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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017590 ID=TCONS_00017590|Name=TCONS_00017590|organism=Clytia hemisphaerica|type=transcript|length=1933bp
TGCATTAATAATGGAGTagtacattttgagatttcttcgctttgcgaaaa
cagaacgctcgttccgcaaccccttttatgttgattctttttttatctat
tGGAAAGGGTAACACGATTAGAATATGGTATCAAATTTCCTGAATATTGt
acaaaattatatattttttaaaacaaaatacatgctgaaattctctgtat
tTTATATTGTATTCCAGGAACACAGATATTATTGTTCAACCCAATCTGCT
TGGTTGGATACACATATGCAAGCTGGACATTCTTTAACGAGCGAATTTTT
GATGAAGAAGCCTACCTGCTGGACTTCTTCGGTGAAGATTATGCTGTTTA
CATGAAGAACGTTGCTACGGGAATTCCTTTTATTTATGGATGTGAAAGCT
TTATCAAGTATGACTAGAATTAGTAGCTTGGTATGATGGTGATAATTGAT
AGGTAGAGAGGCTACTTTGAAGATGTTTAAGGGAGTTTCTAAATGGTTAA
GGTCATTTAGATTGGATTCTTAAGATCGCCGTTCTCATGACAATTTAGTG
CTTTAGAATAGTAATATTTATACTGTGACTTTTATCTTCGATATGCAACT
GGATTCAATTTCAGATTTTAAACTTGTCTTAATGCATTTCATTGAATATT
ATTCCAGTTATTAAGGCAAAAATGGGTACAGGGACTTGCTACTACACACC
TGgcagatttcaaaataatgaaGCTTCAAGGTGGCATTGATAGGGTTGGT
ATAACTTTATTAGGGCAGATCGTCAACAGCCAAgttgtattgtttttttt
ttgtgaagaTTGGGAGGCTTTCTGCGCAATTTTCAAGGTCATAATCCAGT
ATTCCCAAGGGAGGTCCTGAATCTTCCTGAAGGCAAAACTTAGGGAAAAt
ggcattttaaagcttttttaggcctgtaaatatttcaaaataatcgCAAA
TCTTGTCTTTTTTATTGTACTGTCAGCTGTAGCAGCATTTGTTGTACTGA
ATttcataagaaaaaaaaaagtaaaataaaaggtAAAATAAAGCAAAATC
ATGCCAGTCTTTTTTTGAGGCAAGCTTCTATCAAATGAGTTTAAATTTTG
ACCCAAATAAATACTACACTTCATATTTTCCGACTTTCCGTTTCGACGAT
CTACCCTAGCTTCATGTTTTGCTTGACAGGGTCAGCTTTTTGTCATCgtt
gcaaaaatttgcaaaaatcaaGAATTCGGCCaagtttcatttcaaaattt
gtctCAGTAGAACGACTCTATCTCTTCAGATGTGATTTTCAAACATTGCC
TATTTGTTTTGGCTAACAAACCATGCTAAACAAGCTTAATTTTAAAGTAT
TCTCTTGTATTTTGCTTTATTTATTATGTCAATAAAGTTGTTTATATTTT
AAAACTAGATTTTATCCTAACTTTGGGAAGTTTAACTCCAATGTCTTTAT
TCTCAGATGCCTAATAATTAAAGGTGGGGAAAATAGATATACTATTTTCA
AACTCACTATTTTCACACTCGCTCACTTACGTGCAGGAGGTTTGGAAATT
ATTCTTCTAAATAAATACCTGAAAATAAGTTAAATTTGAAATTAGCTTTT
TAactaaaaatcatgaatttgtcagcagaaaatgaaaacatcgAAAAATT
ACCAGTGGGTTTGGCTCATTATGAGGCACCTGAGACTATAATAAACTGTT
TTCTTGACTATTTATCGTCATTAATTCAATATAATCGAAGCTTTGTGTAG
AAATaggtttcattgttttaaaagaGTTTAGGAAAGTTTTTAACTGCACG
TTTTTTAGACAGTCACTGTTGATACATAAACAGAAACTGCCACGAcattt
tttattgtaaattgttagaaaaaatataGATCTTTTAACATTATTTTATA
TTGTTTCCTATTGATTCTTTTTGAATTGTCATT Run BLAST on NCBI transcript from alignment at sc0000271:109305..111237+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017590 ID=TCONS_00017590|Name=TCONS_00017590|organism=Clytia hemisphaerica|type=transcript|length=1933bp|location=Sequence derived from alignment at sc0000271:109305..111237+ (Clytia hemisphaerica)
TGCATTAATAATGGAGTagtacattttgagatttcttcgctttgcgaaaa
cagaacgctcgttccgcaaccccttttatgttgattctttttttatctat
tGGAAAGGGTAACACGATTAGAATATGGTATCAAATTTCCTGAATATTGt
acaaaattatatattttttaaaacaaaatacatgctgaaattctctgtat
tTTATATTGTATTCCAGGAACACAGATATTATTGTTCAACCCAATCTGCT
TGGTTGGATACACATATGCAAGCTGGACATTCTTTAACGAGCGAATTTTT
GATGAAGAAGCCTACCTGCTGGACTTCTTCGGTGAAGATTATGCTGTTTA
CATGAAGAACGTTGCTACGGGAATTCCTTTTATTTATGGATGTGAAAGCT
TTATCAAGTATGACTAGAATTAGTAGCTTGGTATGATGGTGATAATTGAT
AGGTAGAGAGGCTACTTTGAAGATGTTTAAGGGAGTTTCTAAATGGTTAA
GGTCATTTAGATTGGATTCTTAAGATCGCCGTTCTCATGACAATTTAGTG
CTTTAGAATAGTAATATTTATACTGTGACTTTTATCTTCGATATGCAACT
GGATTCAATTTCAGATTTTAAACTTGTCTTAATGCATTTCATTGAATATT
ATTCCAGTTATTAAGGCAAAAATGGGTACAGGGACTTGCTACTACACACC
TGgcagatttcaaaataatgaaGCTTCAAGGTGGCATTGATAGGGTTGGT
ATAACTTTATTAGGGCAGATCGTCAACAGCCAAgttgtattgtttttttt
ttgtgaagaTTGGGAGGCTTTCTGCGCAATTTTCAAGGTCATAATCCAGT
ATTCCCAAGGGAGGTCCTGAATCTTCCTGAAGGCAAAACTTAGGGAAAAt
ggcattttaaagcttttttaggcctgtaaatatttcaaaataatcgCAAA
TCTTGTCTTTTTTATTGTACTGTCAGCTGTAGCAGCATTTGTTGTACTGA
ATttcataagaaaaaaaaaagtaaaataaaaggtAAAATAAAGCAAAATC
ATGCCAGTCTTTTTTTGAGGCAAGCTTCTATCAAATGAGTTTAAATTTTG
ACCCAAATAAATACTACACTTCATATTTTCCGACTTTCCGTTTCGACGAT
CTACCCTAGCTTCATGTTTTGCTTGACAGGGTCAGCTTTTTGTCATCgtt
gcaaaaatttgcaaaaatcaaGAATTCGGCCaagtttcatttcaaaattt
gtctCAGTAGAACGACTCTATCTCTTCAGATGTGATTTTCAAACATTGCC
TATTTGTTTTGGCTAACAAACCATGCTAAACAAGCTTAATTTTAAAGTAT
TCTCTTGTATTTTGCTTTATTTATTATGTCAATAAAGTTGTTTATATTTT
AAAACTAGATTTTATCCTAACTTTGGGAAGTTTAACTCCAATGTCTTTAT
TCTCAGATGCCTAATAATTAAAGGTGGGGAAAATAGATATACTATTTTCA
AACTCACTATTTTCACACTCGCTCACTTACGTGCAGGAGGTTTGGAAATT
ATTCTTCTAAATAAATACCTGAAAATAAGTTAAATTTGAAATTAGCTTTT
TAactaaaaatcatgaatttgtcagcagaaaatgaaaacatcgAAAAATT
ACCAGTGGGTTTGGCTCATTATGAGGCACCTGAGACTATAATAAACTGTT
TTCTTGACTATTTATCGTCATTAATTCAATATAATCGAAGCTTTGTGTAG
AAATaggtttcattgttttaaaagaGTTTAGGAAAGTTTTTAACTGCACG
TTTTTTAGACAGTCACTGTTGATACATAAACAGAAACTGCCACGAcattt
tttattgtaaattgttagaaaaaatataGATCTTTTAACATTATTTTATA
TTGTTTCCTATTGATTCTTTTTGAATTGTCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017590-exon-sc0000271-1491911889:109305..111237 | TCONS_00017590-exon-sc0000271-1491911889:109305..111237 | Clytia hemisphaerica | exon |
| TCONS_00017590-exon-sc0000271-1510915933:109305..111237 | TCONS_00017590-exon-sc0000271-1510915933:109305..111237 | Clytia hemisphaerica | exon |
| TCONS_00017590-exon-sc0000271-1575043694:109305..111237 | TCONS_00017590-exon-sc0000271-1575043694:109305..111237 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000271 | supercontig | sc0000271:109305..111237 + |
Blast
The following BLAST results are available for this feature:
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