TCONS_00017631 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017631
Unique NameTCONS_00017631
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1884

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017631 ID=TCONS_00017631|Name=TCONS_00017631|organism=Clytia hemisphaerica|type=transcript|length=1884bp
aaatacacgcatttctcctagtttgcaatagtacTCGACTGATAAAGATT
GTAAGTATTGTAATCGGGGAAAGGTCCCTTGACTCCAAGTTCAGAATAGC
GTCTTGTAAAGTAGCTTTCCAAATTTAATCcatgttttggtgtttttata
aAGGGTTTAGGCGGATAAGATAACGTccctcttttattaaaattgaaCAT
TACATAATTACTTTATTTTCTTGATATTTCTAAGAAAATTGTCACATTAT
TACTTATCAattctttttcacaaaagttGATGATTCATTTATCATGAGAC
TGCTGAAGTCATCAAAAACGAGGAATTGATGTTATTGCAAAAAAAGTTGT
TGTGTGTACTATATACTTATTAGAATGTGGTTTATTATATGGCCTCTAAT
GTCGTACGTAAGTGAACTAATACAAAAAACTAACTACTTACCAATAATCC
GGAATATTGTTGAGCATATCATTGGCatgtcaaatttaaaaaccagCCTC
GAGATATCAGGATACATCTAAAACACTGACAACTTTTGATAAGAAGATTG
AATTTGTTAACTACATCACAATCTGTATAATATCTAATTTAAAGACCAGA
ATGGGAGAGTCTGCTTTTCCCTTTCGTTGGTGGGAGTTTGCGTGGTATTT
GATGATCCTTATTTTCGGTATCGTCGGGAATTCTCTGGTCATTCTGGTCG
TTCTTATGAACAAAAAGATCGATGCAAAATCTACGTTTAATATCTTGGTT
ATCGTGCTGGCTATAACAGACTTTCTAGTGTCGGCTGTTGGCTTACCGAT
GTATTATTTATCAACGGACGCGTACAAGCATCCAGACGGCCAACAAGGAG
ATTTTCTTTGTATGTTTTTCACCGGATATTTCCTACCATTTTTTCTATTG
GATGTTTCAGTCTTCATTTTGGTGTTAATCGCGCTCGGACGGAGGAGAGC
AATCACTAATCCGCTCTCCATCTTAGATCATGATTCAACATGGAGAAAGA
TTCTTCCAATCTTCTTTGCGACCGTCTTATCTTTGGGGTTAGGACTGCCA
ACTATATTTGGTCTTAAATACGTCCCTCAAAACCCAATGGTTGGAAATCA
TTGCTCCTACAAATACACTTTCGCGCAATCGATTATCATTTATTGTATCG
TATTTATTGTCGATACAATCTCCCCGATTGCAATATTGATTATCTGTTTT
CGGCATATCAAGAAGTCCTTTCAAATGACAAATATACTATTATCCATGTC
AAACACTACCAGGCTAACTACAAATGACGTCGTCctaaagaaaaagcaaa
aatcaatCGGAACAATGAAACTTGTAGTTCTTGCTTtctttttgtgtatt
ttaccgaaccaCGTGTTATACTTGATGTCGTTGGCAGGCGTGCAAGGACT
CGGCTGGAATACAGAGATCAGTCAGATAGGAGTTTTAATCCGCTTCACAA
ACTCTTGTTTAAATCCTCTCCTGTATTCCTTCAAGAGCGAGAAATTTCGC
AAAAACTTTCGAGATACGTTCCCTTGGTGCTTCAAAAGTCGCCCAAAGAG
GTTAATGTTCAAACAACACGTTAACGCCACGAGACGTGACGGTTACGTTG
CTATTAGAAACGCAGAAACAACGACGACCTCCAATATATTctaaacaatt
tcatttttttatcatcTCAAGCTTATAAACCTTTATTGTTCTTAGTTATT
TACTTATCTTGCGGAAAGAAACATTATTTATGGAATAAAGTGGAAGTAAT
GAAATCGCTATTGTCACCGAACtttgaattctgaaaaatctttaaaaaac
ccAAAATTCTTAATATATTTTGACATTGATTGTAACTTTAATCTAGATCA
TTTTCATCcagaaatgtcatttttttattCAGAC
Run BLAST on NCBI

protein sequence of TCONS_00017631-protein

>TCONS_00017631-protein ID=TCONS_00017631-protein|Name=TCONS_00017631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=347bp
MGESAFPFRWWEFAWYLMILIFGIVGNSLVILVVLMNKKIDAKSTFNILV
IVLAITDFLVSAVGLPMYYLSTDAYKHPDGQQGDFLCMFFTGYFLPFFLL
DVSVFILVLIALGRRRAITNPLSILDHDSTWRKILPIFFATVLSLGLGLP
TIFGLKYVPQNPMVGNHCSYKYTFAQSIIIYCIVFIVDTISPIAILIICF
RHIKKSFQMTNILLSMSNTTRLTTNDVVLKKKQKSIGTMKLVVLAFFLCI
LPNHVLYLMSLAGVQGLGWNTEISQIGVLIRFTNSCLNPLLYSFKSEKFR
KNFRDTFPWCFKSRPKRLMFKQHVNATRRDGYVAIRNAETTTTSNIF
Run BLAST on NCBI

transcript from alignment at sc0000271:125946..128099-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017631 ID=TCONS_00017631|Name=TCONS_00017631|organism=Clytia hemisphaerica|type=transcript|length=2154bp|location=Sequence derived from alignment at sc0000271:125946..128099- (Clytia hemisphaerica)
AAATACACGCATTTCTCCTAGTTTGCAATAGTACTCGACTGATAAAGATT
GTAAGTATTGTAATCGGGGAAAGGTCCCTTGACTCCAAGTTCAGAATAGC
GTCTTGTAAAGTAGCTTTCCAAATTTAATCCATGTTTTGGTGTTTTTATA
AAGGGTTTAGGCGGATAAGATAACGTCCCTCTTTTATTAAAATTGAACAT
TACATAATTACTTTATTTTCTTGATATTTCTAAGAAAATTGTCACATTAT
TACTTATCAATTCTTTTTCACAAAAGTTGATGATTCATTTATCATGAGAC
TGCTGAAGTCATCAAAAACGAGGAATTGATGTTATTGCAAAAAAAGTTGT
TGTGTGTACTATATACTTATTAGAATGTGGTTTATTATATGGCCTCTAAT
GTCGTACGTAAGGTATGTATTACTTTGAGACGAGGAAGTTTCTCTTAAAA
AGTTTAATTTAATTTTGTCGTCTTTTTATAAAAAAGCAAGGTGCGTTGTT
GTTATGATTCAGTTTCGTGATAAGGGATTTCCCTCAACATCGTATTTACT
TTCAGTAATAGATAATGTTTCTCTCGTATCATTTTAATGGTATCATTTAG
TTGAACTTATTACACAATCTTTCGTAGTATAATCTCTTTGAATTAACCTT
TTAATTACATTTCTCCTTATCATCTTTTTTAGTGAACTAATACAAAAAAC
TAACTACTTACCAATAATCCGGAATATTGTTGAGCATATCATTGGCATGT
CAAATTTAAAAACCAGCCTCGAGATATCAGGATACATCTAAAACACTGAC
AACTTTTGATAAGAAGATTGAATTTGTTAACTACATCACAATCTGTATAA
TATCTAATTTAAAGACCAGAATGGGAGAGTCTGCTTTTCCCTTTCGTTGG
TGGGAGTTTGCGTGGTATTTGATGATCCTTATTTTCGGTATCGTCGGGAA
TTCTCTGGTCATTCTGGTCGTTCTTATGAACAAAAAGATCGATGCAAAAT
CTACGTTTAATATCTTGGTTATCGTGCTGGCTATAACAGACTTTCTAGTG
TCGGCTGTTGGCTTACCGATGTATTATTTATCAACGGACGCGTACAAGCA
TCCAGACGGCCAACAAGGAGATTTTCTTTGTATGTTTTTCACCGGATATT
TCCTACCATTTTTTCTATTGGATGTTTCAGTCTTCATTTTGGTGTTAATC
GCGCTCGGACGGAGGAGAGCAATCACTAATCCGCTCTCCATCTTAGATCA
TGATTCAACATGGAGAAAGATTCTTCCAATCTTCTTTGCGACCGTCTTAT
CTTTGGGGTTAGGACTGCCAACTATATTTGGTCTTAAATACGTCCCTCAA
AACCCAATGGTTGGAAATCATTGCTCCTACAAATACACTTTCGCGCAATC
GATTATCATTTATTGTATCGTATTTATTGTCGATACAATCTCCCCGATTG
CAATATTGATTATCTGTTTTCGGCATATCAAGAAGTCCTTTCAAATGACA
AATATACTATTATCCATGTCAAACACTACCAGGCTAACTACAAATGACGT
CGTCCTAAAGAAAAAGCAAAAATCAATCGGAACAATGAAACTTGTAGTTC
TTGCTTTCTTTTTGTGTATTTTACCGAACCACGTGTTATACTTGATGTCG
TTGGCAGGCGTGCAAGGACTCGGCTGGAATACAGAGATCAGTCAGATAGG
AGTTTTAATCCGCTTCACAAACTCTTGTTTAAATCCTCTCCTGTATTCCT
TCAAGAGCGAGAAATTTCGCAAAAACTTTCGAGATACGTTCCCTTGGTGC
TTCAAAAGTCGCCCAAAGAGGTTAATGTTCAAACAACACGTTAACGCCAC
GAGACGTGACGGTTACGTTGCTATTAGAAACGCAGAAACAACGACGACCT
CCAATATATTCTAAACAATTTCATTTTTTTATCATCTCAAGCTTATAAAC
CTTTATTGTTCTTAGTTATTTACTTATCTTGCGGAAAGAAACATTATTTA
TGGAATAAAGTGGAAGTAATGAAATCGCTATTGTCACCGAACTTTGAATT
CTGAAAAATCTTTAAAAAACCCAAAATTCTTAATATATTTTGACATTGAT
TGTAACTTTAATCTAGATCATTTTCATCCAGAAATGTCATTTTTTTATTC
AGAC

Coding sequence (CDS) from alignment at sc0000271:125946..128099-

>TCONS_00017631 ID=TCONS_00017631|Name=TCONS_00017631|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at sc0000271:125946..128099- (Clytia hemisphaerica)
ATGGGAGAGTCTGCTTTTCCCTTTCGTTGGTGGGAGTTTGCGTGGTATTT
GATGATCCTTATTTTCGGTATCGTCGGGAATTCTCTGGTCATTCTGGTCG
TTCTTATGAACAAAAAGATCGATGCAAAATCTACGTTTAATATCTTGGTT
ATCGTGCTGGCTATAACAGACTTTCTAGTGTCGGCTGTTGGCTTACCGAT
GTATTATTTATCAACGGACGCGTACAAGCATCCAGACGGCCAACAAGGAG
ATTTTCTTTGTATGTTTTTCACCGGATATTTCCTACCATTTTTTCTATTG
GATGTTTCAGTCTTCATTTTGGTGTTAATCGCGCTCGGACGGAGGAGAGC
AATCACTAATCCGCTCTCCATCTTAGATCATGATTCAACATGGAGAAAGA
TTCTTCCAATCTTCTTTGCGACCGTCTTATCTTTGGGGTTAGGACTGCCA
ACTATATTTGGTCTTAAATACGTCCCTCAAAACCCAATGGTTGGAAATCA
TTGCTCCTACAAATACACTTTCGCGCAATCGATTATCATTTATTGTATCG
TATTTATTGTCGATACAATCTCCCCGATTGCAATATTGATTATCTGTTTT
CGGCATATCAAGAAGTCCTTTCAAATGACAAATATACTATTATCCATGTC
AAACACTACCAGGCTAACTACAAATGACGTCGTCCTAAAGAAAAAGCAAA
AATCAATCGGAACAATGAAACTTGTAGTTCTTGCTTTCTTTTTGTGTATT
TTACCGAACCACGTGTTATACTTGATGTCGTTGGCAGGCGTGCAAGGACT
CGGCTGGAATACAGAGATCAGTCAGATAGGAGTTTTAATCCGCTTCACAA
ACTCTTGTTTAAATCCTCTCCTGTATTCCTTCAAGAGCGAGAAATTTCGC
AAAAACTTTCGAGATACGTTCCCTTGGTGCTTCAAAAGTCGCCCAAAGAG
GTTAATGTTCAAACAACACGTTAACGCCACGAGACGTGACGGTTACGTTG
CTATTAGAAACGCAGAAACAACGACGACCTCCAATATATTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009851XLOC_009851Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017631-proteinTCONS_00017631-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017631-exon-sc0000271-1575043694:127688..128099TCONS_00017631-exon-sc0000271-1575043694:127688..128099Clytia hemisphaericaexon
TCONS_00017631-exon-sc0000271-1575043694:125946..127417TCONS_00017631-exon-sc0000271-1575043694:125946..127417Clytia hemisphaericaexon
TCONS_00017631-exon-sc0000271-1510915933:127688..128099TCONS_00017631-exon-sc0000271-1510915933:127688..128099Clytia hemisphaericaexon
TCONS_00017631-exon-sc0000271-1510915933:125946..127417TCONS_00017631-exon-sc0000271-1510915933:125946..127417Clytia hemisphaericaexon
TCONS_00017631-exon-sc0000271-1491911889:127688..128099TCONS_00017631-exon-sc0000271-1491911889:127688..128099Clytia hemisphaericaexon
TCONS_00017631-exon-sc0000271-1491911889:125946..127417TCONS_00017631-exon-sc0000271-1491911889:125946..127417Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000271supercontigsc0000271:125946..128099 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.47364	3.8006	0.986083	1.10274	33.2651	23.4132	10.7646	11.2426	7.03837	15.9825	13.8185	4.29695	4.69938	2.06612	1.50339	4.70204	1.02858	2.72015	2.7155	6.50923	1.54193	1.81338	5.96097	4.88257	4.49371	7.52596	47.9651	40.5707	22.7529	13.6227
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017631 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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