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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017624 ID=TCONS_00017624|Name=TCONS_00017624|organism=Clytia hemisphaerica|type=transcript|length=311bp
GGAAAGCTAAGAAATTTCTCAGTTAAAGGTGGAAAGGTTggtgtaaaatt
tgaaagtAAAGATCAATTTAGATGGGTTAATATTGTataaaaattttttg
gaaaaagcaaAGGGATTTTTGATACACCTATTTTGTAacgaaatttaatt
ttggcagaACAATGGATTATCCTCTTTTTAGTGATCCACACACGCCAACA
ATTTTATTAACACCAACATCAGATGATAAGATGTCCACAACAGCTCTGTC
AATGAGTGATGAAAATGATGTTTTCTCCAGTAATGGAGATGATTATCACA
ACTCTGANgac Run BLAST on NCBI transcript from alignment at sc0000271:284003..286150+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017624 ID=TCONS_00017624|Name=TCONS_00017624|organism=Clytia hemisphaerica|type=transcript|length=2148bp|location=Sequence derived from alignment at sc0000271:284003..286150+ (Clytia hemisphaerica)
GGAAAGCTAAGAAATTTCTCAGTTAAAGGTGGAAAGGTTggtgtaaaatt
tgaaagtAAAGATCAATTTAGATGGGTTAATATTGTataaaaattttttg
gaaaaagcaaAGGGATTTTTGATACACCTATTTTGTAacgaaatttaatt
ttggcagaACAATGGATTATCCTCTGTAAGTAAAGAACATTCTTCAAAAA
TCATTCCTTATTAGTTTGCCTTAAATTAACTTAAAGTTGTGGGTTGTTTT
ATTCACCCAAAATTTTTCAGGCAAAAGTAGTACTGTAAAATTTATCTTAA
AACTTATCAGAGTATTTTATCTGTGTTAGCAACTCagttaataaaatcga
acgtttACCGATTAGGACAAATTAGACAACAACATTGACAGCATCAAATT
AAGGAATATACAATTGACGAGCTCTCAAGTTGGAAAATCTACAGTGTGTC
CGAAAAAAGTGgaacagaaagaaaaacagaTTTTATGTAAACCAAAACTT
CTATACCGAGCGTGATTTTAAATCGAAATCCAATGTTAATTCaatatgtt
gaacggtgaaataGAATGCGGATATTATAATTTGATTATGCTCGACTTCA
GTAGTGTACGGGctttgagaattttattttatataaaatCGGTTACGCTT
ATTTTCCGGACACACTCTATAAAAAATCCAAAGGATTACTTGTGAAAGAC
AGTCAGCCAGATAGAAGTTTAGAGAAATGAATGGATATTAATTAAAGTAA
GCTTACATTTTTAGTGTGATTTCAAGTGCTTGCTGTGATCTATGCAACCA
ATTTTTATACCACTGCTATTCTTTCACGATCTTTCGAAATACTTGGTCAT
GCCTAGAAAGATTGGATGTTGTGAAATAAGTTTACAAAATAATTCATACG
CATGCTGGTAGAAACCTATAGAAATAcaactttaaaaatatatttcaatc
atTTCTGACCAACCTACTATCGAAATATTAGGACGATATCACTTAGTTCT
AGAATGGTCAGGACAACTACCGTAAACAGAAATTGTTCTTTTCGttcatt
tcattaaaaacactcTCGGGGGGAATATTTGTAAATctaggttttttttt
atatggTTTTTAAGTTTACTTGTGAAGGCTCATTTTACCCATTGGCCATT
TTGGCCCGACTTTGATGTGCTGTAAAACTTGAAATATATGCCAAGCCAGC
AAACTTTTTCTTGAGTAATAATTTTCTCCAATTTCAGAAAATCTTCACTT
TTCACTTacattcattttcaattttaaaatttttttgaggaatttttata
aaatcccactttgaattttttttccaatctcTCAATACTATGTTTGGGTG
ATTTAAAATAGAAAGTCTCGTCTGAGTGAGGTCATCTTACTATTCTTGAC
TGCTTGATGATGACTgcgtcaaaaattaaaaagatcctAGGTTTATCTAA
GTAAAAAAGGGTTTAGCAAAATTATGTTGCAATATGTAATTTGAATAAAT
ACTCCGTGCCAAACATGAATATCCAAGTTCACGCTGTCACACTGTTTCTG
TCTTTAGAGTTTGATTTCTTGACATTCTCAGACAATTCACAATTAACCGA
ATTCTTCATCAAAAAAAGTATCATTTGAACATGATAACATCTCTGGCTGT
AGGCTTTGTATATATGATAGCCTATAAAGTAATCTACTAATATAAAAAAT
CGGCTCATTTGGGTGACTGATATCCAAAAATTTTCCGTTTTCTACTGATG
TATTTGTACCCTGTTCTTTTCACAGTTTTAGTGATCCACACACGCCAACA
ATTTTATTAACACCAACATCAGATGATAAGATGTCCACAACAGCTCTGTC
AATGAGTGATGAAAATGATGTTTTCTCCAGTAATGGAGGTAAGTTCACCT
ACCAAAATAGTTGATAGCTTgtcaataaaaattcattgggcCAAATTCGT
GTAGAATTTCGGAGTCTAAAATAATCTACCGTTTAAGCGATAGATTTCCG
TGGATCAGTGCCGTTTTAAGAACGTCGAAACTATGATTAGTTTATCTTTC
TAACAGTTTTCTTCACTGAAAATATTCTAATACATCAATCAGTTGAGCAA
AATTATCTCTCATTCTTTTTATCAGATGATTATCACAACTCTGANgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017624-exon-sc0000271-1491911889:284003..284177 | TCONS_00017624-exon-sc0000271-1491911889:284003..284177 | Clytia hemisphaerica | exon |
| TCONS_00017624-exon-sc0000271-1510915933:284003..284177 | TCONS_00017624-exon-sc0000271-1510915933:284003..284177 | Clytia hemisphaerica | exon |
| TCONS_00017624-exon-sc0000271-1575043694:284003..284177 | TCONS_00017624-exon-sc0000271-1575043694:284003..284177 | Clytia hemisphaerica | exon |
| TCONS_00017624-exon-sc0000271-1491911889:285778..285890 | TCONS_00017624-exon-sc0000271-1491911889:285778..285890 | Clytia hemisphaerica | exon |
| TCONS_00017624-exon-sc0000271-1510915933:285778..285890 | TCONS_00017624-exon-sc0000271-1510915933:285778..285890 | Clytia hemisphaerica | exon |
| TCONS_00017624-exon-sc0000271-1575043694:285778..285890 | TCONS_00017624-exon-sc0000271-1575043694:285778..285890 | Clytia hemisphaerica | exon |
| TCONS_00017624-exon-sc0000271-1491911889:286128..286150 | TCONS_00017624-exon-sc0000271-1491911889:286128..286150 | Clytia hemisphaerica | exon |
| TCONS_00017624-exon-sc0000271-1510915933:286128..286150 | TCONS_00017624-exon-sc0000271-1510915933:286128..286150 | Clytia hemisphaerica | exon |
| TCONS_00017624-exon-sc0000271-1575043694:286128..286150 | TCONS_00017624-exon-sc0000271-1575043694:286128..286150 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000271 | supercontig | sc0000271:284003..286150 + |
Blast
The following BLAST results are available for this feature:
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