TCONS_00017642 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00017642
Unique Name	TCONS_00017642
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1305

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000271:365369..372093-

transcript sequence

>TCONS_00017642 ID=TCONS_00017642|Name=TCONS_00017642|organism=Clytia hemisphaerica|type=transcript|length=1305bp
CTTTAGGTATCAAAGAATCAGACACTGGCCTTGCACCACCTGCAATGTGG
GATTTGGCGGCTGATAAACAAACACTTCATTCAGAGCAACCACTACAaGT
TGCTCGTTGTACAAAAATTATAAATGCTGACTCGGACGATCCAAAATACA
TCATCAATGTCAAACAGTTTGCCAAATTTGTGGTGGACCTTGGTGATCAA
GTGGCACCAACAGATATAGAGGAAGGAATGAGGGTCGGGGTGGAccgtaa
taaatatcaaattcataTTCCATTACCACCTAAAATTGACCCTACAGTTA
CTATGATGCAGGTCGAAGAAAAACCAGATGTGACGTACGCTGACGTTGGT
GGATGTAAAGAACAAATCGATAAATTACGTGAAGTCGTTGAAACACCATT
ATTGCATCCTGAACGTTTTGTGAACCTGGGTATCGATCCCCCTAAAGGTG
TTCTGTGTTACGGCCCTCCCGGTACCGGTAAAACGTTATGTGCAAGAGCT
GTTGCCAACAGGACAGATGCTTGCTTTATCAGAGTTATTGGTTCAGAATT
GGTTCAAAAATATGTCGGAGAGGGTGCTCGAATGGTGCGTGAATTGTTCG
AGATGGCACGAAGTAAAAAAGCTTGCATTATATTCTTTGATGAAATCGAT
GCTGTGGGAGGTGCTCGTTTTGACGATGGTGCTGGAGGAGACAATGAAGT
GCAGAGAACTATGTTAGAATTGATCAATCAATTGGATGGTTTTGATCCAA
GAGGAAACATCAAAGTGCTCATGGCCACAAACAGACCAGACACATTGGAT
CCCGCTTTAACGCGTCCTGGACGTCTAGATAGAAAAGTCGAATTCTCTCT
ACCCGACTTAGAGGGTCGTGCACACATTTTCAAAATCCACGCACGTTCGA
TGAGTGTTGACCGTGATATTCGATACGAATTATTGGCTCGTCTATGTCCT
AACAGTACAGGTGCTGAGATTCGAAGTGTTTGTACAGAGGCTGGTATGTT
CGCTATCCGTGAACGAAGGAAGgTTGCAACGGAGAAGGATTTCTTAAGCG
CTATCCAAAAGGTCATCAAGGCGTACGCTAAGTTCAGTGCCACACCCAAA
TACATGACGTATAATTAGATAGTGTTTAAATTGAAACAAGTATTTGCTTA
TACTTTATAAAAGGTAgtgtttttatttctatttttaaccATTGTCTTTT
atttattgtaaaattttttagttcaatctacTCATTAACCTTtgttaaaa
atagaaatatacgatgcaatttttcaataaattactATTTATATTCTTCT
CTTAC

Run BLAST on NCBI

transcript from alignment at sc0000271:365369..372093-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00017642 ID=TCONS_00017642|Name=TCONS_00017642|organism=Clytia hemisphaerica|type=transcript|length=6725bp|location=Sequence derived from alignment at sc0000271:365369..372093- (Clytia hemisphaerica)
CTTTAGGTATCAAAGAATCAGACACTGGCCTTGCACCACCTGCAATGTGG
GATTTGGCGGCTGATAAACAAACACTTCATTCAGAGCAACCACTACAAGT
AATTTTTCATTCTTTCATTTAATGTGTCTGTACAATAGGTTGTTTACAGA
ATTTGATACTCAGATGATAGCTTTGTTGTGTTATCTTTTTGAATATAATG
GAATATATGTAAAAAACTTTCATATAATTAAGAATTTTAAAGCGTATATA
TCCTGCGACAAGAAAATAACAAAACGCCTTTACTCAGCTTTACTTTTAGT
TAGTTCATGATCTAGCTTGTATTTTTCTATGATGTTATAGGTTGCTCGTT
GTACAAAAATTATAAATGCTGACTCGGACGATCCAAAATACATCATCAAT
GTCAAACAGTTTGCCAAATTTGTGGTGGACCTTNTGTATTTTTCTATGCT
GTTATAGGTTGCTCGTTGTACAAAAATTATAAATGCTGACTCGGACGATC
CAAAATACATCATCAATGTCAAACAGTTTGCCAAATTTGTGGTGGACCTT
GGTGATCAAGTGGCACCAACAGATATAGAGGAAGGAATGAGGGTCGGGGT
GGACCGTAATAAATATCAAATTCATATTCCATTACCACCTAAAATTGACC
CTACAGTTACTATGATGCAGGTACAGAGAGAGTCGATTAGTATAATATCT
TTTATCCTCCCTGCAAGTATTTATATCAAAGATAAGTGCAAAGACTCGCC
GAATGTTCTTGTCCTGGTCTAATTAGTTGTTCAACATGTCATCATCTAGA
GGAAAATTTCTATTCTCATGTGGTTTAAAAGTAATGGAATTAGCTCATGC
AATTTGATACAACTGCAATGAAAATATTTGAAAATGAAAATGGAATAAGG
CAGACTCCCTGTAAATAGTTTTATCGGCGATCCAAAAAATATCTGCAATC
TGATTGGTTAAAAAGAGTACAAATATATCTTGTATTTTACATGTAAAAAT
ATAAATTGACGAAAAGATGTTGTTGCATTGTAGCGGTAGAAGCAATCTAA
CGTCACTTTGCTAAAAAAGTGTCCTCCAACACAAAAAGTGCATTTTTGGG
TCACCGATAAACCAGTTATCAGATAACTATTACATATCAAAAATAAGTCC
AAGGACTCGCTGAATGTTTTTCACTTAATGATACTGACCTTCATGGTTTA
ATAAAGTTAGTGACTTGGTTACAGTAAACATATTCACTATTAAGGTCGAA
GAAAAACCAGATGTGACGTACGCTGACGTTGGTGGATGTAAAGAACAAAT
CGATAAATTACGTGAAGTCGTTGAAACACCATTATTGCATGTAAGTGTCT
CTCTGTCATGAACCTGTGAAAATGAATTTATCGATTAAATGTACTGAAAA
AAAGTCCATCGTTGTAGTCTTCTTGATTCAGAATAATGGAGATAATTAGA
GTCTATAGAAATAGCTCAATATCCTCTAAAATTTGGTTTTATTTCTTTAC
TTTATACTCTTTCCTTTCAGCCTGAACGTTTTGTGAACCTGGGTATCGAT
CCCCCTAAAGGTGTTCTGTGTTACGGCCCTCCCGGTACCGGTAAAACGTT
ATGTGCAAGAGCTGTTGCCAACAGGACAGATGCTTGCTTTATCAGAGTTA
TTGGTTCAGAATTGGTTCAAAAATATGTCGGAGAGGTATAGAATACACAA
TATTCATTAATCTGCTTGCTTCAGTTTATTATGCAGTGCTTTTAGCAGTA
TGAAATGCTGGTCTGCCACAACACCTTCCCATTTAAAACGGACACTTTTG
AATTTTGTTATGCAAAAGATGTTTTTCTTCTTTTTTTGATGGGAGAAATT
CATAGTGGGCGTTGAAAGTTTATGGGAATTACTAATGTAAATTACCATCC
ATTTTTTGCCTATTTTTATGTGGAAGATTTATCTTGTGTACTTAAACGAT
CATTAATAAAGTCATAATAACTTGAATTGACTCCTGCTTCTTTACAGGGT
GCTCGAATGGTGCGTGAATTGTTCGAGATGGCACGAAGTAAAAAAGCTTG
CATTATATTCTTTGATGAAATCGATGCTGTGGGAGGTAAGATTCTACAAT
GAAAAATAGTACTAATTCACACATATTTCCTAATTAGTTATACATTCAAT
GGTCATTATGCATGCGTTAGCATGTTTAGCAAACTTAGGTAAAACTGTCA
ACAGTTTTAGCTATTTTGGTACGAAATCAGTATTTGCTTGTAGCAGTTGA
CAGTTTTAGTTATTTTGAAACGAATTCAGGTTTGTAGGCTTATATACAAA
ACATTTAGTTTAGCTTGACGTTTCTTTTTTCTCTGTACTAGGTGCTCGTT
TTGACGATGGTGCTGGAGGAGACAATGAAGTGCAGAGAACTATGTTAGAA
TTGATCAATCAATTGGATGGTTTTGATCCAAGAGGAAACATCAAAGTGCT
CATGGCCACAAACAGGTAAAACAATATGTAATAGTTATCGGACAGTTGCG
AGTACAATATGAAAAATATTTTACGAGTTCCGAGATTTTTCCGTACAATA
TTTTCCGAGCCTTTAGGCGAGGAAAATATACGGAAAATACGGAACGAGTA
AAATATTTCCATATTGTACGAGCTAATGTCTGATAACTGGTTTATCGGTG
ACCCAAAAAATGCACTTTTTGTGTTGGAATAAAGCGCAGGGCACTTTTGT
AGCAAAGTGACGTTAGATTGCTGCTACCACTACAATGCAACAACATCTTT
TCGTCAATTTATATTTTTACATGTAAAATACAAGATATATTGTACTCTTT
TTAACCAATCAGATTGCAGATATTTTTTGGATCGCCGATAACCACTATTA
ATGTATCCAAGCCCAGTCATCCTCTAGACATTGTTATATTGCTGTACCGG
AGACATTGTCGTTTACATGATTGCTCTTGCAAGTTACTAGGCTGTCAGCA
TTTTCGGATTAGTTTTGTTTGTAAAGGGCTGCGAATCAACCTCAAAAGTC
TTGTCCGCTTAGTAATTTTTTCTTAAATAAGTTTTTTGAGCTGGGAATCG
TTACTTACTTAGCAAGCGGGAGCGTTTTTTGGAGTTGGATTCGCATCCTT
TGTAACAAAACAAATTAAAGAGATGCTCTAAACCCAGCATGTTACCTGTT
GAGTCGTTTTCAGAAACATTTGTTTTCAATATATCTATTCTTGTGTTTTA
AAGAGTAAAAGAAATTAGTGAAAAAAGCATGTCCCTACCTGGAACATAGA
CTCGACACAAATTTCCCGACAATTGTTGTTGCCCTTAGTAACGATATCAA
CTACAAAAAGTGCTGATCTAAGCATTTTACTCAAATACACGGGCCGTCTT
AAAAGAGAAAATACTAAAATTTCAATATTGGCTGTCATTGTATAATACAG
AATGCTTTGACCGCCATTTATGAGCTTTTTGTTCTGTCATGAATTTTATA
TAAAGTACTTTATTCATGATTATACAATGATTATGAAACACGTTGAATAG
ACTTGGATATAATTTTTATAAATTTTAAAAGCTACTTTAAGAATTCCATA
AAGAAATGCTATGGTATAATGATTGTTCCCCATAAAATGAGCTATTGTTT
AAAAAAAAATTTCCACTTTTTAATACAGACATATTATCAGATTTATCTTT
TTTCTTTTCTTTTGGAAAAAAATACCTTCTGATCTTAATCTCACGCGCCC
TTAATGTACTTTATGCACGTGACCATTGAAACACCATCAGAAGAAGTGCA
TTCCACTTCCAAATAAGGAAATACCAGTGAAATGCATACTCCATCGGTGA
TGTTCAAATGACTTTTTATCTGACCTGACGATCTAAAGATCCAATAAAGA
TACAATCTTTTTGCAACCCCACTAATAGCTTAATAGCCTCTTTCTCACCC
AATATTAGGTTTGATAAATTTAGAAACCTTTCTCCCATAAGCTGTTTATA
CGTGTTTTAACCCATTGTTCAACTATTGTTTTTTGTTATTTCAGACCAGA
CACATTGGATCCCGCTTTAACGCGTCCTGGACGTCTAGATAGAAAAGTCG
AATTCTCTCTACCCGACTTAGAGGTCAGCAAAAGTAATTTATTCTCCGTC
CACGCACACACGTTTTCCAACATTTTCTGAAATTAACTTTTTTATTCGTT
TGAGGATTACGTTTGATCAAATGAACCAATTTTGATAAATGACGCATCAA
AATTTTAGTTTATCTTTTTCTTTTGCAATGGACCTCTTCCACTTTACTCG
AGTCCCTCTAGAGTCGTCTCCTTTGAGTCTTGCCTATCAATTTACGGAGG
GGTAAAATAATTCGTTATCATATAATTCGAACAAAGTGTTTCGTCTCCTT
CGAACCCCCTTTGATTCAAAGTATCATGTAATTCAAAGAGACTTACTCGT
CCTCTGGACAGTCGAACGAAATGAGTTTTAAAACACTATCACTACGGAAG
CATTTCGAGTCCGAGGTGTTGCGAGCTAGTCGTGGCATGACTTTAAGCTC
ATTTTCGAGGATTTTTGGACTATTGAAACTAAGGCTGCTGGACCTACATA
TCCATTATCTCATGCCAAACTGAAGAGTTATCATCCTATGTTATTCTGTT
TTTAGGGTCGTGCACACATTTTCAAAATCCACGCACGTTCGATGAGTGTT
GACCGTGATATTCGATACGAATTATTGGCTCGTCTATGTCCTAACAGTAC
AGGTAAAAACTCTTAACCATTATTAGTTTCGACCCCAGGTCCCGTCAAAT
TCATATATCTCTCTGAAGATTTTTCCTCTTAATTGTCCAAAAACTACCAA
CCTTGGCAGAGTGGAGATTATTGTAAATTGATTGTTTTTAATTAAAGCTG
AGATTGCAATTGACCTAAGTCACTGTTTTGTTTATTAACGAAAAATTAGC
AAATGTAAACTCGGACCTAGCCCTTNGTCACTGTTTTGTTTATTAGCGAA
AAATTAGCAAATGTAAACTCGGACCTAGCCCTTTTTGTCGTACAGGTTGG
ATTTTATCGCTGTATAACAGCTCTTTCACGAACCCTTGGTTTCTAAGCCT
CATTTTTAAAAGACCTCTTTTCGTAAGCTGGCATTCACCATTTTACTAAA
CAACTTCTAAATGATTCTTCTTTGTGCTGACAGGTGCTGAGATTCGAAGT
GTTTGTACAGAGGCTGGTATGTTCGCTATCCGTGAACGAAGGAAGGTATG
TGAAGTTTATATCTCGCCAGTTTCATCTATATTATGCACAAGAATGTTTC
CTACATGTCTCTCTTATGTTAGTCATAAGAACTGTGTTGTTAGAGTTTTA
AATACCAGCTATACCTAACCAAGATGTTTAGTATTAAGATTTTAAAGAAC
GGCATGTGTGTTTCTAAGGCAGGAAACAAGGTATTAGTGATTTTCAAAAG
TTTGGCAAAGTAGCAAATAAGGTCAGTAAGACAGAATGCTGGTTTTCAAT
TCCTAAATGATGAGGCATATGTATTATTAAAAGTTATTATGTCTTGCTGA
GCTTTAATGCTTAAAATTCTTAACATTTTATTTGAACTTTTAATCTCTGC
ATTTTATTTTATTCAAACTAAAATGGTATCTTCACGTTGTTCTATAGAGA
TTATCGTTTAATACCTTTTTATACTGTCAGAAAGAAAAAGCATGAACCCT
TTTGCTGTTAGAAAACTCGCAGTATTAAAAACAGCTATCAGCTTTTCTAA
ATACATGCATCACTTTGTTAGAAAAAATTTGATTATATAACGACATTTTC
CTGTGACATCAATCCATAGATATTTGACTACCTTTCGCATACCCTGTCAG
TATAATACTAAGGATTGGATGAACGAAAGAAATACCCTGTTAAATTACCA
AAAGCCTCTCCCTCGGCAATTTTACAACTCATACCTAGTTTTGCTTATTT
GTACCATCTATCTTAACGCCATGTATGCCGGTATTTCGACCTGAGGACTG
TAACCCGTTAATAACGAACCTAGTCTATAACCCATGAAATAATCTGCGAA
GATTGTAGGCGCAAAAGTCACTAAGCACTAATATAGACCCGAAGCAATGC
AGTTAGACGAAAAAGGGTGGATAAGCAAGTATATAAGCTTAACAGATAAT
CACCACACGAGTTTTACTTGAGTGTGCACTTTCAATAGAAGAGGGATTAA
TTTTCATGGCAGTTAGATAGGTATGTATGAAAGACATTTATCAGTAAGAG
CCAGTCTCTTCCCATTATTGAAAACGTGTTCCGTTTGTGATTATTATATT
GAAAATACGACTTCATCAAAATTGTGAAATGATAGACGTACATACTAGTA
GTGGTGCAATTCTTTTTAATAAATTTTCATGTCTAGCTGTTCTGCTTTAA
TTTGCTGCATAAGCAATTTCTGTGTTAGCCAATGAGCATGAAGTTGGATT
TTAGCTGACCTTGCATTTTCTTTCCTTTTCATTTCTTTTTAGGTTGCAAC
GGAGAAGGATTTCTTAAGCGCTATCCAAAAGGTCATCAAGGCGTACGCTA
AGTTCAGTGCCACACCCAAATACATGACGTATAATTAGATAGTGTTTAAA
TTGAAACAAGTATTTGCTTATACTTTATAAAAGGTAGTGTTTTTATTTCT
ATTTTTAACCATTGTCTTTTATTTATTGTAAAATTTTTTAGTTCAATCTA
CTCATTAACCTTTGTTAAAAATAGAAATATACGATGCAATTTTTCAATAA
ATTACTATTTATATTCTTCTCTTAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009860	XLOC_009860	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000271	supercontig	sc0000271:365369..372093 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
125.111	122.823	108.176	115.013	96.4514	75.0961	110.077	122.942	90.8213	106.939	109.536	73.029	71.5389	76.1048	82.9437	93.0649	96.5933	91.1593	55.7446	52.8235	77.6957	74.2602	73.729	69.4936	116.219	110.779	70.0189	73.8734	53.713	50.7899

Blast

[Close]

BLAST of TCONS_00017642 vs. Swiss-Prot (Human)
Match: PRS7 (26S proteasome regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3)

HSP 1 Score: 692.575 bits (1786), Expect = 0.000e+0
Identity = 346/370 (93.51%), Postives = 362/370 (97.84%), Query Frame = 3

Query:    6 GIKESDTGLAPPAMWDLAADKQTLHSEQPLQVARCTKIINADSDDPKYIINVKQFAKFVVDLGDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYADVGGCKEQIDKLREVVETPLLHPERFVNLGIDPPKGVLCYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARSKKACIIFFDEIXXXXXXXXXXXXXXXNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALTRPGRLDRKVEFSLPDLEGRAHIFKIHARSMSVDRDIRYELLARLCPNSTGAEIRSVCTEAGMFAIRERRKVATEKDFLSAIQKVIKAYAKFSATPKYMTYN 1115
            GIKESDTGLAPPA+WDLAADKQTL SEQPLQVARCTKIINADS+DPKYIINVKQFAKFVVDL DQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTY+DVGGCKEQI+KLREVVETPLLHPERFVNLGI+PPKGVL +GPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMAR+KKAC+IFFDEIDA+GGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPAL RPGRLDRK+EFSLPDLEGR HIFKIHARSMSV+RDIR+ELLARLCPNSTGAEIRSVCTEAGMFAIR RRK+ATEKDFL A+ KVIK+YAKFSATP+YMTYN
Sbjct:   64 GIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIKSYAKFSATPRYMTYN 433

The following BLAST results are available for this feature:

BLAST of TCONS_00017642 vs. Swiss-Prot (Human)

BLAST of TCONS_00017642 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PRS7	0.000e+0	93.51	26S proteasome regulatory subunit 7 OS=Homo sapien...	[more]

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TCONS_00017642 (transcript) - C. hemisphaerica