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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017620 ID=TCONS_00017620|Name=TCONS_00017620|organism=Clytia hemisphaerica|type=transcript|length=606bp
ctttcaggTAGGTCATGCAGGGTCACAAGCATTTCTTCTCGACCTTGCCG
GAAGTCTcctaaaacgaaaaaagaatttacgtaaattaaaaaatcaccaa
atgAAAAAACTGAAACCAAAAATACCCTTGAGCAAAAAAACTGAcgtata
ttgacaaaaaaaaatagaagtaaaatcttttttttcttccctaaacatga
tgaaaatttttgtcaatattcaaaagttaaaattttttacaCATCTCTCA
TTTCTCGGGTACTCTCAAATCAAGAGACTGGTTGTTACTTTTCGCAACTT
CACAAACAAAGACCAAAAAGACATTTCAAtcgtttaaaaataaaaagttt
atcaagtcattttgaaataattgtcatcatttcattaaaattcttatcaa
atttgtcaacaaattttcatcatttttcatcATACGGACTCTTTAAGTAA
CGGATGCAGGCAATTTCAAATTTTAGTGATCCACACACGCCAACAATTTT
ATTAACACCAACATCAGATGATAAGATGTCCACAACAGCTCTGTCAATGA
GTGATGAAAATGATGTTTTCTCCAGTAATGGAGATGATTATCACAACTCT
GANgac Run BLAST on NCBI transcript from alignment at sc0000271:277079..286150+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017620 ID=TCONS_00017620|Name=TCONS_00017620|organism=Clytia hemisphaerica|type=transcript|length=9072bp|location=Sequence derived from alignment at sc0000271:277079..286150+ (Clytia hemisphaerica)
ctttcaggTAGGTCATGCAGGGTCACAAGCATTTCTTCTCGACCTTGCCG
GAAGTCTcctaaaacgaaaaaagaatttacgtaaattaaaaaatcaccaa
atgAAAAAACTGAAACCAAAAATACCCTTGAGCAAAAAAACTGAcgtata
ttgacaaaaaaaaatagaagtaaaatcttttttttcttccctaaacatga
tgaaaatttttgtcaatattcaaaagttaaaattttttacaCATCTCTCA
TTTCTCGGGTACTCTCAAATCAAGAGACTGGTTGTTACTTTTCGCAACTT
CACAAACAAAGACCAAAAAGACATTTCAAtcgtttaaaaataaaaagttt
atcaagtcattttgaaataattgtcatcatttcattaaaattcttatcaa
atttgtcaacaaattttcatcatttttcatcATACGGACTCTTTAAGTAA
CGGATGCAGGCAATTTCAAAGTAAGTCGATTTATTTTTCCGATTTCATGC
CCTTACCCTGAGTGACTATCTCATTTCTAGTATACATTCGCTCAAGTGtg
ctttctttttttgctgCCGTGTGGAAACCACTATAAAGTCTAATTATGAC
AATTACGAGTGCATTGTTTCCTCGAGGTAAAGTGTATAGGAATTTTATTT
TGAGCACCTGAAAAACAAATCTCGTTGAATTTTAAGGGGTATTGATAATA
CATCGAGAGTGCTCATCAATCGATACATGTAAACATCCATATCATACAAA
TAACGATAATAGATAAAAGATTATGGGATGCTTTGAAAAATTCCTGCTCT
AGCAATCAACGACCGTTGACTAGACCGTTGACTAGACCGTtgacgttctt
aacttttttagttttaagcctaaaatgttctgaatatgttcttaatttgt
tcttaaacttttggtcatcgaagcttCATTATGCTCACtaatgtagtttg
ttcttataaaaaacgtataccGTTTGAGAAAAGCCCTTAAAGACTTGATT
GACATCCGATACAGGAGATTGGAACGAAACTTTTCAAGTATGTGACTCTA
GGTTTTCTTCCTAAGAAAGTCATTTCTCATTGAATGTAAGCACTAGGACT
ATCATTAATTAATTCTCAACGTTCCTTCCTACTGTACACCTGATTTTACA
TGATTGTTtataaaaatggttaaaaaggTTAGAAATGGAAACCGGAGTAA
GTGTACCCCATACTACCCAAAATTATGAATGTGACAGAAGGATAGAGGAT
AGAAATTGTAGAATAGTAGAAGAGGATGAATTGGAAGGGATTTAATtttc
atgtttaaaaaaaagtgtactgtaTATCTATAGCGTTATAAATTCATTTT
AGCTTGTGGATAGAATTTTGCGACTTTGTGAGTTATTATAAGTCACACAG
AAAATGGCGGAAGTATTTATACATGAAAGAAAGCTGTGAGATATAATATC
AGAATAGTATATAATACATTTCCAACTTAGACCCCTAGTGttaacaacat
tgtttcaattCTCCCTCTAACGTGTGGAACAGAAAAAATATGTTATTCTA
TTCTTTGTTAAAAGAAGGCTTGTACTAGTTAGAGTCAATTTCCCGTAGCC
TGTTGGAGGGCTTTCCTCCGTTCAACGCAAGCGGTCTAAATAAAATCTGA
TGAATCTTACAAAACTTATAATAGTTACTATCCATTAATTGTAGTTCAAG
TATGAAATAAAATCCTGATTCCGTTGTtatagaaagaaaaacattacatA
TAAAACTTTGTCAACTTTTGTGGTCAATTGGTCTTTTGTATTGTGATCAA
ATGACAACTTGACAAGGCTTCTCACTATACTATACTGAATAAAGACAGAT
TTCACCACAGAAGATATTTGGTACAGATAAAGTTTCGCTTGATTTATGAC
TATTGCATGTTACTGCACGAAACGTAACCTTACCACGTAATATTTTCTCT
TAAAACAAAAGAGAAGAGTAGTTGTAGATAAAAATCCGTTCAAAAGGGTT
TTTATGTAATGCGCTTATTTTTGTATTCGATCCAAGAAGAGCAGAGAAAA
GGAAGGTAAGCGATTTGTTGTGTCAATTTCTTCTAGACGTGCGAGCGCAA
GAATAAGTTTCTCGTAGAAGGCTCTGCCTCTATATGAACAGACTACTGCG
CAAGAGCTTTTTCTTGTGTATTTGGTGAACTACAGTAGCGTACAGACGCT
CTattattcgacgttctactatttgatacgctccattatttgataatatt
gaaaggcACCATCAACAAGAAACACTCATtaacgacgttctactattcga
tagacttccttattcaatgaaaaaccaaaccatgaaaatcaaattagaga
gcgtcaactgtatattcATCACACAAGGAAAACCATATGGAAGACTTAAA
ATCACTAATATCACTAATATATGTagaggaaaagttttttttccttttgt
ttgGAAGAACTATCCAGTCCCACCAGATTCTTCTGTGTAGACtggtaagt
aagtaagtatattcatcaggtggctgtcggcggagccgggagtgaggaag
tctatccccttttctatttgcgctagacctgagaaatcgaatgctgaggt
ggagcgccacacctactctcagctcccagtaacttaccgcctagatcaga
ttacccaatctaagctactcatccgctgagttggcggtgaccggggatcg
aacccacaaccctgagattgtaaggcgaatgctctaccgactgagctacc
cggccacTAACTGGTAAAAGTGTCTGATAATCGTATAAATGGATTATTTC
CAGGTTAAAGCTTGATTGCATAAGATGACTTTGTCTTTAATGCGCACCTA
TGATTTTTCTGAGGATCCGAGTCTCTCGGAATAATTCAATCCTATCCATA
ATTtccttttccagaaaaaaattttaatatgcGGGGTGGAGGGTATAACA
TTTCTTGGGAATTTACCCCTcagacattgtgacttttgacccacccccgg
acagcaggtctaaccccctggacaagcatcagttgacccacTGGGCATTC
AagaaattcccccccccccccccccaaggcTTCCCCCCCCGGAAAAACCC
CCtttcccccccttttttttaaaaaaattcccccccccccccggacaagg
caaattttatagatttttcactaccccgcggacactatatcctccaccaa
cccatgtacggacattttctggagcCCATTGCACCAAAATATGAGACGAT
CCTCCTTCTCTTGTTTGTTTATTTGCAAACTACATCTAAAAAATCCCCTT
AACACTCAAAACATTATGAGTACCTATATCCGATCCAATTTCTATGTTGC
TACCCACAGAATCAGAAATgtttattttggcttttttacTCTAGCTTGAG
gtatttttgtaaactttacaTCCATCCTTAGTTTTGTGGCTTTAGAACGT
ACACACATTTGAGCGCGTCAAGATTTCTTTTGGACCAGATAGTTGTGAAG
GTGAAAGTAGCTTCACGAGTTTTCGAGGTAGTCATCTTTGAGTCTCTCCC
GTATCTTCACTATGAGAATCATATAAGAATCTTTGTTCTGATTTCGTAAA
AAAATATTGCATGcacagaatggatgatctgttatgagattacaAAAACA
TTGAAGGCTCATTCATTGTGTACTATGAAATTTCGTTACTTAAAGTTTAC
AATCGTCGAGGTTTGAGGTAATCATTTTATTAGATTTGAAGGTTAAGTTG
GGTTAAAGTTGAGGTCAActtaaaaaactttgaaaacaaaaacaaacatt
ttatgCAGACGCTATAATTATGACCGATTATCCGCAATGTTTtcataaaa
atccaaaaaaaagttaagtatTTAACCCCTTGGTTTGATAGTTCACTGGA
CGACTTAACGACTTCATCGCAAGCAGTAGGCAAGAGACTGGAGCTAATTA
ATTTAAAGAACTAGATATCCTGTTTCATCAAACTTTGTACCAGCTCATAG
GCTTTTatacaaaaactttcaaaatcataATCTTTGGAAATGTTGTTGGA
AATCTTCAAGTTCTAAGACCCGAAAACAAAGCTTCGAAGATTCAAAGGTT
GGTGAAGATCGTATGACTTTGGCACAGTATGAGAAATTCTAGTCAAACGT
TGGACGAATTTGGATTATTAGTTATTAGAATATTATATATAGTTGGAAAT
TTAATGGCAGATGTAGATGAAACAAAACTAAACTAGAGATTTTGATATAA
GAAATGCAGacgaaaaagtttgaaaatagttttaaatgaAACAGTTTGAA
ACTGGTTTTTGAGACATGTGCGTAAAATATGCTAGTGTATGTTCCATTCG
TGAAGGGGGGATTATAGAAAAGTCAATGATATGTAAGGTTTTCAAAGGTT
TAAGAGTCGAATAATTTTGAAACTGCAGTAACGAACATTTTCTTTTAGAA
CTCTATAAAGTTAGGTTAACTATTTGCAAAAAATccatttgaatttcaaa
ggggTGTTTCGCGAAAGGCTAAGGAACGGATCTGTTGTTGGCTATCGACA
TTACCGAGTGTTAAAGTGGAACAACGTTTGTGCCAAGAGAATCTTTGAGA
GTTCTAGGTAgtaatgttttttaaatttcaatataATGAGAACCAAGACC
TATGCTAGGATGGCGTGATGTTAGGGTAGAAATGCAATAGCTTAGAAAAT
TAAGAAGATCAAAATACTTAAGAATTAGTCAATATTTATGAAACGTTTAA
AGGTGCTCAAGATTAACACTGTAAGTGTTGGCCACTAAGATctttaaaac
aaatatttttcaaggatTTGCACTAAAAATATGGTATCTTTTGGCACGTG
AAATGTATGTATGCCTCGTAATGCTTTTCTCTAGTGTGGATTTTTAATGT
TGTTTCTATTTTGACAAGGATACGTAGTCAGGAGGACACACTGCTGGTTC
AAAAGTAACAACATTAGTATCAACAAACTTAATTGGTAAAGTTGAAGGGT
AGCGACCGTCGATTTGTCAGCTTTTGGAACAGGTTAATGGAAGAAAAGTA
TAGTAGGAGTAAAAGTAGAATTTTCGTATTATTTGTGCTCCTGTACGAGG
GGGCCAAAAGGGACCGTAGACACATCTTTCTCTGAGATCTCTCTCTCTGA
GAGACTCTCTTCACAGAAAGACCTTATAGAGTTTAAGATTTCAAGAGAGA
AAAGAGTGTGGTTATTAACTAACTGCGGGTGGGATGTTTCACCATTGTTA
ATAAATTTTGGATATGTTTTCAAAGTGTTTATAATGCACGGCGGTTTTGG
ATGGAAATAAAATGTTCCCTAATTGAGGTTACACGAACGGCAGGGGCAga
gttttaaattcttttagtTTGCAAAGAAATCTACACTACTACTGCAGTGC
AAGTGTTACACGGCCTAGTGATGGATCAATGTAAAACAATTTAGTCTTCT
TACACTTTATGGCTttaaagcaatttagaaaagGGCAAATTGTTGGCGAT
GACTATatgatattttgtttattttgactaTTTCAAATGAGACGAAATAT
GGTTAGACAAAAGTCGACAGGAACGTAACTTTTATTTAAGGTGAATTTCT
CGTAATAGAGGTACGTTTCGTCGTCCTCAGAAGCTCAGTTCCACGCCTCT
TTGAATAGGGCGTGACACCCCTTTAAAGCACCCTTAGAAAGTTTTCCAGT
CCAGTGTTCCTTTCTCTTGAAACCTTCCACGAATCTCGTTTGcatgtttt
ctatttctatacAAGCTGTGAATGAGAGTTTATATCGCAACATAGCTTCC
GTTACGTCACACCGAGCGATGTTATAACATGCATAAAACAGCTAATCTCA
TTGTAACTATCATAACATGTCCTACAATATGTTATAtgttatttttttga
taattggATAATAATACTTAATACGTATTATAGCCTTTTTGTATCTTAAC
CGGCCAGGACGTCGCGTTATATTTTGATCTGTTGAACTACAGCTGATTCC
GACTCTctatttcgatttttgagggTTCTATAagaccaATAAGAAATGTA
AAAAGTAAACGGGACCATAGCTTTTTTACGCATTATAGAAAGTTCGAAAT
CAAGGGACCACGTATACAAACAGCGCATCCCATTCTAGAAATTGGATAAC
GTGAAAGTGGCCTTCTCGAAGGCATGTGGGCACtacaatacaaaaaaata
tttgagtaACCATCGAACCATGTTTCATGTACCACTATGTATATATTTTG
CGCGTGCGTTGATTCACAGAAAAATACTTaagatattttctaaatttttc
taaaagatctTCACTTGATGTTCATCAGAGATATTTTGCCTTGCCTTCCA
TTTTCCAAGAACATTACTTTTTATTCGCATTCTTGTGAAATGCGCAGCAG
AAGTTTCGATAAATTTCTGAACTggaatcaaaatattttggaaaacctAT
AAAGGATAATCCCATaatattttcaatagtttgaacTCAAAGCATTTATC
AcctatatttaaaaaaatacatgtGTAAAGCTACGCGTTCTGCTTTTAAA
AGAAAGACGCAGAATTTAAGCTTGAAGCTCAACGAGAGAGAAATTTATGC
AAAATAACAGGTTTTAGTAATTCTTACGTAAACCTTTTGATGTCAAAGGC
TGGAATTTCGGAAAAAGCAAACGGTTTGAGCTTAGAGCTACTATATCAAT
CTATGGGTTTCTATACATGGCTTATGGTacttatgataaaaataaaaatt
gaaaaataataactACCGTCAATTTGATGAGAGAGTTATTCAGTTTGTTA
GCCGTCAAGGTTACTGAAACGCATTGTTTgaggaaaaattttaaacccag
GGTAACGCAAACAAAAAATTGAGTCCGCGGCAGGATAAACTtgcgaaaaa
aaacaagctgAACAACTAAACAAAGGAAAGCTAAGAAATTTCTCAGTTAA
AGGTGGAAAGGTTggtgtaaaatttgaaagtAAAGATCAATTTAGATGGG
TTAATATTGTataaaaattttttggaaaaagcaaAGGGATTTTTGATACA
CCTATTTTGTAacgaaatttaattttggcagaACAATGGATTATCCTCTG
TAAGTAAAGAACATTCTTCAAAAATCATTCCTTATTAGTTTGCCTTAAAT
TAACTTAAAGTTGTGGGTTGTTTTATTCACCCAAAATTTTTCAGGCAAAA
GTAGTACTGTAAAATTTATCTTAAAACTTATCAGAGTATTTTATCTGTGT
TAGCAACTCagttaataaaatcgaacgtttACCGATTAGGACAAATTAGA
CAACAACATTGACAGCATCAAATTAAGGAATATACAATTGACGAGCTCTC
AAGTTGGAAAATCTACAGTGTGTCCGAAAAAAGTGgaacagaaagaaaaa
cagaTTTTATGTAAACCAAAACTTCTATACCGAGCGTGATTTTAAATCGA
AATCCAATGTTAATTCaatatgttgaacggtgaaataGAATGCGGATATT
ATAATTTGATTATGCTCGACTTCAGTAGTGTACGGGctttgagaatttta
ttttatataaaatCGGTTACGCTTATTTTCCGGACACACTCTATAAAAAA
TCCAAAGGATTACTTGTGAAAGACAGTCAGCCAGATAGAAGTTTAGAGAA
ATGAATGGATATTAATTAAAGTAAGCTTACATTTTTAGTGTGATTTCAAG
TGCTTGCTGTGATCTATGCAACCAATTTTTATACCACTGCTATTCTTTCA
CGATCTTTCGAAATACTTGGTCATGCCTAGAAAGATTGGATGTTGTGAAA
TAAGTTTACAAAATAATTCATACGCATGCTGGTAGAAACCTATAGAAATA
caactttaaaaatatatttcaatcatTTCTGACCAACCTACTATCGAAAT
ATTAGGACGATATCACTTAGTTCTAGAATGGTCAGGACAACTACCGTAAA
CAGAAATTGTTCTTTTCGttcatttcattaaaaacactcTCGGGGGGAAT
ATTTGTAAATctaggtttttttttatatggTTTTTAAGTTTACTTGTGAA
GGCTCATTTTACCCATTGGCCATTTTGGCCCGACTTTGATGTGCTGTAAA
ACTTGAAATATATGCCAAGCCAGCAAACTTTTTCTTGAGTAATAATTTTC
TCCAATTTCAGAAAATCTTCACTTTTCACTTacattcattttcaatttta
aaatttttttgaggaatttttataaaatcccactttgaattttttttcca
atctcTCAATACTATGTTTGGGTGATTTAAAATAGAAAGTCTCGTCTGAG
TGAGGTCATCTTACTATTCTTGACTGCTTGATGATGACTgcgtcaaaaat
taaaaagatcctAGGTTTATCTAAGTAAAAAAGGGTTTAGCAAAATTATG
TTGCAATATGTAATTTGAATAAATACTCCGTGCCAAACATGAATATCCAA
GTTCACGCTGTCACACTGTTTCTGTCTTTAGAGTTTGATTTCTTGACATT
CTCAGACAATTCACAATTAACCGAATTCTTCATCAAAAAAAGTATCATTT
GAACATGATAACATCTCTGGCTGTAGGCTTTGTATATATGATAGCCTATA
AAGTAATCTACTAATATAAAAAATCGGCTCATTTGGGTGACTGATATCCA
AAAATTTTCCGTTTTCTACTGATGTATTTGTACCCTGTTCTTTTCACAGT
TTTAGTGATCCACACACGCCAACAATTTTATTAACACCAACATCAGATGA
TAAGATGTCCACAACAGCTCTGTCAATGAGTGATGAAAATGATGTTTTCT
CCAGTAATGGAGGTAAGTTCACCTACCAAAATAGTTGATAGCTTgtcaat
aaaaattcattgggcCAAATTCGTGTAGAATTTCGGAGTCTAAAATAATC
TACCGTTTAAGCGATAGATTTCCGTGGATCAGTGCCGTTTTAAGAACGTC
GAAACTATGATTAGTTTATCTTTCTAACAGTTTTCTTCACTGAAAATATT
CTAATACATCAATCAGTTGAGCAAAATTATCTCTCATTCTTTTTATCAGA
TGATTATCACAACTCTGANgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017620-exon-sc0000271-1491911889:277079..277548 | TCONS_00017620-exon-sc0000271-1491911889:277079..277548 | Clytia hemisphaerica | exon |
| TCONS_00017620-exon-sc0000271-1510915933:277079..277548 | TCONS_00017620-exon-sc0000271-1510915933:277079..277548 | Clytia hemisphaerica | exon |
| TCONS_00017620-exon-sc0000271-1575043694:277079..277548 | TCONS_00017620-exon-sc0000271-1575043694:277079..277548 | Clytia hemisphaerica | exon |
| TCONS_00017620-exon-sc0000271-1491911889:285778..285890 | TCONS_00017620-exon-sc0000271-1491911889:285778..285890 | Clytia hemisphaerica | exon |
| TCONS_00017620-exon-sc0000271-1510915933:285778..285890 | TCONS_00017620-exon-sc0000271-1510915933:285778..285890 | Clytia hemisphaerica | exon |
| TCONS_00017620-exon-sc0000271-1575043694:285778..285890 | TCONS_00017620-exon-sc0000271-1575043694:285778..285890 | Clytia hemisphaerica | exon |
| TCONS_00017620-exon-sc0000271-1491911889:286128..286150 | TCONS_00017620-exon-sc0000271-1491911889:286128..286150 | Clytia hemisphaerica | exon |
| TCONS_00017620-exon-sc0000271-1510915933:286128..286150 | TCONS_00017620-exon-sc0000271-1510915933:286128..286150 | Clytia hemisphaerica | exon |
| TCONS_00017620-exon-sc0000271-1575043694:286128..286150 | TCONS_00017620-exon-sc0000271-1575043694:286128..286150 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000271 | supercontig | sc0000271:277079..286150 + |
Blast
The following BLAST results are available for this feature:
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