGGGCGAATCCAACTTCT
TGAAAGTAACCTAAAAGTGTCAACTGACAAATCCACCAACACCGAAGAAT
GCTCGTTaattcagaaaatgaaaattggaGATGAAAAAGCTCCTACAAAT
GAGCAAAAAGAGAGTGAAAACGAGGGCGATGAGATTTCAATTTCTCCTCG
AACTCGTATCGACCTTGCTGAAGATAAAATTCTACCTCTAACTTGTTCAC
CAAATTCTTCTAGCTCTTTGCGTGACGAAAACGATATCACACCTCTGGCG
CCCTCTGACGATAATTCGACCGTTATTGAAGTGGTAGAGACGTCACTGAG
CCGTGAAGAAACAAAAATAGAACTTGAGAACAGTGATGAATTGGTTATAG
ATGAGAAAATAGATATACCGGTTAAGGACAGTTCAACTGAAGAAAGTTGC
GTAGAAAAGACTTTGTCTATAAGCGATAAACCAATGACAATCGAACGTTT
TGATAAAGGAACAACTActaaagaaaataaaggaaCTTTCATAGAGGTTG
GTGATTTGAAGCATAGAGATGAAGAACTGGTCAATCAAAACGGTGCATTT
TTTCGATCAGCTGATCAGAAAGATGATAGATTAACACCTAGAGACCATGA
TATCGCATTAGCTAAACCAACCAATCAAGGTATTGCTTCAAATGAATCGA
CCAATGAGATTGAGGATATGTTATCACCTCGAATTTCTACATCAACATCA
TCCATCACTGCATCTGTGGAGACTGCGAATAATAATTTTGTGCCGGCAAT
GTTTCGATCATTGCCAACAATGGAGGTTAAACCATACCAACTAACAACAG
AACCTGAAAGGAAAGTCGAccaaattgtcgaaaaatacAAAGAGAGAAAC
TTAACAGCCGATAGGAATCCACCAGTTTTAGAGCCATCCAATCACAATCG
TTCTTATGCAGAAGCATCCAATCAAAATCATGCTTTTATTGAACCAGTCA
GTCAATACCAACCTTTGACCAGAGCTGTCAATCAGCAACCACCTTTCTCC
ATTACTTCCATAAACCCGAATGTTTCCATGGACAATACACCGAGATACAG
AATGAGAGGTCCCTCAAAGCGAGCCGCCAATTCAGAAGTATTCCCTGAAT
TTCAACAA Run BLAST on NCBI transcript from alignment at sc0000271:30452..33631+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017577 ID=TCONS_00017577|Name=TCONS_00017577|organism=Clytia hemisphaerica|type=transcript|length=3180bp|location=Sequence derived from alignment at sc0000271:30452..33631+ (Clytia hemisphaerica)
GAGCTGacttttttatcagattttatttATTCGCCAGCgtgaaattattt
tgtttttcttaaatcagAAGAAAATAATAAGAATGAATCTTGTAATATAT
AATGAACAAAACTGATCACCAAAAACATGATAATGAAGAAGAAATGACAC
CTAAAGAAGTCCCTAATCAaacagccaatcagattgcaagTTCTCAACAA
CCAACCAATCATATTGAAGCTTCAAACAATGGTCATGACATTGATGTCAT
GGTAACAAATGTGATTAAAGATGGTGGACAAGGGAACGGTCACAATATTT
TGAAGAATACATCACCTGAGAAGACAACTATCTCGTCGTCAACGAGTgac
gaaaatattttcagcagaATCGAAGTGGAAACAAGATCAGATCTCATTCA
ACAGGTATTTGTTTGAACAGCATTGTTCTTAATACGGTCTCTTGTGCAGG
TCATGAACACgcgacaatttcatgatttgtCCAAACTTAAAAGTGTCGCT
TACATTACATTattcatagatttataaagcccgaagggctagatggcgta
cttttgctgaaaagtgtgccgtggttaggtaggaaatcctgtctaaatca
cgtgacattacaatagaatttcagcgcttgaccaatcagaagcttcgcgg
gttttcgaaaacaatagctacaatatattttccgatattcacttcttTCT
GTCTGTGATTGCTTAAAGCATGACATCTAGTCCTCTTCAGGCTTTATATC
TATGGTTATATTCCCCAAGGTCTCTTTGAAACTTGGTGAACGTGTAAGTA
AAGGTACATTCCACTCGTAGGTGCCCAGGACATCTCTGGTGGTCTATTTT
ATAGTGACTTGGCAGAAGAATAATTCCAACTTCAAATTGAGATAAGGATC
TACAGGTTGTTCATAGAAAAACTTACCTTCATTGTCTTTcaaaccatagt
cattataaaaaaccctggtctggtaATGTATTGTTTTGGCTTTATTGTTC
AACTTTCTTTTGTTGTAAATAAAaggcaagttgcgatttgcatacttttt
tatCACGTTACCATAATcccctcttgggattggttagTTTTAtaaatcac
atgatcaaaaactatgcaaaacaaatcaatttaAGGTACGCAAGCTCTAA
CGGTTgataatacagggtgtccctaataaaagtatcgagtttgaacatgc
gattgagtaaaaaagtttgtgtgtgttatcgctaaaatataataacgttc
tccatcacataggctcattacaaaaggtagttacaacNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNaagagggagagcttaaaatac
aattttgtgaatacacacttaaaactttctactcaatcgcatgttcaaac
tcgatacttttattagggacaccctgtagaaagAAACTGAAGGAGAAGCC
TTCCATACCGgggtttttataatgactatgttCAAACATCAAGTCAATTT
CGACTCCAATCATGGCTTCTAAGCTATAAATAACCTTATGTTTTATAATC
TGTATCTTTCGCAAAAAGAGAAATATTCATCCTCCAAGTACTAGTGAATG
CTCGAAAACAACCTCCCTCAAAAAGTcattcatttttaatttcagaCAGT
CAAGCAAATAGTGCAAGAGAGAATGGAGAAACtggaaaataatttatttg
aaGGTTTCAAGAAAGAGCTGAAGAGAATCAATGAAGAAAATGTGAATCTG
AAGAGGAGGGAACGGACATTAAAAGGGCGAATCCAACTTCTTGAAAGTAA
CCTAAAAGTATGAcaatctttttgtctttttgtcttTCATTTAAAAACTG
AGTTTATTAAAAATCCATACAGGGgagtggacgaaccttttcaaatccga
aaaaaattcttgaaaatatttttatactcCCTGGAAAATGGCGAAATTTG
TAAAGAAAACGTTGGAAATTTCTTTTCGTAGCTTAAACGTGACGGTGGac
aaactaaaatcagtctaaaaaatggaatggcccaattaaCAGACAAAGGA
AATGAAATTATAACAAATTTCTCTATTCCCTTCTTCAGGTGTCAACTGAC
AAATCCACCAACACCGAAGAATGCTCGTTaattcagaaaatgaaaattgg
aGATGAAAAAGCTCCTACAAATGAGCAAAAAGAGAGTGAAAACGAGGGCG
ATGAGATTTCAATTTCTCCTCGAACTCGTATCGACCTTGCTGAAGATAAA
ATTCTACCTCTAACTTGTTCACCAAATTCTTCTAGCTCTTTGCGTGACGA
AAACGATATCACACCTCTGGCGCCCTCTGACGATAATTCGACCGTTATTG
AAGTGGTAGAGACGTCACTGAGCCGTGAAGAAACAAAAATAGAACTTGAG
AACAGTGATGAATTGGTTATAGATGAGAAAATAGATATACCGGTTAAGGA
CAGTTCAACTGAAGAAAGTTGCGTAGAAAAGACTTTGTCTATAAGCGATA
AACCAATGACAATCGAACGTTTTGATAAAGGAACAACTActaaagaaaat
aaaggaaCTTTCATAGAGGTTGGTGATTTGAAGCATAGAGATGAAGAACT
GGTCAATCAAAACGGTGCATTTTTTCGATCAGCTGATCAGAAAGATGATA
GATTAACACCTAGAGACCATGATATCGCATTAGCTAAACCAACCAATCAA
GGTATTGCTTCAAATGAATCGACCAATGAGATTGAGGATATGTTATCACC
TCGAATTTCTACATCAACATCATCCATCACTGCATCTGTGGAGACTGCGA
ATAATAATTTTGTGCCGGCAATGTTTCGATCATTGCCAACAATGGAGGTT
AAACCATACCAACTAACAACAGAACCTGAAAGGAAAGTCGAccaaattgt
cgaaaaatacAAAGAGAGAAACTTAACAGCCGATAGGAATCCACCAGTTT
TAGAGCCATCCAATCACAATCGTTCTTATGCAGAAGCATCCAATCAAAAT
CATGCTTTTATTGAACCAGTCAGTCAATACCAACCTTTGACCAGAGCTGT
CAATCAGCAACCACCTTTCTCCATTACTTCCATAAACCCGAATGTTTCCA
TGGACAATACACCGAGATACAGAATGAGAGGTCCCTCAAAGCGAGCCGCC
AATTCAGAAGTATTCCCTGAATTTCAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017577-exon-sc0000271-1491911889:30452..30855 | TCONS_00017577-exon-sc0000271-1491911889:30452..30855 | Clytia hemisphaerica | exon |
| TCONS_00017577-exon-sc0000271-1510915933:30452..30855 | TCONS_00017577-exon-sc0000271-1510915933:30452..30855 | Clytia hemisphaerica | exon |
| TCONS_00017577-exon-sc0000271-1575043694:30452..30855 | TCONS_00017577-exon-sc0000271-1575043694:30452..30855 | Clytia hemisphaerica | exon |
| TCONS_00017577-exon-sc0000271-1491911889:32097..32258 | TCONS_00017577-exon-sc0000271-1491911889:32097..32258 | Clytia hemisphaerica | exon |
| TCONS_00017577-exon-sc0000271-1510915933:32097..32258 | TCONS_00017577-exon-sc0000271-1510915933:32097..32258 | Clytia hemisphaerica | exon |
| TCONS_00017577-exon-sc0000271-1575043694:32097..32258 | TCONS_00017577-exon-sc0000271-1575043694:32097..32258 | Clytia hemisphaerica | exon |
| TCONS_00017577-exon-sc0000271-1491911889:32540..33631 | TCONS_00017577-exon-sc0000271-1491911889:32540..33631 | Clytia hemisphaerica | exon |
| TCONS_00017577-exon-sc0000271-1510915933:32540..33631 | TCONS_00017577-exon-sc0000271-1510915933:32540..33631 | Clytia hemisphaerica | exon |
| TCONS_00017577-exon-sc0000271-1575043694:32540..33631 | TCONS_00017577-exon-sc0000271-1575043694:32540..33631 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000271 | supercontig | sc0000271:30452..33631 + |
Blast
The following BLAST results are available for this feature:
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