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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017616 ID=TCONS_00017616|Name=TCONS_00017616|organism=Clytia hemisphaerica|type=transcript|length=849bp
ataaaacaaaaagaactacaaaaaaaatacacaaacccaacaaagaaaaa
tgtatCGCGAGATTTTATTAAATGGACCAAACATTGTTGGGTACGTCCGT
TTGATGTTGGTCTTCACTGGATGTTTATTCTTCAACAATACTGTCTTCAT
CACTTTCGTTTCTCTATCCGCCATATTGGATATGTTCGATGGATACTTAG
CACGCAAATGGAACCAAGAAACTCGTTTCGGTGAATGGCTGGATGTTGTT
ATTGATCTATTTACAAGAGGTTTACTTTGGTGTCGAGCTTTGCCCAATTT
CGGATTCCTGATCTTCGGATTTGAATTTCTAGTTTTCGTTGCTATACAGG
CTAACAGCCATAATAGTGAGAATCGAGCTTGGCAGGAAAGGAAGAGAGGT
TTAAATTGGTTGGCTGCAATGACTGTATCTAAAGGCTTTAAGACCATCCC
CGGAGCGATTGCTATCATTGGTTTGTGGGTTCTACCGGTATGGGCTTGCA
TTATGATGAATTCCGACACATcttttttggttgattttttaagtttttcc
cCGAAAACGGCAGATTCGTTTGAATTTTTAATCACAGCATTCTTAATAAC
CTCACGCTTTCATTGTCTTCATGTAGAGCtctctattttgaaaaattata
ttttagacTTATTAGAAAGTTAAGTTtaagatattttatgttttatcaGT
ACAGTATTGTGAAAATTTCATGGATTgacttactaaaataattttcatac
tttttttcaaacataCTAGCTAACCGATTTTGCATTTCCAGGGAGGTTTT
AGAAAAGGCTGTTGATTCCCGAACATTGCCTGACAAAACCCCTTCCTTG Run BLAST on NCBI protein sequence of TCONS_00017616-protein >TCONS_00017616-protein ID=TCONS_00017616-protein|Name=TCONS_00017616-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MYREILLNGPNIVGYVRLMLVFTGCLFFNNTVFITFVSLSAILDMFDGYL
ARKWNQETRFGEWLDVVIDLFTRGLLWCRALPNFGFLIFGFEFLVFVAIQ
ANSHNSENRAWQERKRGLNWLAAMTVSKGFKTIPGAIAIIGLWVLPVWAC
IMMNSDTSFLVDFLSFSPKTADSFEFLITAFLITSRFHCLHVELSILKNY
ILDLLES Run BLAST on NCBI transcript from alignment at sc0000271:265890..267674+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017616 ID=TCONS_00017616|Name=TCONS_00017616|organism=Clytia hemisphaerica|type=transcript|length=1785bp|location=Sequence derived from alignment at sc0000271:265890..267674+ (Clytia hemisphaerica)
ataaaacaaaaagaactacaaaaaaaatacacaaacccaacaaagaaaaa
tgtatCGCGAGATTTTATTAAATGGACCAAACATTGTTGGGTACGTCCGT
TTGATGTTGGTCTTCACTGGATGTTTATTCTTCAACAATACTGTCTTCAT
CACTTTCGTTTCTCTATCCGCCATATTGGATATGTTCGGTAAGTCGGCAT
CGTGTTCAGTTTGGTTTGCGTGTTCTTCTACATTGTGGATACGCTCGTAC
ATCTGTCAAATCAGAATATATTAAAGTCGGATTAAAGTCCTTTAATTCAT
GATAGTCAtcacgtaatgttttctacgcaAACACCCTtatattttaaaca
atatttcgttgtttttttaaacttgccactactggcaaaagcGNTTAAAc
aatatttcgttgtttttttttaacttgccactactggcaaaagcgttatg
aatatcatgaatatattaAAGTCCTTTTTAAATTAGCTGTCAGGTAAGTA
TCAggacaatgggctcttccagaaagaaattgtacagggggggtggagga
tataacaatttttagttagttacccccggacagggtgacttttggccccc
ggacaataggttttacccccggacaagcatctgctgaccccccggacacc
ccaaattacccccggacagagcaaaatATCCTACACCCCCCCATGTACAA
TGACAAATACAAATAACTTTAGATATAGTTTGAACTAGCTGCGCTTTTGG
GCTCGTTAGAAAGATAATCATGAGTATTACAAAACgaaaaagttttgaag
aaaataactCTTGGCAGAATTAGGCTACACAAGGATACTAGTTTTACTTC
AGTGATTTATCAAGTTTAGATCATCATtgctgaaaaatgttttttatgag
tgcgcatgcgatgtatcgggaaaaatttcatattcaaaacaagagcagtg
tgCATATCCCGAAGGGTAGGCGTTTTGTGCTCGAAACGAAGAAAGACATG
ATGTAGGCTATCTTTCCTCCAATGCCGTTACTGTGATTTTACCGACAGCT
AATTTTTACGTGTTTTAAACGTTAGATTCATCCATCAACATTTTACACAA
TTccattgttgtttttatttctaGATGGATACTTAGCACGCAAATGGAAC
CAAGAAACTCGTTTCGGTGAATGGCTGGATGTTGTTATTGATCTATTTAC
AAGAGGTTTACTTTGGTGTCGAGCTTTGCCCAATTTCGGATTCCTGATCT
TCGGATTTGAATTTCTAGTTTTCGTTGCTATACAGGCTAACAGCCATAAT
AGTGAGAATCGAGCTTGGCAGGAAAGGAAGAGAGGTTTAAATTGGTTGGC
TGCAATGACTGTATCTAAAGGCTTTAAGACCATCCCCGGAGCGATTGCTA
TCATTGGTTTGTGGGTTCTACCGGTATGGGCTTGCATTATGATGAATTCC
GACACATcttttttggttgattttttaagtttttcccCGAAAACGGCAGA
TTCGTTTGAATTTTTAATCACAGCATTCTTAATAACCTCACGCTTTCATT
GTCTTCATGTAGAGCtctctattttgaaaaattatattttagacTTATTA
GAAAGTTAAGTTtaagatattttatgttttatcaGTACAGTATTGTGAAA
ATTTCATGGATTgacttactaaaataattttcatactttttttcaaacat
aCTAGCTAACCGATTTTGCATTTCCAGGGAGGTTTTAGAAAAGGCTGTTG
ATTCCCGAACATTGCCTGACAAAACCCCTTCCTTG Coding sequence (CDS) from alignment at sc0000271:265890..267674+ >TCONS_00017616 ID=TCONS_00017616|Name=TCONS_00017616|organism=Clytia hemisphaerica|type=CDS|length=1248bp|location=Sequence derived from alignment at sc0000271:265890..267674+ (Clytia hemisphaerica)
atgtatCGCGAGATTTTATTAAATGGACCAAACATTGTTGGGTACGTCCG
TTTGATGTTGGTCTTCACTGGATGTTTATTCTTCAACAATACTGTCTTCA
TCACTTTCGTTTCTCTATCCGCCATATTGGATATGTTCGATGGATACTTA
GCACGCAAATGGAACCAAGAAACTCGTTTCGGTGAATGGCTGGATGTTGT
TATTGATCTATTTACAAGAGGTTTACTTTGGTGTCGAGCTTTGCCCAATT
TCGGATTCCTGATCTTCGGATTTGAATTTCTAGTTTTCGTTGCTATACAG
GCTAACAGCCATAATAGTGAGAATCGAGCTTGGCAGGAAAGGAAGAGAGG
TTTAAATTGGTTGGCTGCAATGACTGTATCTAAAGGCTTTAAGACCATCC
CCGGAGCGATTGCTATCATTGGTTTGTGGGTTCTACCGGTATGGGCTTGC
ATTATGATGAATTCCGACACATcttttttggttgattttttaagtttttc
ccCGAAAACGGCAGATTCGTTTGAATTTTTAATCACAGCATTCTTAATAA
CCTCACGCTTTCATTGTCTTCATGTAGAGCtctctattttgaaaaattat
attttagacTTATTAGAAAGTTAAatgtatCGCGAGATTTTATTAAATGG
ACCAAACATTGTTGGGTACGTCCGTTTGATGTTGGTCTTCACTGGATGTT
TATTCTTCAACAATACTGTCTTCATCACTTTCGTTTCTCTATCCGCCATA
TTGGATATGTTCGATGGATACTTAGCACGCAAATGGAACCAAGAAACTCG
TTTCGGTGAATGGCTGGATGTTGTTATTGATCTATTTACAAGAGGTTTAC
TTTGGTGTCGAGCTTTGCCCAATTTCGGATTCCTGATCTTCGGATTTGAA
TTTCTAGTTTTCGTTGCTATACAGGCTAACAGCCATAATAGTGAGAATCG
AGCTTGGCAGGAAAGGAAGAGAGGTTTAAATTGGTTGGCTGCAATGACTG
TATCTAAAGGCTTTAAGACCATCCCCGGAGCGATTGCTATCATTGGTTTG
TGGGTTCTACCGGTATGGGCTTGCATTATGATGAATTCCGACACATcttt
tttggttgattttttaagtttttcccCGAAAACGGCAGATTCGTTTGAAT
TTTTAATCACAGCATTCTTAATAACCTCACGCTTTCATTGTCTTCATGTA
GAGCtctctattttgaaaaattatattttagacTTATTAGAAAGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017616-exon-sc0000271-1491911889:265890..266077 | TCONS_00017616-exon-sc0000271-1491911889:265890..266077 | Clytia hemisphaerica | exon |
| TCONS_00017616-exon-sc0000271-1510915933:265890..266077 | TCONS_00017616-exon-sc0000271-1510915933:265890..266077 | Clytia hemisphaerica | exon |
| TCONS_00017616-exon-sc0000271-1575043694:265890..266077 | TCONS_00017616-exon-sc0000271-1575043694:265890..266077 | Clytia hemisphaerica | exon |
| TCONS_00017616-exon-sc0000271-1491911889:267014..267674 | TCONS_00017616-exon-sc0000271-1491911889:267014..267674 | Clytia hemisphaerica | exon |
| TCONS_00017616-exon-sc0000271-1510915933:267014..267674 | TCONS_00017616-exon-sc0000271-1510915933:267014..267674 | Clytia hemisphaerica | exon |
| TCONS_00017616-exon-sc0000271-1575043694:267014..267674 | TCONS_00017616-exon-sc0000271-1575043694:267014..267674 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000271 | supercontig | sc0000271:265890..267674 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000462 | CDP-OH_P_trans |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008654 | phospholipid biosynthetic process |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016780 | phosphotransferase activity, for other substituted phosphate groups |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008654 |
phospholipid biosynthetic process |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0016780 |
phosphotransferase activity, for other substituted phosphate groups |
Blast
The following BLAST results are available for this feature:
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