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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017623 ID=TCONS_00017623|Name=TCONS_00017623|organism=Clytia hemisphaerica|type=transcript|length=252bp
AGGATACGTAGTCAGGAGGACACACTGCTGGTTCAAAAGTAACAACATTA
GTATCAACAAACTTAATTGGTAAAGTTGAAGGGTAGCGACCGTCGATTTG
TCAGCTTTTGGAACAGTTTTAGTGATCCACACACGCCAACAATTTTATTA
ACACCAACATCAGATGATAAGATGTCCACAACAGCTCTGTCAATGAGTGA
TGAAAATGATGTTTTCTCCAGTAATGGAGATGATTATCACAACTCTGANg
ac Run BLAST on NCBI transcript from alignment at sc0000271:281995..286150+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017623 ID=TCONS_00017623|Name=TCONS_00017623|organism=Clytia hemisphaerica|type=transcript|length=4156bp|location=Sequence derived from alignment at sc0000271:281995..286150+ (Clytia hemisphaerica)
AGGATACGTAGTCAGGAGGACACACTGCTGGTTCAAAAGTAACAACATTA
GTATCAACAAACTTAATTGGTAAAGTTGAAGGGTAGCGACCGTCGATTTG
TCAGCTTTTGGAACAGGTTAATGGAAGAAAAGTATAGTAGGAGTAAAAGT
AGAATTTTCGTATTATTTGTGCTCCTGTACGAGGGGGCCAAAAGGGACCG
TAGACACATCTTTCTCTGAGATCTCTCTCTCTGAGAGACTCTCTTCACAG
AAAGACCTTATAGAGTTTAAGATTTCAAGAGAGAAAAGAGTGTGGTTATT
AACTAACTGCGGGTGGGATGTTTCACCATTGTTAATAAATTTTGGATATG
TTTTCAAAGTGTTTATAATGCACGGCGGTTTTGGATGGAAATAAAATGTT
CCCTAATTGAGGTTACACGAACGGCAGGGGCAgagttttaaattctttta
gtTTGCAAAGAAATCTACACTACTACTGCAGTGCAAGTGTTACACGGCCT
AGTGATGGATCAATGTAAAACAATTTAGTCTTCTTACACTTTATGGCTtt
aaagcaatttagaaaagGGCAAATTGTTGGCGATGACTATatgatatttt
gtttattttgactaTTTCAAATGAGACGAAATATGGTTAGACAAAAGTCG
ACAGGAACGTAACTTTTATTTAAGGTGAATTTCTCGTAATAGAGGTACGT
TTCGTCGTCCTCAGAAGCTCAGTTCCACGCCTCTTTGAATAGGGCGTGAC
ACCCCTTTAAAGCACCCTTAGAAAGTTTTCCAGTCCAGTGTTCCTTTCTC
TTGAAACCTTCCACGAATCTCGTTTGcatgttttctatttctatacAAGC
TGTGAATGAGAGTTTATATCGCAACATAGCTTCCGTTACGTCACACCGAG
CGATGTTATAACATGCATAAAACAGCTAATCTCATTGTAACTATCATAAC
ATGTCCTACAATATGTTATAtgttatttttttgataattggATAATAATA
CTTAATACGTATTATAGCCTTTTTGTATCTTAACCGGCCAGGACGTCGCG
TTATATTTTGATCTGTTGAACTACAGCTGATTCCGACTCTctatttcgat
ttttgagggTTCTATAagaccaATAAGAAATGTAAAAAGTAAACGGGACC
ATAGCTTTTTTACGCATTATAGAAAGTTCGAAATCAAGGGACCACGTATA
CAAACAGCGCATCCCATTCTAGAAATTGGATAACGTGAAAGTGGCCTTCT
CGAAGGCATGTGGGCACtacaatacaaaaaaatatttgagtaACCATCGA
ACCATGTTTCATGTACCACTATGTATATATTTTGCGCGTGCGTTGATTCA
CAGAAAAATACTTaagatattttctaaatttttctaaaagatctTCACTT
GATGTTCATCAGAGATATTTTGCCTTGCCTTCCATTTTCCAAGAACATTA
CTTTTTATTCGCATTCTTGTGAAATGCGCAGCAGAAGTTTCGATAAATTT
CTGAACTggaatcaaaatattttggaaaacctATAAAGGATAATCCCATa
atattttcaatagtttgaacTCAAAGCATTTATCAcctatatttaaaaaa
atacatgtGTAAAGCTACGCGTTCTGCTTTTAAAAGAAAGACGCAGAATT
TAAGCTTGAAGCTCAACGAGAGAGAAATTTATGCAAAATAACAGGTTTTA
GTAATTCTTACGTAAACCTTTTGATGTCAAAGGCTGGAATTTCGGAAAAA
GCAAACGGTTTGAGCTTAGAGCTACTATATCAATCTATGGGTTTCTATAC
ATGGCTTATGGTacttatgataaaaataaaaattgaaaaataataactAC
CGTCAATTTGATGAGAGAGTTATTCAGTTTGTTAGCCGTCAAGGTTACTG
AAACGCATTGTTTgaggaaaaattttaaacccagGGTAACGCAAACAAAA
AATTGAGTCCGCGGCAGGATAAACTtgcgaaaaaaaacaagctgAACAAC
TAAACAAAGGAAAGCTAAGAAATTTCTCAGTTAAAGGTGGAAAGGTTggt
gtaaaatttgaaagtAAAGATCAATTTAGATGGGTTAATATTGTataaaa
attttttggaaaaagcaaAGGGATTTTTGATACACCTATTTTGTAacgaa
atttaattttggcagaACAATGGATTATCCTCTGTAAGTAAAGAACATTC
TTCAAAAATCATTCCTTATTAGTTTGCCTTAAATTAACTTAAAGTTGTGG
GTTGTTTTATTCACCCAAAATTTTTCAGGCAAAAGTAGTACTGTAAAATT
TATCTTAAAACTTATCAGAGTATTTTATCTGTGTTAGCAACTCagttaat
aaaatcgaacgtttACCGATTAGGACAAATTAGACAACAACATTGACAGC
ATCAAATTAAGGAATATACAATTGACGAGCTCTCAAGTTGGAAAATCTAC
AGTGTGTCCGAAAAAAGTGgaacagaaagaaaaacagaTTTTATGTAAAC
CAAAACTTCTATACCGAGCGTGATTTTAAATCGAAATCCAATGTTAATTC
aatatgttgaacggtgaaataGAATGCGGATATTATAATTTGATTATGCT
CGACTTCAGTAGTGTACGGGctttgagaattttattttatataaaatCGG
TTACGCTTATTTTCCGGACACACTCTATAAAAAATCCAAAGGATTACTTG
TGAAAGACAGTCAGCCAGATAGAAGTTTAGAGAAATGAATGGATATTAAT
TAAAGTAAGCTTACATTTTTAGTGTGATTTCAAGTGCTTGCTGTGATCTA
TGCAACCAATTTTTATACCACTGCTATTCTTTCACGATCTTTCGAAATAC
TTGGTCATGCCTAGAAAGATTGGATGTTGTGAAATAAGTTTACAAAATAA
TTCATACGCATGCTGGTAGAAACCTATAGAAATAcaactttaaaaatata
tttcaatcatTTCTGACCAACCTACTATCGAAATATTAGGACGATATCAC
TTAGTTCTAGAATGGTCAGGACAACTACCGTAAACAGAAATTGTTCTTTT
CGttcatttcattaaaaacactcTCGGGGGGAATATTTGTAAATctaggt
ttttttttatatggTTTTTAAGTTTACTTGTGAAGGCTCATTTTACCCAT
TGGCCATTTTGGCCCGACTTTGATGTGCTGTAAAACTTGAAATATATGCC
AAGCCAGCAAACTTTTTCTTGAGTAATAATTTTCTCCAATTTCAGAAAAT
CTTCACTTTTCACTTacattcattttcaattttaaaatttttttgaggaa
tttttataaaatcccactttgaattttttttccaatctcTCAATACTATG
TTTGGGTGATTTAAAATAGAAAGTCTCGTCTGAGTGAGGTCATCTTACTA
TTCTTGACTGCTTGATGATGACTgcgtcaaaaattaaaaagatcctAGGT
TTATCTAAGTAAAAAAGGGTTTAGCAAAATTATGTTGCAATATGTAATTT
GAATAAATACTCCGTGCCAAACATGAATATCCAAGTTCACGCTGTCACAC
TGTTTCTGTCTTTAGAGTTTGATTTCTTGACATTCTCAGACAATTCACAA
TTAACCGAATTCTTCATCAAAAAAAGTATCATTTGAACATGATAACATCT
CTGGCTGTAGGCTTTGTATATATGATAGCCTATAAAGTAATCTACTAATA
TAAAAAATCGGCTCATTTGGGTGACTGATATCCAAAAATTTTCCGTTTTC
TACTGATGTATTTGTACCCTGTTCTTTTCACAGTTTTAGTGATCCACACA
CGCCAACAATTTTATTAACACCAACATCAGATGATAAGATGTCCACAACA
GCTCTGTCAATGAGTGATGAAAATGATGTTTTCTCCAGTAATGGAGGTAA
GTTCACCTACCAAAATAGTTGATAGCTTgtcaataaaaattcattgggcC
AAATTCGTGTAGAATTTCGGAGTCTAAAATAATCTACCGTTTAAGCGATA
GATTTCCGTGGATCAGTGCCGTTTTAAGAACGTCGAAACTATGATTAGTT
TATCTTTCTAACAGTTTTCTTCACTGAAAATATTCTAATACATCAATCAG
TTGAGCAAAATTATCTCTCATTCTTTTTATCAGATGATTATCACAACTCT
GANgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017623-exon-sc0000271-1491911889:281995..282110 | TCONS_00017623-exon-sc0000271-1491911889:281995..282110 | Clytia hemisphaerica | exon |
| TCONS_00017623-exon-sc0000271-1510915933:281995..282110 | TCONS_00017623-exon-sc0000271-1510915933:281995..282110 | Clytia hemisphaerica | exon |
| TCONS_00017623-exon-sc0000271-1575043694:281995..282110 | TCONS_00017623-exon-sc0000271-1575043694:281995..282110 | Clytia hemisphaerica | exon |
| TCONS_00017623-exon-sc0000271-1491911889:285778..285890 | TCONS_00017623-exon-sc0000271-1491911889:285778..285890 | Clytia hemisphaerica | exon |
| TCONS_00017623-exon-sc0000271-1510915933:285778..285890 | TCONS_00017623-exon-sc0000271-1510915933:285778..285890 | Clytia hemisphaerica | exon |
| TCONS_00017623-exon-sc0000271-1575043694:285778..285890 | TCONS_00017623-exon-sc0000271-1575043694:285778..285890 | Clytia hemisphaerica | exon |
| TCONS_00017623-exon-sc0000271-1491911889:286128..286150 | TCONS_00017623-exon-sc0000271-1491911889:286128..286150 | Clytia hemisphaerica | exon |
| TCONS_00017623-exon-sc0000271-1510915933:286128..286150 | TCONS_00017623-exon-sc0000271-1510915933:286128..286150 | Clytia hemisphaerica | exon |
| TCONS_00017623-exon-sc0000271-1575043694:286128..286150 | TCONS_00017623-exon-sc0000271-1575043694:286128..286150 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000271 | supercontig | sc0000271:281995..286150 + |
Blast
The following BLAST results are available for this feature:
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