TCONS_00017627 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017627
Unique NameTCONS_00017627
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2955

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017627 ID=TCONS_00017627|Name=TCONS_00017627|organism=Clytia hemisphaerica|type=transcript|length=2955bp
ttttagaaaaaaacaagcATAAGTCAAAAACCGAAAATAACAAACCTTAT
ACATAAAAATTcttatatataatatattatgTCAAGACAGGGGACGCCAC
AACGCCCAAATGGAGGAGCACCACAAGGAAAAATACAACCATTTAAGCTT
GTTTTACTCGGTGAATCGGCTGTTGGAAAATCCAGTTTAGTATTACGGTT
TGTTAAAGGACAGTTTCACGAATATCAAGAAAGTACAATTGGAGCTGCAT
TTTTAACACAGACAGTATGTTTCGATGACACCACCGTCAAATTTGAGATT
TGGGATACAGCAGGACAAGAAAGATACCACAGTCTAGCGCCAATGTATTA
TCGTGGATCACAGGCTGCAATTGTCGTATATGATATCACGAATCCAGAGT
CATTCACACGAGCGAAAAATTGGGTCAAAGAATTACACAGGCAAGCAAGT
GCTAATATCGTAATATCTCTGGCTGGAAATAAAGCTGATCTTGGAAATAA
AAGAATGGTCGAATATGATgaAGCACAAGCATACGCAGAGGAAAACGGTC
TACTGTTCATGGAAACGTCTGCAAAAACGGCTATGAACGTCAATGATCTG
TTCTTAGCTATTGcCAAAAAATTACCCAAAAATACAGATTCACAAGGTGG
TGGCGGCCAACGGGCGGGAGGACCTGGTATCGCCCTAAACGAACAAACGG
AACAGCAAAAGTCTGGTTGTTGCAAGTAAAAAAGGAGATGAAAACAATTG
TGGTTTGTTTTTACTGCTTTGCTACTGCTGCTGAATCTATTTTTCTTGTA
TCATATTAATATAAATATTATTAAGAGATCGAATATCGAGTAAAAAAAGA
TCAACACCATACCACGATGACTTGGTCGTTATCATTTAAGCTTTCTTGAT
AGACTATAGAAAGGGCAGAAAAAATCGGAAACCGGACTTGGATAAAATGC
CATTATAGATATCAATTCAATTCACATGTTTCAAGATTTTTAGTAACTTT
AACAGTCATTATATTCAAGAACAGCCTTTTTCCCTAAACGATATTACATG
CGCTGATAATGTTTCTTGTCCATAAAGGGTATgcgtttttttgtaaaagg
tatTTAGTGTTTTAGAGGTTAttgttttttatacaaaaactaacaattcc
attttttttgttgagtcagtccctttttttaaaggacaaaaaatttaaaa
gttggTAAACATTCCCAAAATTTCATCCACACAATCATAGAAATTACTTA
TATTACTTTTAGTATTAGTatattatttttgttgttttttgtttctttgt
caatttgttttcataattttattttaagatttttttttcagaaattaagT
TTTCTCGCTCCCTTGTCATGTAAGGACTTCAATGGCATAAGCGCATTCAT
CCCTTAACTAAGTACGCCCCCAACTAAATAACAACAAAAGTATAACATgt
ataaaaaaagttgttttataTATATTGCCATTTTTGAAATGTTATTTTTC
GTTGCTTACCTGTTGTTTTTTCTATAGCtacatttgttttatttttgttt
gtgcCTAATTTTAATGACAAAGAACTTAGAAACTATTAGATCAATGAATG
TTAATTCGATTTGAAATTCTAACGAAACTGTGTATAGTTGATTAAAGTCA
ATAATTGATATATAAAAAGGGATGAAAGAATCTTAAATCTACTGTCAATA
AATCCTACagacaataaaacaaaacaaaatagccTATTGATCTTTTAGTT
TTCATTCTTAATTATTCTGATTCTGCACTGCTTAGTTTAGCGCTATTAGG
ATAAAGGAAATATAAAAGTTGTAGCTTAAGGCCATGTTGATGGCTAACTG
TGATTTAGACCTTAACTTTTAATTCTACTTACACGCATGTGGACCTATAG
ATTTAGAATATCTGGGGACGATAatcaggggggggtcggtagtaaaatct
cagacatatatgagtagtaaaaggatttttacgaatttttacaaaccacc
acccagactcttggaagaggtattttactaccctggtagtaaaagttttt
gggacaatttgtcatagaGACCACcaattttttggttgcttttcagaatg
attttacaaaaaaagctaaaaaatgattatttctgtgacacatttttcac
ttagtgcaaaaattaatgttttgcccttagaattcaaatgttttttatat
tgacaaaaaattcgagaattttttgtttacagcaaacaactttccaacag
aaaattttttcaaattataaaaattttcagattttttcataaaagtcatc
taaaaaattaaaagaattacaaaattagcaaaaatttgctaattttacca
gttttaactacccaggtagttattttttttcaacatttaacacatagata
ccacccattttagtatttaactaccctgggtagtaaaagtctttttcaat
ttttcgtcacaccaccaccgtagtaaacgtcattatgtctgagattttac
taccgacccccccccctgcgaTAATATGCacaaacttttgattttgacat
tGATATTCGAGAGTGATTTTTATATGCCTGTCAATATAATAAGCCTTCCA
ACAGAATTCAAGTGGGATTCAAACTTTTGCACAAAGAGATAGAAAGATCC
TTTTTTATAGGGTGGCAattattttttaaccttttcaaatattatgtttt
ttttgtgcCGTGAATCAATTGTAATTTAagagaaaatcaataaaatcgtC
AATTTTCTTCTATTTATTATTGTgtcattttcttgattttcaatcCTAAA
TTTTTAGTTGTTAGAGGGATGACAGTCCACCATTTCTTTCGTAAgatcat
ggaggtaataaagatatagattgagagaaaacgtctcggtaatgatctaa
atggtcgttgaaatcttttataaatctattcaaagcggcttttctttgat
gtacc
Run BLAST on NCBI

protein sequence of TCONS_00017627-protein

>TCONS_00017627-protein ID=TCONS_00017627-protein|Name=TCONS_00017627-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MSRQGTPQRPNGGAPQGKIQPFKLVLLGESAVGKSSLVLRFVKGQFHEYQ
ESTIGAAFLTQTVCFDDTTVKFEIWDTAGQERYHSLAPMYYRGSQAAIVV
YDITNPESFTRAKNWVKELHRQASANIVISLAGNKADLGNKRMVEYDEAQ
AYAEENGLLFMETSAKTAMNVNDLFLAIAKKLPKNTDSQGGGGQRAGGPG
IALNEQTEQQKSGCCK
Run BLAST on NCBI

transcript from alignment at sc0000271:332310..337415+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017627 ID=TCONS_00017627|Name=TCONS_00017627|organism=Clytia hemisphaerica|type=transcript|length=5106bp|location=Sequence derived from alignment at sc0000271:332310..337415+ (Clytia hemisphaerica)
ttttagaaaaaaacaagcATAAGTCAAAAACCGAAAATAACAAACCTTAT
ACATAAAAATTcttatatataatatattatgTCAAGACAGGGGACGCCAC
AACGCCCAAATGGAGGAGCACCACAAGGAAAAATACAACCATTTAAGCTT
GTTTTACTCGGTAAGTCTTGTTGGACTCTCATAATGATGATGGACTCTCC
AGTTGATTCCCATGTAGTTGATTTTTTGTGCATGTCAGGTATTGAAGTTA
GGCCAACAACCTGCATTGTATGTTTGTTTATGCTGTTGTCAACTTGAGCT
GTGCTAAACGCAGCAGATCACGATGTGTAAACCAGCTTTACACCAAGATA
CCTGTCAACCCATGTCTTATCCATGTGACCCAAATTACCTTATTTTTCAC
ACCCACATAGGCAAGCATCTGGTGTAATTATtgtatgaaattttaaaatg
tcaaGTGCCCTTTGTCCTAAATTTCATTTCTTTGCCATTCTTTGTCACTG
AAACAGACTGAAGTTATGCAATGTTACCAGATTAAAACAGAAGTACGGGC
TTTCTAACAAATAAGTTTAAAATGTACAGTTTGAAAACATAACTGGAAAT
TTTACTCTGTCTCTCTTATAATTTGAGACTAATTTTAACCTCTTCTTACC
TTTCAGGTGAATCGGCTGTTGGAAAATCCAGTTTAGTATTACGGTTTGTT
AAAGGACAGTTTCACGAATATCAAGAAAGTACAATTGGAGGTTTGTAACA
AACAGCACATCTATATTTTTCCATGAGGACCAATTTTGCAATACTGATAA
AgataaaatagttttaaaaaaatgcaaCATTATCGAATAttaaaattagg
aaaagtgattAATGTTGCATAATCTCCCTGGATTCTGGGGGAGGGTtgag
gattttcagatttttaaaaaaaggtagGGGTTGGGTTGAGGAAAAATTTC
CAGTGGGGGTAAACCTATGTAGTTGGGGTGAATTTTTCAGGGGGGTTAGA
GGGGTCTTGCCCACTATGTGttggaaaaatttggaaaattttttcttgCC
ACCCACAGCACTCGcaaattttactcaaaattaGCTTTCTAATCTACAGT
CGACCATTTTAAACGTATGCTTGCATGTGCTTTAGCCTCTAATTCATGGT
TAGATTTGTGCTATATTATGTGACATGGCAtctttttatgacattttttt
ctccttttctaCAGCTGCATTTTTAACACAGACAGTATGTTTCGATGACA
CCACCGTCAAATTTGAGATTTGGGATACAGCAGGACAAGAAAGATACCAC
AGTCTAGCGCCAATGTATTATCGTGGATCACAGGCTGCAATTGTCGTATA
TGATATCACGAATCCAGtaattttgattatattttcTATACCAAGTATAA
CACATGGAAAATTATTAGAGTTTGATGGCTAACCATGTCCAATGTGCGTA
GTATATGCACCCCCCCATACAAGGGGAGGTTTTGTTGATTTCAGTTTCGA
ATCTTTAGGTGGCAACTGATTTTTTAAGGTGGGTCTAACGTGATTTTGTA
GTAAAATTGATCATCATCACTCtctttttccattttaatttttcgatttt
caatctcaaaagatagccatcaaagccttattcTTTTTACTGGGCCACCT
GGCACTAAACTTATCCTTTAAGACCTTTAAGAGTGTTCTACAAATTGTAA
AAATGACCTCCCTTCTGTAATAATTTCAGGAATACTATTGCCCTGACTTT
GTCATTTTTCAGACCAACACCTAAATGGATATAATCCAAAGTTTTAGTAC
AAATTCTTTTCCAAAGTTGAGAtactttgatttgaaatttgtacaAATAG
AAATACAAGTCAATACAAGTCTTCAAACCATCTTCATGTTGAATTTCCAT
TGGttttaagcaaagaaaatttcaaaatgaatttatCTATCCAAAATTAT
ACATTAACGTACTGCTCTTCAACCTTAGGAGTCATTCACACGAGCGAAAA
ATTGGGTCAAAGAATTACACAGGCAAGCAAGTGCTAATATCGTAATATCT
CTGGCTGGAAATAAAGCTGATCTTGGAAATAAAAGAATGGTCGAATATGA
TGTAAGAtggctttattttttttgctgacttttaaGATGTTGGATTTGAT
TTTGTAGAAATATCAGATGATATAAGTTAATATGATgatcttttttataa
taccTTCTTGCTCTCTTCGTCATCAGATGATGCTTTTAGAAATAGATTTA
GCTTACCCTCCAATAATTATTGATTTCATTCATGACAACAAGTTCAGTTC
TCCTGTATTTTGTTGTCAACCAGAAAaacaattgattgattgattgatca
acgattgattgattgattgattgattgattgattgatcaacgattaattg
attgattgatcaacgattgattgattgattgatcaacgattgattgattg
attgattgattgatttttttaatggacagttttaattttattttatttta
taggaAGCACAAGCATACGCAGAGGAAAACGGTCTACTGTTCATGGAAAC
GTCTGCAAAAACGGCTATGAACGTCAATGATCTGTTCTTAGCTATTGGTA
TgtgcattgaaaaaaatcattttctcaaagattctttttttaCGTCGAAA
ACTCTCAAATTTGCTTTCTTCGATTAATTTCATTGCCAAGTTTAATTTTC
GTAAGCCGCTAAACTTTGACATTTGGCCTTATGGtctattttaattttct
ttttttttctacagcCAAAAAATTACCCAAAAATACAGATTCACAAGGTG
GTGGCGGCCAACGGGCGGGAGGACCTGGTATCGCCCTAAACGAACAAACG
GAACAGCAAAAGTCTGGTTGTTGCAAGTAAAAAAGGAGATGAAAACAATT
GTGGTTTGTTTTTACTGCTTTGCTACTGCTGCTGAATCTATTTTTCTTGT
ATCATATTAATATAAATATTATTAAGAGATCGAATATCGAGTAAAAAAAG
ATCAACACCATACCACGATGACTTGGTCGTTATCATTTAAGCTTTCTTGA
TAGACTATAGAAAGGGCAGAAAAAATCGGAAACCGGACTTGGATAAAATG
CCATTATAGATATCAATTCAATTCACATGTTTCAAGATTTTTAGTAACTT
TAACAGTCATTATATTCAAGAACAGCCTTTTTCCCTAAACGATATTACAT
GCGCTGATAATGTTTCTTGTCCATAAAGGGTATgcgtttttttgtaaaag
gtatTTAGTGTTTTAGAGGTTAttgttttttatacaaaaactaacaattc
cattttttttgttgagtcagtccctttttttaaaggacaaaaaatttaaa
agttggTAAACATTCCCAAAATTTCATCCACACAATCATAGAAATTACTT
ATATTACTTTTAGTATTAGTatattatttttgttgttttttgtttctttg
tcaatttgttttcataattttattttaagatttttttttcagaaattaag
TTTTCTCGCTCCCTTGTCATGTAAGGACTTCAATGGCATAAGCGCATTCA
TCCCTTAACTAAGTACGCCCCCAACTAAATAACAACAAAAGTATAACATg
tataaaaaaagttgttttataTATATTGCCATTTTTGAAATGTTATTTTT
CGTTGCTTACCTGTTGTTTTTTCTATAGCtacatttgttttatttttgtt
tgtgcCTAATTTTAATGACAAAGAACTTAGAAACTATTAGATCAATGAAT
GTTAATTCGATTTGAAATTCTAACGAAACTGTGTATAGTTGATTAAAGTC
AATAATTGATATATAAAAAGGGATGAAAGAATCTTAAATCTACTGTCAAT
AAATCCTACagacaataaaacaaaacaaaatagccTATTGATCTTTTAGT
TTTCATTCTTAATTATTCTGATTCTGCACTGCTTAGTTTAGCGCTATTAG
GATAAAGGAAATATAAAAGTTGTAGCTTAAGGCCATGTTGATGGCTAACT
GTGATTTAGACCTTAACTTTTAATTCTACTTACACGCATGTGGACCTATA
GATTTAGAATATCTGGGGACGATAatcaggggggggtcggtagtaaaatc
tcagacatatatgagtagtaaaaggatttttacgaatttttacaaaccac
cacccagactcttggaagaggtattttactaccctggtagtaaaagtttt
tgggacaatttgtcatagaGACCACcaattttttggttgcttttcagaat
gattttacaaaaaaagctaaaaaatgattatttctgtgacacatttttca
cttagtgcaaaaattaatgttttgcccttagaattcaaatgttttttata
ttgacaaaaaattcgagaattttttgtttacagcaaacaactttccaaca
gaaaattttttcaaattataaaaattttcagattttttcataaaagtcat
ctaaaaaattaaaagaattacaaaattagcaaaaatttgctaattttacc
agttttaactacccaggtagttattttttttcaacatttaacacatagat
accacccattttagtatttaactaccctgggtagtaaaagtctttttcaa
tttttcgtcacaccaccaccgtagtaaacgtcattatgtctgagatttta
ctaccgacccccccccctgcgaTAATATGCacaaacttttgattttgaca
ttGATATTCGAGAGTGATTTTTATATGCCTGTCAATATAATAAGCCTTCC
AACAGAATTCAAGTGGGATTCAAACTTTTGCACAAAGAGATAGAAAGATC
CTTTTTTATAGGGTGGCAattattttttaaccttttcaaatattatgttt
tttttgtgcCGTGAATCAATTGTAATTTAagagaaaatcaataaaatcgt
CAATTTTCTTCTATTTATTATTGTgtcattttcttgattttcaatcCTAA
ATTTTTAGTTGTTAGAGGGATGACAGTCCACCATTTCTTTCGTAAgatca
tggaggtaataaagatatagattgagagaaaacgtctcggtaatgatcta
aatggtcgttgaaatcttttataaatctattcaaagcggcttttctttga
tgtacc

Coding sequence (CDS) from alignment at sc0000271:332310..337415+

>TCONS_00017627 ID=TCONS_00017627|Name=TCONS_00017627|organism=Clytia hemisphaerica|type=CDS|length=3906bp|location=Sequence derived from alignment at sc0000271:332310..337415+ (Clytia hemisphaerica)
atgTCAAGACAGGGGACGCCACAACGCCCAAATGGAGGAGCACCACAAGG
AAAAATACAACCATTTAAGCTTGTTTTACTCGGTGAATCGGCTGTTGGAA
AATCCAGTTTAGTATTACGGTTTGTTAAAGGACAGTTTCACGAATATCAA
GAAAGTACAATTGGAGCTGCATTTTTAACACAGACAGTATGTTTCGATGA
CACCACCGTCAAATTTGAGATTTGGGATACAGCAGGACAAGAAAGATACC
ACAGTCTAGCGCCAATGTATTATCGTGGATCACAGGCTGCAATTGTCGTA
TATGATATCACGAATCCAGAGTCATTCACACGAGCGAAAAATTGGGTCAA
AGAATTACACAGGCAAGCAAGTGCTAATATCGTAATATCTCTGGCTGGAA
ATAAAGCTGATCTTGGAAATAAAAGAATGGTCGAATATGATgaAGCACAA
GCATACGCAGAGGAAAACGGTCTACTGTTCATGGAAACGTCTGCAAAAAC
GGCTATGAACGTCAATGATCTGTTCTTAGCTATTGcCAAAAAATTACCCA
AAAATACAGATTCACAAGGTGGTGGCGGCCAACGGGCGGGAGGACCTGGT
ATCGCCCTAAACGAACAAACGGAACAGCAAAAGTCTGGTTGTTGCAAGTA
AatgTCAAGACAGGGGACGCCACAACGCCCAAATGGAGGAGCACCACAAG
GAAAAATACAACCATTTAAGCTTGTTTTACTCGGTGAATCGGCTGTTGGA
AAATCCAGTTTAGTATTACGGTTTGTTAAAGGACAGTTTCACGAATATCA
AGAAAGTACAATTGGAGCTGCATTTTTAACACAGACAGTATGTTTCGATG
ACACCACCGTCAAATTTGAGATTTGGGATACAGCAGGACAAGAAAGATAC
CACAGTCTAGCGCCAATGTATTATCGTGGATCACAGGCTGCAATTGTCGT
ATATGATATCACGAATCCAGAGTCATTCACACGAGCGAAAAATTGGGTCA
AAGAATTACACAGGCAAGCAAGTGCTAATATCGTAATATCTCTGGCTGGA
AATAAAGCTGATCTTGGAAATAAAAGAATGGTCGAATATGATgaAGCACA
AGCATACGCAGAGGAAAACGGTCTACTGTTCATGGAAACGTCTGCAAAAA
CGGCTATGAACGTCAATGATCTGTTCTTAGCTATTGcCAAAAAATTACCC
AAAAATACAGATTCACAAGGTGGTGGCGGCCAACGGGCGGGAGGACCTGG
TATCGCCCTAAACGAACAAACGGAACAGCAAAAGTCTGGTTGTTGCAAGT
AAatgTCAAGACAGGGGACGCCACAACGCCCAAATGGAGGAGCACCACAA
GGAAAAATACAACCATTTAAGCTTGTTTTACTCGGTGAATCGGCTGTTGG
AAAATCCAGTTTAGTATTACGGTTTGTTAAAGGACAGTTTCACGAATATC
AAGAAAGTACAATTGGAGCTGCATTTTTAACACAGACAGTATGTTTCGAT
GACACCACCGTCAAATTTGAGATTTGGGATACAGCAGGACAAGAAAGATA
CCACAGTCTAGCGCCAATGTATTATCGTGGATCACAGGCTGCAATTGTCG
TATATGATATCACGAATCCAGAGTCATTCACACGAGCGAAAAATTGGGTC
AAAGAATTACACAGGCAAGCAAGTGCTAATATCGTAATATCTCTGGCTGG
AAATAAAGCTGATCTTGGAAATAAAAGAATGGTCGAATATGATgaAGCAC
AAGCATACGCAGAGGAAAACGGTCTACTGTTCATGGAAACGTCTGCAAAA
ACGGCTATGAACGTCAATGATCTGTTCTTAGCTATTGcCAAAAAATTACC
CAAAAATACAGATTCACAAGGTGGTGGCGGCCAACGGGCGGGAGGACCTG
GTATCGCCCTAAACGAACAAACGGAACAGCAAAAGTCTGGTTGTTGCAAG
TAAatgTCAAGACAGGGGACGCCACAACGCCCAAATGGAGGAGCACCACA
AGGAAAAATACAACCATTTAAGCTTGTTTTACTCGGTGAATCGGCTGTTG
GAAAATCCAGTTTAGTATTACGGTTTGTTAAAGGACAGTTTCACGAATAT
CAAGAAAGTACAATTGGAGCTGCATTTTTAACACAGACAGTATGTTTCGA
TGACACCACCGTCAAATTTGAGATTTGGGATACAGCAGGACAAGAAAGAT
ACCACAGTCTAGCGCCAATGTATTATCGTGGATCACAGGCTGCAATTGTC
GTATATGATATCACGAATCCAGAGTCATTCACACGAGCGAAAAATTGGGT
CAAAGAATTACACAGGCAAGCAAGTGCTAATATCGTAATATCTCTGGCTG
GAAATAAAGCTGATCTTGGAAATAAAAGAATGGTCGAATATGATgaAGCA
CAAGCATACGCAGAGGAAAACGGTCTACTGTTCATGGAAACGTCTGCAAA
AACGGCTATGAACGTCAATGATCTGTTCTTAGCTATTGcCAAAAAATTAC
CCAAAAATACAGATTCACAAGGTGGTGGCGGCCAACGGGCGGGAGGACCT
GGTATCGCCCTAAACGAACAAACGGAACAGCAAAAGTCTGGTTGTTGCAA
GTAAatgTCAAGACAGGGGACGCCACAACGCCCAAATGGAGGAGCACCAC
AAGGAAAAATACAACCATTTAAGCTTGTTTTACTCGGTGAATCGGCTGTT
GGAAAATCCAGTTTAGTATTACGGTTTGTTAAAGGACAGTTTCACGAATA
TCAAGAAAGTACAATTGGAGCTGCATTTTTAACACAGACAGTATGTTTCG
ATGACACCACCGTCAAATTTGAGATTTGGGATACAGCAGGACAAGAAAGA
TACCACAGTCTAGCGCCAATGTATTATCGTGGATCACAGGCTGCAATTGT
CGTATATGATATCACGAATCCAGAGTCATTCACACGAGCGAAAAATTGGG
TCAAAGAATTACACAGGCAAGCAAGTGCTAATATCGTAATATCTCTGGCT
GGAAATAAAGCTGATCTTGGAAATAAAAGAATGGTCGAATATGATgaAGC
ACAAGCATACGCAGAGGAAAACGGTCTACTGTTCATGGAAACGTCTGCAA
AAACGGCTATGAACGTCAATGATCTGTTCTTAGCTATTGcCAAAAAATTA
CCCAAAAATACAGATTCACAAGGTGGTGGCGGCCAACGGGCGGGAGGACC
TGGTATCGCCCTAAACGAACAAACGGAACAGCAAAAGTCTGGTTGTTGCA
AGTAAatgTCAAGACAGGGGACGCCACAACGCCCAAATGGAGGAGCACCA
CAAGGAAAAATACAACCATTTAAGCTTGTTTTACTCGGTGAATCGGCTGT
TGGAAAATCCAGTTTAGTATTACGGTTTGTTAAAGGACAGTTTCACGAAT
ATCAAGAAAGTACAATTGGAGCTGCATTTTTAACACAGACAGTATGTTTC
GATGACACCACCGTCAAATTTGAGATTTGGGATACAGCAGGACAAGAAAG
ATACCACAGTCTAGCGCCAATGTATTATCGTGGATCACAGGCTGCAATTG
TCGTATATGATATCACGAATCCAGAGTCATTCACACGAGCGAAAAATTGG
GTCAAAGAATTACACAGGCAAGCAAGTGCTAATATCGTAATATCTCTGGC
TGGAAATAAAGCTGATCTTGGAAATAAAAGAATGGTCGAATATGATgaAG
CACAAGCATACGCAGAGGAAAACGGTCTACTGTTCATGGAAACGTCTGCA
AAAACGGCTATGAACGTCAATGATCTGTTCTTAGCTATTGcCAAAAAATT
ACCCAAAAATACAGATTCACAAGGTGGTGGCGGCCAACGGGCGGGAGGAC
CTGGTATCGCCCTAAACGAACAAACGGAACAGCAAAAGTCTGGTTGTTGC
AAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009848XLOC_009848Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017627-proteinTCONS_00017627-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017627-exon-sc0000271-1491911889:332310..332469TCONS_00017627-exon-sc0000271-1491911889:332310..332469Clytia hemisphaericaexon
TCONS_00017627-exon-sc0000271-1510915933:332310..332469TCONS_00017627-exon-sc0000271-1510915933:332310..332469Clytia hemisphaericaexon
TCONS_00017627-exon-sc0000271-1575043694:332310..332469TCONS_00017627-exon-sc0000271-1575043694:332310..332469Clytia hemisphaericaexon
TCONS_00017627-exon-sc0000271-1491911889:332966..333049TCONS_00017627-exon-sc0000271-1491911889:332966..333049Clytia hemisphaericaexon
TCONS_00017627-exon-sc0000271-1510915933:332966..333049TCONS_00017627-exon-sc0000271-1510915933:332966..333049Clytia hemisphaericaexon
TCONS_00017627-exon-sc0000271-1575043694:332966..333049TCONS_00017627-exon-sc0000271-1575043694:332966..333049Clytia hemisphaericaexon
TCONS_00017627-exon-sc0000271-1491911889:333524..333675TCONS_00017627-exon-sc0000271-1491911889:333524..333675Clytia hemisphaericaexon
TCONS_00017627-exon-sc0000271-1510915933:333524..333675TCONS_00017627-exon-sc0000271-1510915933:333524..333675Clytia hemisphaericaexon
TCONS_00017627-exon-sc0000271-1575043694:333524..333675TCONS_00017627-exon-sc0000271-1575043694:333524..333675Clytia hemisphaericaexon
TCONS_00017627-exon-sc0000271-1491911889:334288..334410TCONS_00017627-exon-sc0000271-1491911889:334288..334410Clytia hemisphaericaexon
TCONS_00017627-exon-sc0000271-1510915933:334288..334410TCONS_00017627-exon-sc0000271-1510915933:334288..334410Clytia hemisphaericaexon
TCONS_00017627-exon-sc0000271-1575043694:334288..334410TCONS_00017627-exon-sc0000271-1575043694:334288..334410Clytia hemisphaericaexon
TCONS_00017627-exon-sc0000271-1491911889:334813..334906TCONS_00017627-exon-sc0000271-1491911889:334813..334906Clytia hemisphaericaexon
TCONS_00017627-exon-sc0000271-1510915933:334813..334906TCONS_00017627-exon-sc0000271-1510915933:334813..334906Clytia hemisphaericaexon
TCONS_00017627-exon-sc0000271-1575043694:334813..334906TCONS_00017627-exon-sc0000271-1575043694:334813..334906Clytia hemisphaericaexon
TCONS_00017627-exon-sc0000271-1491911889:335074..337415TCONS_00017627-exon-sc0000271-1491911889:335074..337415Clytia hemisphaericaexon
TCONS_00017627-exon-sc0000271-1510915933:335074..337415TCONS_00017627-exon-sc0000271-1510915933:335074..337415Clytia hemisphaericaexon
TCONS_00017627-exon-sc0000271-1575043694:335074..337415TCONS_00017627-exon-sc0000271-1575043694:335074..337415Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000271supercontigsc0000271:332310..337415 +
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
82.6766	83.0578	98.0871	101.28	101.533	74.2287	99.9781	109.222	80.4828	87.7923	79.3169	67.5217	90.7943	94.2492	83.0221	88.6025	88.9684	90.0827	87.6168	91.6054	91.0801	93.9202	62.0884	65.2398	63.2529	69.0616	96.3802	87.7569	76.1576	70.8691
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00017627 vs. Swiss-Prot (Human)
Match: RAB5B (Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 4.791e-104
Identity = 163/204 (79.90%), Postives = 177/204 (86.76%), Query Frame = 1 
Query:  103 RPNGGAPQGKIQPFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCFDDTTVKFEIWDTAGQERYHSLAPMYYRGSQAAIVVYDITNPESFTRAKNWVKELHRQASANIVISLAGNKADLGNKRMVEYDEAQAYAEENGLLFMETSAKTAMNVNDLFLAIAKKLPKNTDSQXXXXXXXXXXXIALNEQTEQQKS 714
            RPNG     KI  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ+VC DDTTVKFEIWDTAGQERYHSLAPMYYRG+QAAIVVYDITN E+F RAK WVKEL RQAS +IVI+LAGNKADL NKRMVEY+EAQAYA++N LLFMETSAKTAMNVNDLFLAIAKKLPK ++ Q  GG      G+ L+EQ++Q KS
Sbjct:    8 RPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPK-SEPQNLGGAAGRSRGVDLHEQSQQNKS 210
The following BLAST results are available for this feature:
BLAST of TCONS_00017627 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB5B4.791e-10479.90Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5... [more]
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