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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017622 ID=TCONS_00017622|Name=TCONS_00017622|organism=Clytia hemisphaerica|type=transcript|length=492bp
ATCAAATGACAACTTGACAAGGCTTCTCACTATACTATACTGAATAAAGA
CAGATTTCACCACAGAAGATATTTGGTACAGATAAAGTTTCGCTTGATTT
ATGACTATTGCATGTTACTGCACGAAACGTAACCTTACCACGTAATATTT
TCTCTTAAAACAAAAGAGAAGAGTAGTTGTAGATAAAAATCCGTTCAAAA
GGGTTTTTATGTAATGCGCTTATTTTTGTATTCGATCCAAGAAGAGCAGA
GAAAAGGAAGTTTTGTGGCTTTAGAACGTACACACATTTGAGCGCGTCAA
GATTTCTTTTGGACCAGATAGTTGTGAAGGTGAAAGTAGCTTCACGAGTT
TTCGAGTTTTAGTGATCCACACACGCCAACAATTTTATTAACACCAACAT
CAGATGATAAGATGTCCACAACAGCTCTGTCAATGAGTGATGAAAATGAT
GTTTTCTCCAGTAATGGAGATGATTATCACAACTCTGANgac Run BLAST on NCBI transcript from alignment at sc0000271:278874..286150+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017622 ID=TCONS_00017622|Name=TCONS_00017622|organism=Clytia hemisphaerica|type=transcript|length=7277bp|location=Sequence derived from alignment at sc0000271:278874..286150+ (Clytia hemisphaerica)
ATCAAATGACAACTTGACAAGGCTTCTCACTATACTATACTGAATAAAGA
CAGATTTCACCACAGAAGATATTTGGTACAGATAAAGTTTCGCTTGATTT
ATGACTATTGCATGTTACTGCACGAAACGTAACCTTACCACGTAATATTT
TCTCTTAAAACAAAAGAGAAGAGTAGTTGTAGATAAAAATCCGTTCAAAA
GGGTTTTTATGTAATGCGCTTATTTTTGTATTCGATCCAAGAAGAGCAGA
GAAAAGGAAGGTAAGCGATTTGTTGTGTCAATTTCTTCTAGACGTGCGAG
CGCAAGAATAAGTTTCTCGTAGAAGGCTCTGCCTCTATATGAACAGACTA
CTGCGCAAGAGCTTTTTCTTGTGTATTTGGTGAACTACAGTAGCGTACAG
ACGCTCTattattcgacgttctactatttgatacgctccattatttgata
atattgaaaggcACCATCAACAAGAAACACTCATtaacgacgttctacta
ttcgatagacttccttattcaatgaaaaaccaaaccatgaaaatcaaatt
agagagcgtcaactgtatattcATCACACAAGGAAAACCATATGGAAGAC
TTAAAATCACTAATATCACTAATATATGTagaggaaaagttttttttcct
tttgtttgGAAGAACTATCCAGTCCCACCAGATTCTTCTGTGTAGACtgg
taagtaagtaagtatattcatcaggtggctgtcggcggagccgggagtga
ggaagtctatccccttttctatttgcgctagacctgagaaatcgaatgct
gaggtggagcgccacacctactctcagctcccagtaacttaccgcctaga
tcagattacccaatctaagctactcatccgctgagttggcggtgaccggg
gatcgaacccacaaccctgagattgtaaggcgaatgctctaccgactgag
ctacccggccacTAACTGGTAAAAGTGTCTGATAATCGTATAAATGGATT
ATTTCCAGGTTAAAGCTTGATTGCATAAGATGACTTTGTCTTTAATGCGC
ACCTATGATTTTTCTGAGGATCCGAGTCTCTCGGAATAATTCAATCCTAT
CCATAATTtccttttccagaaaaaaattttaatatgcGGGGTGGAGGGTA
TAACATTTCTTGGGAATTTACCCCTcagacattgtgacttttgacccacc
cccggacagcaggtctaaccccctggacaagcatcagttgacccacTGGG
CATTCAagaaattcccccccccccccccccaaggcTTCCCCCCCCGGAAA
AACCCCCtttcccccccttttttttaaaaaaattcccccccccccccgga
caaggcaaattttatagatttttcactaccccgcggacactatatcctcc
accaacccatgtacggacattttctggagcCCATTGCACCAAAATATGAG
ACGATCCTCCTTCTCTTGTTTGTTTATTTGCAAACTACATCTAAAAAATC
CCCTTAACACTCAAAACATTATGAGTACCTATATCCGATCCAATTTCTAT
GTTGCTACCCACAGAATCAGAAATgtttattttggcttttttacTCTAGC
TTGAGgtatttttgtaaactttacaTCCATCCTTAGTTTTGTGGCTTTAG
AACGTACACACATTTGAGCGCGTCAAGATTTCTTTTGGACCAGATAGTTG
TGAAGGTGAAAGTAGCTTCACGAGTTTTCGAGGTAGTCATCTTTGAGTCT
CTCCCGTATCTTCACTATGAGAATCATATAAGAATCTTTGTTCTGATTTC
GTAAAAAAATATTGCATGcacagaatggatgatctgttatgagattacaA
AAACATTGAAGGCTCATTCATTGTGTACTATGAAATTTCGTTACTTAAAG
TTTACAATCGTCGAGGTTTGAGGTAATCATTTTATTAGATTTGAAGGTTA
AGTTGGGTTAAAGTTGAGGTCAActtaaaaaactttgaaaacaaaaacaa
acattttatgCAGACGCTATAATTATGACCGATTATCCGCAATGTTTtca
taaaaatccaaaaaaaagttaagtatTTAACCCCTTGGTTTGATAGTTCA
CTGGACGACTTAACGACTTCATCGCAAGCAGTAGGCAAGAGACTGGAGCT
AATTAATTTAAAGAACTAGATATCCTGTTTCATCAAACTTTGTACCAGCT
CATAGGCTTTTatacaaaaactttcaaaatcataATCTTTGGAAATGTTG
TTGGAAATCTTCAAGTTCTAAGACCCGAAAACAAAGCTTCGAAGATTCAA
AGGTTGGTGAAGATCGTATGACTTTGGCACAGTATGAGAAATTCTAGTCA
AACGTTGGACGAATTTGGATTATTAGTTATTAGAATATTATATATAGTTG
GAAATTTAATGGCAGATGTAGATGAAACAAAACTAAACTAGAGATTTTGA
TATAAGAAATGCAGacgaaaaagtttgaaaatagttttaaatgaAACAGT
TTGAAACTGGTTTTTGAGACATGTGCGTAAAATATGCTAGTGTATGTTCC
ATTCGTGAAGGGGGGATTATAGAAAAGTCAATGATATGTAAGGTTTTCAA
AGGTTTAAGAGTCGAATAATTTTGAAACTGCAGTAACGAACATTTTCTTT
TAGAACTCTATAAAGTTAGGTTAACTATTTGCAAAAAATccatttgaatt
tcaaaggggTGTTTCGCGAAAGGCTAAGGAACGGATCTGTTGTTGGCTAT
CGACATTACCGAGTGTTAAAGTGGAACAACGTTTGTGCCAAGAGAATCTT
TGAGAGTTCTAGGTAgtaatgttttttaaatttcaatataATGAGAACCA
AGACCTATGCTAGGATGGCGTGATGTTAGGGTAGAAATGCAATAGCTTAG
AAAATTAAGAAGATCAAAATACTTAAGAATTAGTCAATATTTATGAAACG
TTTAAAGGTGCTCAAGATTAACACTGTAAGTGTTGGCCACTAAGATcttt
aaaacaaatatttttcaaggatTTGCACTAAAAATATGGTATCTTTTGGC
ACGTGAAATGTATGTATGCCTCGTAATGCTTTTCTCTAGTGTGGATTTTT
AATGTTGTTTCTATTTTGACAAGGATACGTAGTCAGGAGGACACACTGCT
GGTTCAAAAGTAACAACATTAGTATCAACAAACTTAATTGGTAAAGTTGA
AGGGTAGCGACCGTCGATTTGTCAGCTTTTGGAACAGGTTAATGGAAGAA
AAGTATAGTAGGAGTAAAAGTAGAATTTTCGTATTATTTGTGCTCCTGTA
CGAGGGGGCCAAAAGGGACCGTAGACACATCTTTCTCTGAGATCTCTCTC
TCTGAGAGACTCTCTTCACAGAAAGACCTTATAGAGTTTAAGATTTCAAG
AGAGAAAAGAGTGTGGTTATTAACTAACTGCGGGTGGGATGTTTCACCAT
TGTTAATAAATTTTGGATATGTTTTCAAAGTGTTTATAATGCACGGCGGT
TTTGGATGGAAATAAAATGTTCCCTAATTGAGGTTACACGAACGGCAGGG
GCAgagttttaaattcttttagtTTGCAAAGAAATCTACACTACTACTGC
AGTGCAAGTGTTACACGGCCTAGTGATGGATCAATGTAAAACAATTTAGT
CTTCTTACACTTTATGGCTttaaagcaatttagaaaagGGCAAATTGTTG
GCGATGACTATatgatattttgtttattttgactaTTTCAAATGAGACGA
AATATGGTTAGACAAAAGTCGACAGGAACGTAACTTTTATTTAAGGTGAA
TTTCTCGTAATAGAGGTACGTTTCGTCGTCCTCAGAAGCTCAGTTCCACG
CCTCTTTGAATAGGGCGTGACACCCCTTTAAAGCACCCTTAGAAAGTTTT
CCAGTCCAGTGTTCCTTTCTCTTGAAACCTTCCACGAATCTCGTTTGcat
gttttctatttctatacAAGCTGTGAATGAGAGTTTATATCGCAACATAG
CTTCCGTTACGTCACACCGAGCGATGTTATAACATGCATAAAACAGCTAA
TCTCATTGTAACTATCATAACATGTCCTACAATATGTTATAtgttatttt
tttgataattggATAATAATACTTAATACGTATTATAGCCTTTTTGTATC
TTAACCGGCCAGGACGTCGCGTTATATTTTGATCTGTTGAACTACAGCTG
ATTCCGACTCTctatttcgatttttgagggTTCTATAagaccaATAAGAA
ATGTAAAAAGTAAACGGGACCATAGCTTTTTTACGCATTATAGAAAGTTC
GAAATCAAGGGACCACGTATACAAACAGCGCATCCCATTCTAGAAATTGG
ATAACGTGAAAGTGGCCTTCTCGAAGGCATGTGGGCACtacaatacaaaa
aaatatttgagtaACCATCGAACCATGTTTCATGTACCACTATGTATATA
TTTTGCGCGTGCGTTGATTCACAGAAAAATACTTaagatattttctaaat
ttttctaaaagatctTCACTTGATGTTCATCAGAGATATTTTGCCTTGCC
TTCCATTTTCCAAGAACATTACTTTTTATTCGCATTCTTGTGAAATGCGC
AGCAGAAGTTTCGATAAATTTCTGAACTggaatcaaaatattttggaaaa
cctATAAAGGATAATCCCATaatattttcaatagtttgaacTCAAAGCAT
TTATCAcctatatttaaaaaaatacatgtGTAAAGCTACGCGTTCTGCTT
TTAAAAGAAAGACGCAGAATTTAAGCTTGAAGCTCAACGAGAGAGAAATT
TATGCAAAATAACAGGTTTTAGTAATTCTTACGTAAACCTTTTGATGTCA
AAGGCTGGAATTTCGGAAAAAGCAAACGGTTTGAGCTTAGAGCTACTATA
TCAATCTATGGGTTTCTATACATGGCTTATGGTacttatgataaaaataa
aaattgaaaaataataactACCGTCAATTTGATGAGAGAGTTATTCAGTT
TGTTAGCCGTCAAGGTTACTGAAACGCATTGTTTgaggaaaaattttaaa
cccagGGTAACGCAAACAAAAAATTGAGTCCGCGGCAGGATAAACTtgcg
aaaaaaaacaagctgAACAACTAAACAAAGGAAAGCTAAGAAATTTCTCA
GTTAAAGGTGGAAAGGTTggtgtaaaatttgaaagtAAAGATCAATTTAG
ATGGGTTAATATTGTataaaaattttttggaaaaagcaaAGGGATTTTTG
ATACACCTATTTTGTAacgaaatttaattttggcagaACAATGGATTATC
CTCTGTAAGTAAAGAACATTCTTCAAAAATCATTCCTTATTAGTTTGCCT
TAAATTAACTTAAAGTTGTGGGTTGTTTTATTCACCCAAAATTTTTCAGG
CAAAAGTAGTACTGTAAAATTTATCTTAAAACTTATCAGAGTATTTTATC
TGTGTTAGCAACTCagttaataaaatcgaacgtttACCGATTAGGACAAA
TTAGACAACAACATTGACAGCATCAAATTAAGGAATATACAATTGACGAG
CTCTCAAGTTGGAAAATCTACAGTGTGTCCGAAAAAAGTGgaacagaaag
aaaaacagaTTTTATGTAAACCAAAACTTCTATACCGAGCGTGATTTTAA
ATCGAAATCCAATGTTAATTCaatatgttgaacggtgaaataGAATGCGG
ATATTATAATTTGATTATGCTCGACTTCAGTAGTGTACGGGctttgagaa
ttttattttatataaaatCGGTTACGCTTATTTTCCGGACACACTCTATA
AAAAATCCAAAGGATTACTTGTGAAAGACAGTCAGCCAGATAGAAGTTTA
GAGAAATGAATGGATATTAATTAAAGTAAGCTTACATTTTTAGTGTGATT
TCAAGTGCTTGCTGTGATCTATGCAACCAATTTTTATACCACTGCTATTC
TTTCACGATCTTTCGAAATACTTGGTCATGCCTAGAAAGATTGGATGTTG
TGAAATAAGTTTACAAAATAATTCATACGCATGCTGGTAGAAACCTATAG
AAATAcaactttaaaaatatatttcaatcatTTCTGACCAACCTACTATC
GAAATATTAGGACGATATCACTTAGTTCTAGAATGGTCAGGACAACTACC
GTAAACAGAAATTGTTCTTTTCGttcatttcattaaaaacactcTCGGGG
GGAATATTTGTAAATctaggtttttttttatatggTTTTTAAGTTTACTT
GTGAAGGCTCATTTTACCCATTGGCCATTTTGGCCCGACTTTGATGTGCT
GTAAAACTTGAAATATATGCCAAGCCAGCAAACTTTTTCTTGAGTAATAA
TTTTCTCCAATTTCAGAAAATCTTCACTTTTCACTTacattcattttcaa
ttttaaaatttttttgaggaatttttataaaatcccactttgaatttttt
ttccaatctcTCAATACTATGTTTGGGTGATTTAAAATAGAAAGTCTCGT
CTGAGTGAGGTCATCTTACTATTCTTGACTGCTTGATGATGACTgcgtca
aaaattaaaaagatcctAGGTTTATCTAAGTAAAAAAGGGTTTAGCAAAA
TTATGTTGCAATATGTAATTTGAATAAATACTCCGTGCCAAACATGAATA
TCCAAGTTCACGCTGTCACACTGTTTCTGTCTTTAGAGTTTGATTTCTTG
ACATTCTCAGACAATTCACAATTAACCGAATTCTTCATCAAAAAAAGTAT
CATTTGAACATGATAACATCTCTGGCTGTAGGCTTTGTATATATGATAGC
CTATAAAGTAATCTACTAATATAAAAAATCGGCTCATTTGGGTGACTGAT
ATCCAAAAATTTTCCGTTTTCTACTGATGTATTTGTACCCTGTTCTTTTC
ACAGTTTTAGTGATCCACACACGCCAACAATTTTATTAACACCAACATCA
GATGATAAGATGTCCACAACAGCTCTGTCAATGAGTGATGAAAATGATGT
TTTCTCCAGTAATGGAGGTAAGTTCACCTACCAAAATAGTTGATAGCTTg
tcaataaaaattcattgggcCAAATTCGTGTAGAATTTCGGAGTCTAAAA
TAATCTACCGTTTAAGCGATAGATTTCCGTGGATCAGTGCCGTTTTAAGA
ACGTCGAAACTATGATTAGTTTATCTTTCTAACAGTTTTCTTCACTGAAA
ATATTCTAATACATCAATCAGTTGAGCAAAATTATCTCTCATTCTTTTTA
TCAGATGATTATCACAACTCTGANgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017622-exon-sc0000271-1491911889:278874..279133 | TCONS_00017622-exon-sc0000271-1491911889:278874..279133 | Clytia hemisphaerica | exon |
| TCONS_00017622-exon-sc0000271-1510915933:278874..279133 | TCONS_00017622-exon-sc0000271-1510915933:278874..279133 | Clytia hemisphaerica | exon |
| TCONS_00017622-exon-sc0000271-1575043694:278874..279133 | TCONS_00017622-exon-sc0000271-1575043694:278874..279133 | Clytia hemisphaerica | exon |
| TCONS_00017622-exon-sc0000271-1491911889:280510..280605 | TCONS_00017622-exon-sc0000271-1491911889:280510..280605 | Clytia hemisphaerica | exon |
| TCONS_00017622-exon-sc0000271-1510915933:280510..280605 | TCONS_00017622-exon-sc0000271-1510915933:280510..280605 | Clytia hemisphaerica | exon |
| TCONS_00017622-exon-sc0000271-1575043694:280510..280605 | TCONS_00017622-exon-sc0000271-1575043694:280510..280605 | Clytia hemisphaerica | exon |
| TCONS_00017622-exon-sc0000271-1491911889:285778..285890 | TCONS_00017622-exon-sc0000271-1491911889:285778..285890 | Clytia hemisphaerica | exon |
| TCONS_00017622-exon-sc0000271-1510915933:285778..285890 | TCONS_00017622-exon-sc0000271-1510915933:285778..285890 | Clytia hemisphaerica | exon |
| TCONS_00017622-exon-sc0000271-1575043694:285778..285890 | TCONS_00017622-exon-sc0000271-1575043694:285778..285890 | Clytia hemisphaerica | exon |
| TCONS_00017622-exon-sc0000271-1491911889:286128..286150 | TCONS_00017622-exon-sc0000271-1491911889:286128..286150 | Clytia hemisphaerica | exon |
| TCONS_00017622-exon-sc0000271-1510915933:286128..286150 | TCONS_00017622-exon-sc0000271-1510915933:286128..286150 | Clytia hemisphaerica | exon |
| TCONS_00017622-exon-sc0000271-1575043694:286128..286150 | TCONS_00017622-exon-sc0000271-1575043694:286128..286150 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000271 | supercontig | sc0000271:278874..286150 + |
Blast
The following BLAST results are available for this feature:
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