TCONS_00017581 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017581
Unique NameTCONS_00017581
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1423

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017581 ID=TCONS_00017581|Name=TCONS_00017581|organism=Clytia hemisphaerica|type=transcript|length=1423bp
ATTTTCATATGCTAAAAAATGACATCTTgataacaaaaaatttaaaattt
ttagaatcatttacaaaatcaaacaattttgaGCCATTTTGAACAAgtca
aaaactttgaatttgagTATCAAATTATGATCAAATTTCAAGACAAACGT
TAGATTTTATTTGTCCAGCTTTTCAGCTGATCGCGTTTCGGGTGGTCAAT
AAAAAGGGTGGAGTTCAAGTGTCTCCTCATCAGTTCAAACTCGGCATcaa
atttggaagaaaaaacaaaagaattaccAAGGAAGAAAGGTTTCAGGGAA
GATTCTGTCAAGATACAGCATGAAGTTACAGAGCATGTTGGCCATTGCCT
TTACGTTGGTTGTTTTTGCAGAGGCTTATAATTTCAATCATGATATGGGC
GCTAAATTAGATGGGCGTATTATCCACGTGGAGTCGTTGAGATATAGAGG
TCATTGGTTGAAATCATCGTTTCACAACGGTGGTAAATGGATTGCTGTTT
ATGGATTGGCTCAAAGAGATACCTATTATACACAATGGTCGCAATTTAAG
GTCAAACACGTGGGAGGTGGTAAGGTGACGATCGAATCAATGACCTATCC
ACACCACTACTTTGACTCTCATTACTCTGGATGGGTTGGGACTACTTACT
CCACATACCCTGATAATCAGGCTTGGGCTCAATGGAAAATTTATTGCACC
AGTCAATCAATGGATGTTTGTCGTTTTGAATCGATGAGATATCGAGGACA
TTACTTCGACTCCAGTCACACCGGAGGTCTTGGAGTTGCAAGATATGGCA
ATGGTTGGTCAAGGTTCCGAATTTTAGCACCAAACGCTGAAGATTACTAT
GTGACAATCCTTTCTACAGAGAATCACAGCAGTGCTTCATCCAAGAAAAC
ATTAACAGTTGAAGAAGGGGTGATTGACTCAACAACCACCGAAAATACCA
TCACCACCTCTGTCTCTGTTGAAGTTCAAAAAGCTTTCGTCACTGCATCA
GCCTCCGTTACTCATGAATGGAAGCAAACTGAATCGAAGACATTCGAGAA
ACGAACCTCATTCACATACGAAGTTCCCATCCCTGCTCGTTCAAAGATCG
AGGTCAAACAACTAACCGGTGAATACGGTCCTTTCCGAATCAAAGTCAAC
AAATTCATCATTAAAGAAACGAAACTCGATGGACGCAAACGTGGACTTAT
CGAAGAATTTGACGGATACTTGATTGACTACTAAAAAGGAAATTCTCCAC
CCAATTTGATATGAAATCGTAAACTCATTTCAGAGGAGCTGTATTTCGAA
TTATATATCTTTCTTGACTTGTAATATTTGTTAGCGTTCTACTTTGCTAA
AATATGACTTTTAGATAATGGACATGCTCATTTATTTGATTGACCTTTCC
CTGTTTTTAAGAGTTTCCATCAC
Run BLAST on NCBI

transcript from alignment at sc0000271:47761..53406+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017581 ID=TCONS_00017581|Name=TCONS_00017581|organism=Clytia hemisphaerica|type=transcript|length=5646bp|location=Sequence derived from alignment at sc0000271:47761..53406+ (Clytia hemisphaerica)
ATTTTCATATGCTAAAAAATGACATCTTgataacaaaaaatttaaaattt
ttagaatcatttacaaaatcaaacaattttgaGCCATTTTGAACAAgtca
aaaactttgaatttgagTATCAAATTATGATCAAATTTCAAGACAAACGT
TAGATTTTATTTGTCCAGCTTTTCAGCTGATCGCGTTTCGGGTGGTCAAT
AAAAAGGGTGGAGTTCAAGTGTCTCCTCATCAGTTCAAACTCGGCATcaa
atttggaagaaaaaacaaaagaattaccAAGGAAGAAAGGTTTCAGGTAC
GTTTTAAGCGTCGTCTGACAAATTGAAATTCAGTTtaaaaaacctaaatt
taacgAAATACTACAGGCACTTacgaattcttttttttaaattcacttgt
aaaatgttttcaaatttataaaatCCACGCAAGTGGTCGCATCTTAAAAT
TATGAAAGCTACCTTAGGGAAACTAATTGTAACGGGatctgattttaaaa
ataaaaggtaCCTGGATTTCCTAGGTAGttgcaatttttattttttacta
cGATAACTCTGGTTTAGACTGTGCTCCTCCTTGATGTTTATGGAGGGTGA
AAATTTCACTGTCATCGTCAAACATTTAATCGCCCGTGCTATTTATGTTT
ATGTGTTTTTTAATTAGTATTCTCAGTAGACTTTTAGTTTTCACGTGTCC
CTCGCATCAGTgtctctttgttttgattttctttagtATTCTCAAATTGC
TTTTCAATATATCATCCGTCATTTCTCTAGAGAAATTAGGATATGTTTAT
TAACTATAAGCTTAGTTCAACGTTGACAGACGAGATTGTCTCGTGTGTGA
GAAAGAGGTGGATGTGTTTTATTTAAAGTagcattttacattttttgttt
tccgACTTCTTGTTGGTTTAATTCGATAATTTTTAATCTCTGGAATGGTA
TTTAACAGATTTCAGTCCTTTTTGACGACTGACCATATATTCATAAATTG
GATAACGAACTATAAATATCTTTCAGGGAAGATTCTGTCAAGATACAGCA
TGAAGTTACAGAGCATGTTGGCCATTGCCTTTACGTTGTAAGTAGATATT
CAGTAAAAATGTTTTCCTGTTTATTCACCGGATTTTAGACTCTACTGTAA
TCCCCAAAAACTTTCAGACACTATAGAGACTTTATGTTGTATTTTCGCCG
TCTAAGTCAGGGAGGAATATTTCACTATTTTTTAATCCATCCAAAAACGT
TTGGCTTTCTGTTCCTTTAAGCCAACATTATTTGAAGGCACTGCTCTTGA
TTTTCTCTGTGCAGGGTTGTTTTTGCAGAGGCTTATAATTTCAATCATGA
TATGGGCGCTAAATTAGATGGGCGTATTATCCACGTGGAGTCGTTGAGAT
ATAGAGGTCATTGGTTGAAATCATCGTTTCACAACGGTGGTAAATGGATT
GCTGTTTATGGATTGGCTCAAAGAGATACCTATTATACACAATGGTCGCA
ATTTAAGGTGAGCAACTATTAATTTTCACATGTGTTTTCTCAGAAAGATG
CCCCCCCCCCGACAATGTCATCaaacttttcgaaatttaatCTAGTTACA
TTGTGTCATCAATAATGTTATGACCTATTTTTGTGGTCTTTTCGCAAAAA
TACGGGTGAAAGCAATTAAAGTCTGTCACAAAAATTGGAAGTTTGTGCTT
TTGAGCATTAACATAATGCACTTAGAATTATTTTTCCAACGAGGAATTTC
TTTGAATTCCATCTTTTTTTCAGTTGAGagtaatctttaaaaaagattct
ttgaaaCTGACTTGACGTTATAGTTTCCAGAGTGGAAAAACATACACTCT
TTTTACTTTATACGCATCgcacttataagcatacgcAGGCTCAGATGAGG
CAAAAATATAAGCGTATGCTAAgccttcattttcagattttgcctgtttt
tggctgaattttatgtttttcgGTATTTCTCTAAAACATTGCCTATGATT
TAAGCAtctttgaaagctttttttACAGCCTTCTCAAGCCTTAAGCATCT
CCAAacctttcaaatttttgtatgcttataaaaatacatTTATCCTTCGT
GTTCAGTCATTTGGTTTGTTCGACAGGCTAATGTGTGTTCCTTAAAATTA
TAATTGActcttaacatttttgaaacGACCCATTTTATCAAAGTCACCTT
TCGAAATTTACGATATTCATGCCGTATTTTTCACTAGTTTTgttgttaaa
aaattcaaaaatagtgGTAAAAACCTGGTCTTTTGGGGTGCTTCCCTCTG
AAGCATTATGTCATAAATAACACGACATTATTTTCATACAGGTCAAACAC
GTGGGAGGTGGTAAGGTGACGATCGAATCAATGACCTATCCACACCACTA
CTTTGACTCTCATTACTCTGGATGGGTTGGGACTACTTACTCCACATACC
CTGATAATCAGGTTTGTTAGTGTTTTGACTAAATAACATGCACgtcccga
atagtagggggTCAGAATAAAAGGAGGgtccaaatatttttttaaatctt
ataaACAGAGGGAGNAGCATTAACATAATGCACTTAGAATTATTTTTCCA
ACGAGGAATTTCTTTGAATTCCATCTTTTTTTCAGTTGAGagtaatcttt
aaaaaagtacTAATTCTTTGAAACAGACATGACGTTATAGTTTCCAGAGT
GGAAAAACATACACTCTTTTTACTTTATACGCATCgcacttataagcata
cgcAGGCTCAGATGAGGCAAAAATTTAAGCGTATGCTAAgccttcatttt
cagattttgcttgtttttggctgaattttatgtttttcgGTATTTCTCTA
AAACATTGCCTATGATTTAAGCAtctttgaaagctttttttACAGCCTTC
TCAAGCCTTAAGCATCTCCAAacctttcaaatttttgtatgcttataaaa
atacatTTATCCTTCGTGTTCAGTCATTTGGTTTGTTCGACAGGCTAATG
TGTGTTCCTTAAAATTATAATTGActcttaacatttttgaaacGACCCAT
TTTATCAAAGTCACCTTTCGAAATTTACGATATTCATGCCGTATTTTTCA
CTAGTTTTgttgttaaaaaattcaaaaatagtgGTAAAAACCTGGTCTTT
TGGGGTGCTTCCCTCTGAAGCATTATGTCATAAATAACACGACATTATTT
TCATACAGGTCAAACACGTGGGAGGTGGTAAGGTGACGATCGAATCAATG
ACCTATCCACACCACTACTTTGACTCTCATTACTCTGGATGGGTTGGGAC
TACTTACTCCACATACCCTGATAATCAGGTTTGTTAGTGTTTTGACTAAA
TAACATGCACGTCTCGAATAGTAGGGGGTCAGAATAAAAGGAGGgtccaa
atatttttttaaatcttataaACAGAGGGAGTTCGAAATTACACCCCAAA
AActccaaaataaggtaattataaGCTAAAAACAGGCTTAGAGCAATTTA
GCCTGTATTAACcgaaagtattttcaaaaatatataaacggggacctaaa
aattttattgaaagttAATAACTAGGTGGGGACGTTTGTTCGGGACCTTA
GAGCAATGTCATTACTCTGACTAGTACATTCCCGTGTTGTTGATACCCCT
GTCTCAGCCATCTTACAAAAATTTGATGCCAGTTGGAAGTTAAATACAGA
CGACGATAGAAAAGCATGTTTTAGTAAGGGGAATCTTCAGCTTTGTTTAT
ACTACCGTGTAAATCATTGTATTTAAcatcttaaaaattattttgtatat
AATGAAAGGCTTGGGCTCAATGGAAAATTTATTGCACCAGTCAATCAATG
GATGTTTGTCGTTTTGAATCGATGAGATATCGAGGACATTACTTCGACTC
CAGTCACACCGGAGGTCTTGGAGTTGCAAGATATGGCAATGGTTGGTCAA
GGTTCCGAATTTTAGCACCAAACGCTGAAGATTACTATGTGTGAGTTCTA
GTTCTTCTGTTTTATTCTCCTCAGCTTGGAAATATTTACTTACATAGCAC
CTCTAACCTTTCTCCCACTCCCATGTAAAGTGAGCAAAAATTTTAAGCAG
TATCAGAGGCACGCCTCCttttctatatcataaaaacCAACTATGTTCAC
TTAAAAGTCCTATCTATACcgtttttgagagctttcgattgGTATAAGTG
GTTTCGGGTTTTATTGACCTTGAAATTTCTTCAAATGCctgtgacgtcag
tttttgGGTCCTAAAAAAATTCCCAGACGTAAGCAAACAACCCCCTTCGC
GGAAATCCCTTTAGATTTCCATACATTGAAATGGACCAGGTTTGGTTGCG
TAGCATAAAAGTTGGCACGGGTCCTAAGGGTTTGCCCCCTATTACCATAA
GGACAAACAAACAGACTGCGTTTGTTTCAGATGATGAATATCCGGCTGGT
TTTTTGTACTGCTCAAAATCATAACAATAGTTTTATCCCACGTTTGAGAA
TCTCCAAGATAACCGCGTTCAGCTACAATACTACAAtatataaaacaatt
tttttttccttcgcAGGACAATCCTTTCTACAGAGAATCACAGCAGTGCT
TCATCCAAGAAAACATTAACAGTTGAAGAAGGGGTGATTGACTCAACAAC
CACCGAAAATACCATCACCACCTCTGTCTCTGTTGAAGTTCAAAAAGCTT
TCGTCACTGCATCAGCCTCCGTTACTCATGAATGGAAGGTGTGCTAAACG
TTTTTCACTGACCTTTTTTATAAAAGTCTAATTCCGGCCTAGGAAAATCT
TtcaatcggattttttttttaaaaatgtaactACTGCATAATAGCGGTGC
AACGCTTCGAAAGCGGTAGATCTACTTTTCTATGCGAAATTGCGATGTTG
CGCCATTTGATGTTTTAACACTCCAAtgggcttctttacgggtacctcTT
TCATAAAAATTCCGACCAAAGATGGCagaatataatttgtataaagGTTG
GTGGATTTTCCCTATCAAGGTCTATTCATAAACTCTATTTTAGCCCTAAT
GTTATTTCCTCTACCTGGATCTCAAATCTCAAAGTTTATACAAACTGGtt
ccttgaaaaataaaagattattCGATTGGCCTTTAAATAAAGTGGCCTGG
ATGTTTTAACCTTTAATCTTTTAAGGATTGGAAATTCAGATATCTACTTT
TTTAGGAGTTTAAGGGTTAATTCCACAACCTTTTCTTCATTTAACAGCAA
ACTGAATCGAAGACATTCGAGAAACGAACCTCATTCACATACGAAGTTCC
CATCCCTGCTCGTTCAAAGATCGAGGTCAAACAACTAACCGGTGAATACG
GTCCTTTCCGAATCAAAGTCAACAAATTCATCATTAAAGAAACGAAACTC
GATGGACGCAAACGTGGACTTATCGAAGAATTTGACGGATACTTGATTGA
CTACTAAAAAGGAAATTCTCCACCCAATTTGATATGAAATCGTAAACTCA
TTTCAGAGGAGCTGTATTTCGAATTATATATCTTTCTTGACTTGTAATAT
TTGTTAGCGTTCTACTTTGCTAAAATATGACTTTTAGATAATGGACATGC
TCATTTATTTGATTGACCTTTCCCTGTTTTTAAGAGTTTCCATCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009834XLOC_009834Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017581-exon-sc0000271-1491911889:47761..48056TCONS_00017581-exon-sc0000271-1491911889:47761..48056Clytia hemisphaericaexon
TCONS_00017581-exon-sc0000271-1510915933:47761..48056TCONS_00017581-exon-sc0000271-1510915933:47761..48056Clytia hemisphaericaexon
TCONS_00017581-exon-sc0000271-1575043694:47761..48056TCONS_00017581-exon-sc0000271-1575043694:47761..48056Clytia hemisphaericaexon
TCONS_00017581-exon-sc0000271-1491911889:48787..48847TCONS_00017581-exon-sc0000271-1491911889:48787..48847Clytia hemisphaericaexon
TCONS_00017581-exon-sc0000271-1510915933:48787..48847TCONS_00017581-exon-sc0000271-1510915933:48787..48847Clytia hemisphaericaexon
TCONS_00017581-exon-sc0000271-1575043694:48787..48847TCONS_00017581-exon-sc0000271-1575043694:48787..48847Clytia hemisphaericaexon
TCONS_00017581-exon-sc0000271-1491911889:49075..49267TCONS_00017581-exon-sc0000271-1491911889:49075..49267Clytia hemisphaericaexon
TCONS_00017581-exon-sc0000271-1510915933:49075..49267TCONS_00017581-exon-sc0000271-1510915933:49075..49267Clytia hemisphaericaexon
TCONS_00017581-exon-sc0000271-1575043694:49075..49267TCONS_00017581-exon-sc0000271-1575043694:49075..49267Clytia hemisphaericaexon
TCONS_00017581-exon-sc0000271-1491911889:50102..50221TCONS_00017581-exon-sc0000271-1491911889:50102..50221Clytia hemisphaericaexon
TCONS_00017581-exon-sc0000271-1510915933:50102..50221TCONS_00017581-exon-sc0000271-1510915933:50102..50221Clytia hemisphaericaexon
TCONS_00017581-exon-sc0000271-1575043694:50102..50221TCONS_00017581-exon-sc0000271-1575043694:50102..50221Clytia hemisphaericaexon
TCONS_00017581-exon-sc0000271-1491911889:51569..51750TCONS_00017581-exon-sc0000271-1491911889:51569..51750Clytia hemisphaericaexon
TCONS_00017581-exon-sc0000271-1510915933:51569..51750TCONS_00017581-exon-sc0000271-1510915933:51569..51750Clytia hemisphaericaexon
TCONS_00017581-exon-sc0000271-1575043694:51569..51750TCONS_00017581-exon-sc0000271-1575043694:51569..51750Clytia hemisphaericaexon
TCONS_00017581-exon-sc0000271-1491911889:52327..52498TCONS_00017581-exon-sc0000271-1491911889:52327..52498Clytia hemisphaericaexon
TCONS_00017581-exon-sc0000271-1510915933:52327..52498TCONS_00017581-exon-sc0000271-1510915933:52327..52498Clytia hemisphaericaexon
TCONS_00017581-exon-sc0000271-1575043694:52327..52498TCONS_00017581-exon-sc0000271-1575043694:52327..52498Clytia hemisphaericaexon
TCONS_00017581-exon-sc0000271-1491911889:53008..53406TCONS_00017581-exon-sc0000271-1491911889:53008..53406Clytia hemisphaericaexon
TCONS_00017581-exon-sc0000271-1510915933:53008..53406TCONS_00017581-exon-sc0000271-1510915933:53008..53406Clytia hemisphaericaexon
TCONS_00017581-exon-sc0000271-1575043694:53008..53406TCONS_00017581-exon-sc0000271-1575043694:53008..53406Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000271supercontigsc0000271:47761..53406 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
119.671	128.747	106.919	118.193	5.35564	3.94996	0.567317	0.531115	0	0.736946	0	0.0587761	0.252666	0	0	0	1.92129	1.96926	0.1861	0.0792478	3.15714	3.1215	51.303	40.9381	0.663308	0.591956	1.81519	1.67892	23.6069	24.4509
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017581 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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