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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017617 ID=TCONS_00017617|Name=TCONS_00017617|organism=Clytia hemisphaerica|type=transcript|length=1267bp
ataaaacaaaaagaactacaaaaaaaatacacaaacccaacaaagaaaaa
tgtatCGCGAGATTTTATTAAATGGACCAAACATTGTTGGGTACGTCCGT
TTGATGTTGGTCTTCACTGGATGTTTATTCTTCAACAATACTGTCTTCAT
CACTTTCGTTTCTCTATCCGCCATATTGGATATGTTCGATGGATACTTAG
CACGCAAATGGAACCAAGAAACTCGTTTCGGCTCTTTCCGACCCTGGATA
AAATTATACTATCGAATTTCCACTGTTGTAAAAGTTTCACACTCACTGGT
TATCATAAGAAATTTATTGCTGGGAGAGTTCTAAATATAATTCTACAACC
TTAGTGAGTATTAATCATAAATTCCAGGTACTTTACATTTCAATTCCATg
taaaattcaggaaatttaTATTTAGCACCTTGCCGACCTTAAatttcgaa
ttatttattaTCTGACCAACCGACGGATTTCCCGAAGATATACCCGTAGA
ACagcaaatttaatttgttcaaccagaatttaatttattttataaattta
tttgtaaccctgaaaatttaatttacaataatttataattttgttttcca
aaacaaaaaatagcgttttatttttaattttttatttttttaactctttA
TCAAGAATTTTAAGCAAATGTTAAGATCGGCCAAAAGATGATTTTGATGT
TATGAAATACATGAAAAAAACACGTCGAAGGAACGGGCGGGAGTGGAAAA
ATGCGATAATCTTTGGGACTTGCCATTTTTAACTCAACTGAGCTCCTTTT
TTTCCGAACACCCTGTAAACCCTGTATTGAAGGAATTCATTTATAGCAAA
ATAAATCTCGGTCGATTGCTCGAATTCCTTTAAAGAAATGGTGCGGGGTA
TGTCCGAGTCATAGGGGTCTCTTTTTCATtcgaaagtccctcaaaggggt
acaaaattGAAAAGCAAtcgagtctctgtaagggttccaaaattacgaaa
atcaaaaatcaactccctcaaagggtcataaattcttgaaatttagacta
aaatttggctgaaatttcggGGAAACTCTAATAgtggcaaaaacgtcaaa
aaatggacaaaattttcgaaattcagtttctctaagggttggttttGAAA
CTTTAGACATGCTCGTCACCTTGCAAACCTGGTAACCCCTCGCAAACTTT
GTCATTTAGCAAGTAAATGAAGTTTAGCATACaccaaaaagaaagatttt
caattATGCTTACGACG Run BLAST on NCBI transcript from alignment at sc0000271:265890..268903+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017617 ID=TCONS_00017617|Name=TCONS_00017617|organism=Clytia hemisphaerica|type=transcript|length=3014bp|location=Sequence derived from alignment at sc0000271:265890..268903+ (Clytia hemisphaerica)
ataaaacaaaaagaactacaaaaaaaatacacaaacccaacaaagaaaaa
tgtatCGCGAGATTTTATTAAATGGACCAAACATTGTTGGGTACGTCCGT
TTGATGTTGGTCTTCACTGGATGTTTATTCTTCAACAATACTGTCTTCAT
CACTTTCGTTTCTCTATCCGCCATATTGGATATGTTCGGTAAGTCGGCAT
CGTGTTCAGTTTGGTTTGCGTGTTCTTCTACATTGTGGATACGCTCGTAC
ATCTGTCAAATCAGAATATATTAAAGTCGGATTAAAGTCCTTTAATTCAT
GATAGTCAtcacgtaatgttttctacgcaAACACCCTtatattttaaaca
atatttcgttgtttttttaaacttgccactactggcaaaagcGNTTAAAc
aatatttcgttgtttttttttaacttgccactactggcaaaagcgttatg
aatatcatgaatatattaAAGTCCTTTTTAAATTAGCTGTCAGGTAAGTA
TCAggacaatgggctcttccagaaagaaattgtacagggggggtggagga
tataacaatttttagttagttacccccggacagggtgacttttggccccc
ggacaataggttttacccccggacaagcatctgctgaccccccggacacc
ccaaattacccccggacagagcaaaatATCCTACACCCCCCCATGTACAA
TGACAAATACAAATAACTTTAGATATAGTTTGAACTAGCTGCGCTTTTGG
GCTCGTTAGAAAGATAATCATGAGTATTACAAAACgaaaaagttttgaag
aaaataactCTTGGCAGAATTAGGCTACACAAGGATACTAGTTTTACTTC
AGTGATTTATCAAGTTTAGATCATCATtgctgaaaaatgttttttatgag
tgcgcatgcgatgtatcgggaaaaatttcatattcaaaacaagagcagtg
tgCATATCCCGAAGGGTAGGCGTTTTGTGCTCGAAACGAAGAAAGACATG
ATGTAGGCTATCTTTCCTCCAATGCCGTTACTGTGATTTTACCGACAGCT
AATTTTTACGTGTTTTAAACGTTAGATTCATCCATCAACATTTTACACAA
TTccattgttgtttttatttctaGATGGATACTTAGCACGCAAATGGAAC
CAAGAAACTCGTTTCGGTGAATGGCTGGATGTTGTTATTGATCTATTTAC
AAGAGGTTTACTTTGGTGTCGAGCTTTGCCCAATTTCGGATTCCTGATCT
TCGGATTTGAATTTCTAGTTTTCGTTGCTATACAGGCTAACAGCCATAAT
AGTGAGAATCGAGCTTGGCAGGAAAGGAAGAGAGGTTTAAATTGGTTGGC
TGCAATGACTGTATCTAAAGGCTTTAAGACCATCCCCGGAGCGATTGCTA
TCATTGGTTTGTGGGTTCTACCGGTATGGGCTTGCATTATGATGAATTCC
GACACATcttttttggttgattttttaagtttttcccCGAAAACGGCAGA
TTCGTTTGAATTTTTAATCACAGCATTCTTAATAACCTCACGCTTTCATT
GTCTTCATGTAGAGCtctctattttgaaaaattatattttagacTTATTA
GAAAGTTAAGTTtaagatattttatgttttatcaGTACAGTATTGTGAAA
ATTTCATGGATTgacttactaaaataattttcatactttttttcaaacat
aCTAGCTAACCGATTTTGCATTTCCAGGGAGGTTTTAGAAAAGGCTGTTG
ATTCCCGAACATTGCCTGACAAAACCCCTTCCTTGCCGAACACGACGAAA
ACTGTGTCTAAAGCAGCTTGGTTgaagggcaatattttcacttttcaaaa
caaactttggGGCCTTTTTTTAAAAGTATTCGAGTCTATCCCATCATTAA
GGTCAAGAAATTACGACTAGCATATCTTAAAATATATCGAATAATAATGa
gaattaaatttaatttttgttttacaGGCTCTTTCCGACCCTGGATAAAA
TTATACTATCGAATTTCCACTGTTGTAAAAGTTTCACACTCACTGGTTAT
CATAAGAAATTTATTGCTGGGAGAGTTCTAAATATAATTCTACAACCTTA
GTGAGTATTAATCATAAATTCCAGGTACTTTACATTTCAATTCCATgtaa
aattcaggaaatttaTATTTAGCACCTTGCCGACCTTAAatttcgaatta
tttattaTCTGACCAACCGACGGATTTCCCGAAGATATACCCGTAGAACa
gcaaatttaatttgttcaaccagaatttaatttattttataaatttattt
gtaaccctgaaaatttaatttacaataatttataattttgttttccaaaa
caaaaaatagcgttttatttttaattttttatttttttaactctttATCA
AGAATTTTAAGCAAATGTTAAGATCGGCCAAAAGATGATTTTGATGTTAT
GAAATACATGAAAAAAACACGTCGAAGGAACGGGCGGGAGTGGAAAAATG
CGATAATCTTTGGGACTTGCCATTTTTAACTCAACTGAGCTCCTTTTTTT
CCGAACACCCTGTAAACCCTGTATTGAAGGAATTCATTTATAGCAAAATA
AATCTCGGTCGATTGCTCGAATTCCTTTAAAGAAATGGTGCGGGGTATGT
CCGAGTCATAGGGGTCTCTTTTTCATtcgaaagtccctcaaaggggtaca
aaattGAAAAGCAAtcgagtctctgtaagggttccaaaattacgaaaatc
aaaaatcaactccctcaaagggtcataaattcttgaaatttagactaaaa
tttggctgaaatttcggGGAAACTCTAATAgtggcaaaaacgtcaaaaaa
tggacaaaattttcgaaattcagtttctctaagggttggttttGAAACTT
TAGACATGCTCGTCACCTTGCAAACCTGGTAACCCCTCGCAAACTTTGTC
ATTTAGCAAGTAAATGAAGTTTAGCATACaccaaaaagaaagattttcaa
ttATGCTTACGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017617-exon-sc0000271-1491911889:265890..266077 | TCONS_00017617-exon-sc0000271-1491911889:265890..266077 | Clytia hemisphaerica | exon |
| TCONS_00017617-exon-sc0000271-1510915933:265890..266077 | TCONS_00017617-exon-sc0000271-1510915933:265890..266077 | Clytia hemisphaerica | exon |
| TCONS_00017617-exon-sc0000271-1575043694:265890..266077 | TCONS_00017617-exon-sc0000271-1575043694:265890..266077 | Clytia hemisphaerica | exon |
| TCONS_00017617-exon-sc0000271-1491911889:267014..267055 | TCONS_00017617-exon-sc0000271-1491911889:267014..267055 | Clytia hemisphaerica | exon |
| TCONS_00017617-exon-sc0000271-1510915933:267014..267055 | TCONS_00017617-exon-sc0000271-1510915933:267014..267055 | Clytia hemisphaerica | exon |
| TCONS_00017617-exon-sc0000271-1575043694:267014..267055 | TCONS_00017617-exon-sc0000271-1575043694:267014..267055 | Clytia hemisphaerica | exon |
| TCONS_00017617-exon-sc0000271-1491911889:267867..268903 | TCONS_00017617-exon-sc0000271-1491911889:267867..268903 | Clytia hemisphaerica | exon |
| TCONS_00017617-exon-sc0000271-1510915933:267867..268903 | TCONS_00017617-exon-sc0000271-1510915933:267867..268903 | Clytia hemisphaerica | exon |
| TCONS_00017617-exon-sc0000271-1575043694:267867..268903 | TCONS_00017617-exon-sc0000271-1575043694:267867..268903 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000271 | supercontig | sc0000271:265890..268903 + |
Blast
The following BLAST results are available for this feature:
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