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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017605 ID=TCONS_00017605|Name=TCONS_00017605|organism=Clytia hemisphaerica|type=transcript|length=1647bp
GTTATATATAGTCAACAATTTCAAgATGAAAGGATTTCTAACGATTCTCT
TTATCGGTTGTTTTCAAGCTCTTGTAACCGGGCGACACCACCACCCGAAA
CACCATGCCTTACAAAAGAGATCCGTATTACGGGAACTCAAAACACCGGT
AATGACTTTAGTTGACGACGTTGCTAAGGAAAGTATCCCAGGAGATCATG
ACAAGAAATTGAGAATCTTATCTCAATCTGGTGAAATGTATCCTGAGCAT
CGAGATGCAGTATCCAAACGAAAAACCATTCCAAATTTAACGATTTCTAA
AAATAAGCGACCTATGNCTGAGCATCGAGATGCAGTATCCAAACGAAAAA
CCATTCCAAATTtaacgatttccaaaaataagCGACCTATGGACGTCACT
GACgataaaaaattcaagatttccGGTAAAGACGAGTCTGATGATACTAG
TGAAGCCGACGACGATAAAAATACCGACAGCGACGATCAAGGTGACGACG
ATTCAGGCTCGGGAGCCGACGACAATAATGACGACCAATCAGATGACGAC
AATCAAAGCGAGGATGATGATTCGGCTAGCGACAATGAAACCGACAAAAA
ACCAGCTAATAAGAGACAATGCCGTAAACGATGTCGAATGCCTTTGACGT
TCCATCAATGCGCATTCCCAAGGTGTACTCAAAAATTGGGAACCATCAAA
GACCTTTGTTTCTTTTTGTGTAAACATCAAAAAGAGAAATGTGAGCGTGT
GTGTGATTAAAGTTTCTCGttgatgaaaatttcttcaatgCTGAGGTAGA
TTTCTGGGAGCTGGTTTGTTGATATGATTTCTATTAGTTCGCGGAACCTT
TCCCATCTCAGCAGATCAACTGATAAAATTTCTGACTTTTCATCTTGGGT
TTGACCCAGCTGATCTTTGGCAAATAATTTTGACTCAAACCCAAATTTAA
GTTAAAATGTATCTACAGtgaagtctctttaactcgaacctctataactc
gaatgtctccttaactcgacgagttttatggtcccttcagttaatgattt
cttataaaccttacttcacaactcgaacaaatttgtgttcatTGTGCGAT
TTCGAGTTATCGAGACTCCAGTGTAGTATGGATCCTGCAAAGGCTATCTA
GAGTTAGAATTTCTTTGATACTTAAATTACGAATTCTAAATCATCATTTA
GCCCCTTCTTTATAGTCACATTTTGcctatatttttttcaaaataaattt
gggTTACCGCGCTTGGAAGTTTCTTTACAGCATTAATTAAGTGATCTAGA
GATCTTCATCGTGTGTATTCATATGTCCCCCCGTCTTGAGATTTTGCAAc
ataatgttgttgttttttccaATACTTTTCCGATTTTACATATTTTATTG
ACTTGTGACAATCTTCTGTTATGAATTATGAAACTTATAAATTTTATGAG
ACAGTAAGATATGCTGATTTTTTTTAGACTTAATTTTTAcagataaaatt
tttttaaccacaAAAGTTTTTTAACCACAAAATTTTGAGACTACAGCTTT
CGGTTTTAATGACATTTTAAAGCACGTCAAATCTTAAACACGCAGATTTT
ACTGATGATGCAGTATTAATCTTAAATTGGGAACAATAAAGTATAGA Run BLAST on NCBI transcript from alignment at sc0000271:188294..190658+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017605 ID=TCONS_00017605|Name=TCONS_00017605|organism=Clytia hemisphaerica|type=transcript|length=2365bp|location=Sequence derived from alignment at sc0000271:188294..190658+ (Clytia hemisphaerica)
GTTATATATAGTCAACAATTTCAAggtaatttaaaatttcaagtaatttg
GACTTCAAGGTAATATtaggatttctttttttaataaatgttacgatata
agaacaaactatataagaatgtAAGGTATTTACGAACTCTATTACACTAG
AAATACAAACAATATagtgaagattttaagaacttttttaagctgaaaac
tcagaaagttaagaacatccaaaggcttcaaaaattttggatgttcttat
gaaaaaatgtgCATTCCAGAATGTTTAAGACTAATAGAATCCTTGGTACA
AACAAGGAATTTTGGACTGACTAATTTGATCTTTCAACTTGTCACTCATT
GTTTTAGTGCAATCCCACCTAAAAGGTTGTTCTTGTATAAAGTGTAGTGG
ACCTAGCCCCACTTACTCCGAAACTATGCTAAACGACACTTTGCAATAAT
TTGAGTTCTCTATTGATTACTTTACACGTTGTTTCTCATAAGAATAtcct
aaatttttgaagcctttggatgttcttaattttttgagttttcagcttaa
aaaagttcttaaaatcttcaccatattgtttgtatttttgtataatttcc
taagaaattgagtgtttCGGAGTCCGtgaagcctcaaaatgttcttaact
tttgatttttttgtttgtttgttcatataaaaaaacgtgtatcgttTTCA
CATCTTCGAACCTAACAAtttgtttgtattttctttCTTACAGATGAAAG
GATTTCTAACGATTCTCTTTATCGGTTGTTTTCAAGCTCTTGTAACCGGG
CGACACCACCACCCGAAACACCATGCCTTACAAAAGAGATCCGTATTACG
GGAACTCAAAACACCGGTAATGACTTTAGTTGACGACGTTGCTAAGGAAA
GTATCCCAGGAGATCATGACAAGAAATTGAGAATCTTATCTCAATCTGGT
GAAATGTATCCTGAGCATCGAGATGCAGTATCCAAACGAAAAACCATTCC
AAATTTAACGATTTCTAAAAATAAGCGACCTATGNCTGAGCATCGAGATG
CAGTATCCAAACGAAAAACCATTCCAAATTtaacgatttccaaaaataag
CGACCTATGGACGTCACTGACgataaaaaattcaagatttccGGTAAAGA
CGAGTCTGATGATACTAGTGAAGCCGACGACGATAAAAATACCGACAGCG
ACGATCAAGGTGACGACGATTCAGGCTCGGGAGCCGACGACAATAATGAC
GACCAATCAGATGACGACAATCAAAGCGAGGATGATGATTCGGCTAGCGA
CAATGAAACCGACAAAAAACCAGCTAATAAGAGACAATGCCGTAAACGAT
GTCGAATGCCTTTGACGTTCCATCAATGCGCATTCCCAAGGTGTACTCAA
AAATTGGGAACCATCAAAGACCTTTGTTTCTTTTTGTGTAAACATCAAAA
AGAGAAATGTGAGCGTGTGTGTGATTAAAGTTTCTCGttgatgaaaattt
cttcaatgCTGAGGTAGATTTCTGGGAGCTGGTTTGTTGATATGATTTCT
ATTAGTTCGCGGAACCTTTCCCATCTCAGCAGATCAACTGATAAAATTTC
TGACTTTTCATCTTGGGTTTGACCCAGCTGATCTTTGGCAAATAATTTTG
ACTCAAACCCAAATTTAAGTTAAAATGTATCTACAGtgaagtctctttaa
ctcgaacctctataactcgaatgtctccttaactcgacgagttttatggt
cccttcagttaatgatttcttataaaccttacttcacaactcgaacaaat
ttgtgttcatTGTGCGATTTCGAGTTATCGAGACTCCAGTGTAGTATGGA
TCCTGCAAAGGCTATCTAGAGTTAGAATTTCTTTGATACTTAAATTACGA
ATTCTAAATCATCATTTAGCCCCTTCTTTATAGTCACATTTTGcctatat
ttttttcaaaataaatttgggTTACCGCGCTTGGAAGTTTCTTTACAGCA
TTAATTAAGTGATCTAGAGATCTTCATCGTGTGTATTCATATGTCCCCCC
GTCTTGAGATTTTGCAAcataatgttgttgttttttccaATACTTTTCCG
ATTTTACATATTTTATTGACTTGTGACAATCTTCTGTTATGAATTATGAA
ACTTATAAATTTTATGAGACAGTAAGATATGCTGATTTTTTTTAGACTTA
ATTTTTAcagataaaatttttttaaccacaAAAGTTTTTTAACCACAAAA
TTTTGAGACTACAGCTTTCGGTTTTAATGACATTTTAAAGCACGTCAAAT
CTTAAACACGCAGATTTTACTGATGATGCAGTATTAATCTTAAATTGGGA
ACAATAAAGTATAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017605-exon-sc0000271-1491911889:188294..188318 | TCONS_00017605-exon-sc0000271-1491911889:188294..188318 | Clytia hemisphaerica | exon |
| TCONS_00017605-exon-sc0000271-1510915933:188294..188318 | TCONS_00017605-exon-sc0000271-1510915933:188294..188318 | Clytia hemisphaerica | exon |
| TCONS_00017605-exon-sc0000271-1575043694:188294..188318 | TCONS_00017605-exon-sc0000271-1575043694:188294..188318 | Clytia hemisphaerica | exon |
| TCONS_00017605-exon-sc0000271-1491911889:189037..190658 | TCONS_00017605-exon-sc0000271-1491911889:189037..190658 | Clytia hemisphaerica | exon |
| TCONS_00017605-exon-sc0000271-1510915933:189037..190658 | TCONS_00017605-exon-sc0000271-1510915933:189037..190658 | Clytia hemisphaerica | exon |
| TCONS_00017605-exon-sc0000271-1575043694:189037..190658 | TCONS_00017605-exon-sc0000271-1575043694:189037..190658 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000271 | supercontig | sc0000271:188294..190658 + |
Blast
The following BLAST results are available for this feature:
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