|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017606 ID=TCONS_00017606|Name=TCONS_00017606|organism=Clytia hemisphaerica|type=transcript|length=2413bpRun BLAST on NCBI protein sequence of TCONS_00017606-protein >TCONS_00017606-protein ID=TCONS_00017606-protein|Name=TCONS_00017606-protein|organism=Clytia hemisphaerica|type=polypeptide|length=531bp KNQAKTRIDNKLTINIDKKGHYFEKKNTEKNIIIKTKHSEERKEVLELTKRun BLAST on NCBI transcript from alignment at sc0000271:191309..247603+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017606 ID=TCONS_00017606|Name=TCONS_00017606|organism=Clytia hemisphaerica|type=transcript|length=56295bp|location=Sequence derived from alignment at sc0000271:191309..247603+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000271:191309..247603+ >TCONS_00017606 ID=TCONS_00017606|Name=TCONS_00017606|organism=Clytia hemisphaerica|type=CDS|length=28728bp|location=Sequence derived from alignment at sc0000271:191309..247603+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00017606 vs. Swiss-Prot (Human)
Match: MBOA5 (Lysophospholipid acyltransferase 5 OS=Homo sapiens GN=LPCAT3 PE=1 SV=1) HSP 1 Score: 264.233 bits (674), Expect = 2.161e-78 Identity = 145/363 (39.94%), Postives = 204/363 (56.20%), Query Frame = 2
Query: 185 KHGFEFINLDGLCNTLGIAEPPLRFFIGIVMGFPFALIFL-LLPRKAANFRHLYIALCGMLISYFCFGTDMVFPLLSVLVTHISLIFFGGTMANVIFNFLFHMTYMLGAYVFYASDGYDVKWTTPQCILCLRLIGLAWDCYDGKKDKSKLKGELLLTRYEGTPTFLEICGYSYFFGGFMAGPQFSFQRYIKFVEDRLIDKEGLEAKNSRFFSAFKRVVGGLVAIAVFSIYDPQYPASALHGEEFLAKPFFTKCTQITLTYHIHFCKYVTIWYFCESVCMITGLAYAGTKD-GKAKWDGVRNFKFRRVLFGAFFQDMLEGFNINTSQWAGRYVFKRLIFLGNKYASHVLTLLFLSLWHGFYIGY 1267
+ GF+ ++L+ L +LG +E LR I I +G+PFAL + L K HL+ G+ I+YF FG + LL +++ + L G T+ V+ F F M Y+L Y + A+ YD+KWT P C+L L+LIGLA D +DG KD++ L E G P+ LE+ G+SYF+G F+ GPQFS Y+K V+ LID G + NS A KR+ GL + +++ P L E++ PF+ +C + + KYVT W E VC++TGL + G ++ GKAKWD N K F + FNINT+ W RY+FKRL FLGNK S L+LLFL+LWHG + GY
Sbjct: 20 QSGFQELSLNKLATSLGASEQALRLIISIFLGYPFALFYRHYLFYKETYLIHLFHTFTGLSIAYFNFGNQLYHSLLCIVLQFLILRLMGRTITAVLTTFCFQMAYLLAGYYYTATGNYDIKWTMPHCVLTLKLIGLAVDYFDGGKDQNSLSSEQQKYAIRGVPSLLEVAGFSYFYGAFLVGPQFSMNHYMKLVQGELIDIPG-KIPNS-IIPALKRLSLGLFYLVGYTLLSPHITEDYLLTEDYDNHPFWFRCMYMLIWGKFVLYKYVTCWLVTEGVCILTGLGFNGFEEKGKAKWDACANMKVWLFETNPRFTGTIASFNINTNAWVARYIFKRLKFLGNKELSQGLSLLFLALWHGLHSGY 380 The following BLAST results are available for this feature:
BLAST of TCONS_00017606 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.