TCONS_00017615 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017615
Unique NameTCONS_00017615
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length710

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017615 ID=TCONS_00017615|Name=TCONS_00017615|organism=Clytia hemisphaerica|type=transcript|length=710bp
AACTTTAAAAATACTGCACTCTTTCAaccaattctttatttttttaccaG
GTCCGTGGAACATTCTTCAAACTCACCAACATTAGTTTCGACGAACTTTC
TCCTGTTACGCGTTATCCATTTCAAGCTTTTGGTGCTGTGTACAAGTTCT
TAGCCTGCGGATTTTACGTGCAagctttcatgctgctaaaatgGCGGAAA
TTTAGTATCGTGTACGCGAATGTATATTACTGGCCGGTCGTTCTCATGGC
ATCGTGGTATATTATTGCGAAACCTCTTCTGACCATGATCATACGATTCA
GAAAAAGGTCAACGAAGAAAGAGGAGACGAAGTCCAAAGCTGAATAAGGT
AGTAGTTAGTGAGAGTTTAAGaaagaagaatttttaaaaattatactgta
aaaaaaattttttagataatttttttgttctgtTTTATTTATAGTTTact
aatttattattttaattttgtttgatttttaaaaatatttttacgatGAC
AGTTGTCACTTTGAATATTTTGTGCGagtgaataaatgcaatcctaTCGA
AGAGAAAATATTACTTTTATTAAAGACATTAGATAGTTACGTAATAGTTT
AGAAAATGACGTTATAATTTTCTTTCTGAcgatttgtaaatttttagatt
ttaatgTTTGTCGAATatcttaaagaaagaaattttggcggctTTGTTAA
TAAATTGAGT
Run BLAST on NCBI

transcript from alignment at sc0000271:263220..265271+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017615 ID=TCONS_00017615|Name=TCONS_00017615|organism=Clytia hemisphaerica|type=transcript|length=2052bp|location=Sequence derived from alignment at sc0000271:263220..265271+ (Clytia hemisphaerica)
AACTTTAAAAATACTGCACTCTTTCAaccaattctttatttttttaccaG
GTCCGTGGAACATTCTTCAAACTCACCAACATTAGTTTCGACGAACTTTC
TCCTGTTACGCGTTATCCATTTCAAGCTTTTGGTGCTGTGTACAAGTTCT
TAGCCTGCGGATTTTACGTGCAagctttcatgctgctaaaatgGCGGAAA
TTTAGTATCGTAAGTATTTACTGTATCTTATTGTGGTACTTTTTATGGAG
CGTACTCTCAGATTTCTAATAAATACTGGACAAAAGCCTACAGACAAcca
ttccctcgaggaattcctaagagatttctattgtaatacacacGAAATGC
CCGTGCGGAaattggcagctacggtcgaaaaggcgtATAGCCTACAGACA
GCCATTCCTTCGATTGACCTGGATTGACCTAACAGTATTCAAAAAGTttg
tatatatattttacaatgatctttctCCATAGTTGGAATCCTCTTTGGTG
CCgaataataaaatttatatCAGAGAGAGGGTAGGAAGAAATAGAGGATT
TCAAGCAAGGGGTGACTTTTGGAAGGGGAGACgaagctttcttttttttc
tagtcaggatttgtattttttataaaaggagaaatctttttaatttatag
ttattttccatttttaggcCTTTTTAGTGTCATTGAATGGTATTGgcgat
ttcaattttcaatattcaggCGAATGCTAAGGAGGACAAGATCAGGGTCT
GATACCGAATTAAGGATTTTTTCCGAATTTATCGacgaatctttttttct
ttcgtttcagGTGTACGCGAATGTATATTACTGGCCGGTCGTTCTCATGG
CATCGTGGTATATTATTGCGAAACCTCTTCTGACCATGATCATACGATTC
AGAAAAAGGTATTTCAACTTTCTGATGTATAGAGTGAGAATGTTTAATAA
TGATTACTCCGAGCTGCCACCTATCCACGCTAAAGGGCATCTCCGTAAGA
GAATTTACCTAAGTTGGCGGTCGATCGTTGGCGCAGCGCTTTGATCTTTT
CCATCCAGATTTGGGATGAACATttttaaatgagcttttgagcgcCTTAA
TTGGCTAAACCTAAAACAATCACATCAAAATCAATAGCCAATCACAAACA
TAAATATTAGAGCCCAGtcgctttcactttcgttttcaaacgaAAAGCAA
CGTGGTTTTTATTGTTTCggctgaacaaccaggtcagataAGATTAGATT
ACAAACTCTGTAAACATTATTCTAATATTCTAGCATTCACATTCATATAT
TCCGTTCAATGTCTTTTCAGGAGGACTAGGCTCCTTAAGTAAACTGGTTT
CTCCCATATGGAACTCTACTCCACCTTTAGTGCACTTCGAACTGCCAAAA
TAGGTCCATCACGCAAAAATAGTCTTAAATAGTCTAATTTTCCAAGCGca
cggaccttattaggccccccccccctcccctgtttatttggaacctaaga
gtaccatCGTTcctcacgccaaaatcttgatcatgCTAGTACGCCCAAAA
ATTTGATTCAGGTCATCATGCACGAAAAAGCCTCAATAGAAATTATGCAA
ACCATTAGGGGAAACCGGGTGTGACATTATatgcattgttttatttcagG
TCAACGAAGAAAGAGGAGACGAAGTCCAAAGCTGAATAAGGTAGTAGTTA
GTGAGAGTTTAAGaaagaagaatttttaaaaattatactgtaaaaaaaat
tttttagataatttttttgttctgtTTTATTTATAGTTTactaatttatt
attttaattttgtttgatttttaaaaatatttttacgatGACAGTTGTCA
CTTTGAATATTTTGTGCGagtgaataaatgcaatcctaTCGAAGAGAAAA
TATTACTTTTATTAAAGACATTAGATAGTTACGTAATAGTTTAGAAAATG
ACGTTATAATTTTCTTTCTGAcgatttgtaaatttttagattttaatgTT
TGTCGAATatcttaaagaaagaaattttggcggctTTGTTAATAAATTGA
GT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009844XLOC_009844Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017615-exon-sc0000271-1491911889:263220..263428TCONS_00017615-exon-sc0000271-1491911889:263220..263428Clytia hemisphaericaexon
TCONS_00017615-exon-sc0000271-1510915933:263220..263428TCONS_00017615-exon-sc0000271-1510915933:263220..263428Clytia hemisphaericaexon
TCONS_00017615-exon-sc0000271-1575043694:263220..263428TCONS_00017615-exon-sc0000271-1575043694:263220..263428Clytia hemisphaericaexon
TCONS_00017615-exon-sc0000271-1491911889:264030..264127TCONS_00017615-exon-sc0000271-1491911889:264030..264127Clytia hemisphaericaexon
TCONS_00017615-exon-sc0000271-1510915933:264030..264127TCONS_00017615-exon-sc0000271-1510915933:264030..264127Clytia hemisphaericaexon
TCONS_00017615-exon-sc0000271-1575043694:264030..264127TCONS_00017615-exon-sc0000271-1575043694:264030..264127Clytia hemisphaericaexon
TCONS_00017615-exon-sc0000271-1491911889:264869..265271TCONS_00017615-exon-sc0000271-1491911889:264869..265271Clytia hemisphaericaexon
TCONS_00017615-exon-sc0000271-1510915933:264869..265271TCONS_00017615-exon-sc0000271-1510915933:264869..265271Clytia hemisphaericaexon
TCONS_00017615-exon-sc0000271-1575043694:264869..265271TCONS_00017615-exon-sc0000271-1575043694:264869..265271Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000271supercontigsc0000271:263220..265271 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.68232	3.72895	2.80627	2.51017	8.97667	5.58423	11.9266	13.6372	18.2601	18.0353	19.5861	13.6769	13.4695	9.68413	16.808	19.8931	18.9249	21.3044	6.62435	7.40453	14.4465	13.6255	15.2644	13.4347	13.7614	14.7245	10.681	7.97932	26.8805	17.1369
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017615 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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