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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017659 ID=TCONS_00017659|Name=TCONS_00017659|organism=Clytia hemisphaerica|type=transcript|length=801bp
GATTCGAATGTTaaattcgaaaatatttttgtttccttggtgTGTCATCA
TCCTACGTACACTACATCTAAGGCTCCAATCACATTTCAGTAATGGAATG
TCCCgtgattcgaatgtttacattttttaaagacattcaatttggaatat
ttttctgttCTGCTTCTATATGGAATAGTTTCATTCAAATGCTATCAGTT
TGAGGAGAAAACGATTTTAGAAAAGTGTATTGTAGGGATTTTTATTCCAG
ATATATTGTTTATTGCAGTTTATCATTCTCCCGAAAAATGTCATATCAGG
CACATAACTGTATAGGTCGGTATGtataaaagaaagaattttgGCGGTAA
ACTGCTCACTCTGAATCGCTTATTGAGTGTTTCGTTGGTTACTACTacaa
ctttgtaattttttaatcgaattttttaaaaatcaaaaatcatgaGTGAT
CAAGTGCTTTGTTATAAGTTTCAAGGCGAAAACAACTACAAGATTGGGCA
TCCTATTATCAAGGGGCTGTCGTCGGCGATATGATAAAGGTGACTTGGAA
GAGGAAGGAGGTGGAGGTGGAAGTGGTGGCATTTGGCATACCGTACAGGA
GATAACAGAATTCATCCAGAACGCAAAAGGGAAAACTAAAGGGAAAAGTC
TCAGTCCATGAAGACACCAGACGATCCCAAAAACGGTATGTTATAAAGCT
AAAATACTGTGAATTAATTGTCTTTGCGATCCTATGTgatgaaataataa
aatgaataacttggcatatgccgacattggcaaataggtggaaccttttt
t Run BLAST on NCBI transcript from alignment at sc0000273:9723..12300+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017659 ID=TCONS_00017659|Name=TCONS_00017659|organism=Clytia hemisphaerica|type=transcript|length=2578bp|location=Sequence derived from alignment at sc0000273:9723..12300+ (Clytia hemisphaerica)
GATTCGAATGTTaaattcgaaaatatttttgtttccttggtgTGTCATCA
TCCTACGTACACTACATCTAAGGCTCCAATCACATTTCAGTAATGGAATG
TCCCgtgattcgaatgtttacattttttaaagacattcaatttggaatat
ttttctgttCTGCTTCTATATGGAATAGTTTCATTCAAATGCTATCAGTT
TGAGGAGAAAACGATTTTAGAAAAGTGTATTGTAGGGATTTTTATTCCAG
ATATATTGTTTATTGCAGTTTATCATTCTCCCGAAAAATGTCATATCAGG
CACATAACTGTATAGGTCGGTATGtataaaagaaagaattttgGCGGTAA
ACTGCTCACTCTGAATCGCTTATTGAGTGTTTCGTTGGTTACTACTacaa
ctttgtaattttttaatcgaattttttaaaaatcaaaaatcatgaGTGAT
CAAGTGCTTTGTTATAAGTTTCAAGGCGAAAACAACTACAAGATTGGGCA
TCCTATTATCAAGGGGCTGTCGTCGGCGATATGATAAAGGTGACTTGGAA
GAGGAAGGAGGTGGAGGTGGAAGTGGTGGCATTTGGCATACCGTACAGGA
GATAACAGGTATTTTGTAATATATTGTGACTAGAGTATCAGGTCTTGTTT
TTGAGAGCTCTGTTAAGATTTATATATTGTGAATGAAGTTTCTTAAAATC
CAGACATCAGGCTTTGTATAAAACAAATAAAGGCCACTGTGTCGAAGGCT
GAAGCATAATACTTGATTCGCAAAATTAAGACAAAGAAGATTTCTTCTCC
GTTTTTTTGCCTAGTGTTAAGTAGAAATATGTTATGGGTTTCATCAGTtc
agaattttcttttttaactttcgccgataaatatttgtgtttttcattca
aattcaatatgttcgaatttcaaaatgttcgaatttcaaaatgttcgaat
ttcaaaatgttcgaatttcaaaatgttcgaatttcAAGATGTTCGAATTT
GTGAAAGATTCGAAAACTGTTTAGGCTTTATTTACACCGTATCAATAATT
GTAgcgaaaattaaaaagataaaatgaaatgaattttacaataatacacc
tttcccgtaattcaaattttcatgattttcacgaattttggctcttttcg
cgaaaataaatgtctttaaaaattcaggGTGATATAATATCATAAGTAGA
AAGAACATACTTAAATATGAGAGGATGAAATATTTGAGCATTTGAAATAC
AAACTTATTAAAAACACACTTCATATTTTCCATCAACCCCGTAGGAAAGT
ATGCactagggggaaatttgtaaaatcgctcgatttttttagtcaaagca
cttgttatacatttttggaaagctaaggggtaggggaatcaaaatacctt
aaggggattaattttcgcggtaactTATTTTCGCAAGACAATTTTTtcgc
gaaataatttaattttcgcgggacttattttcgcgaagacggatattcta
aattttcgcgaggattaaatttcgcgagtttcGCGAGAAGTGGGCTTTTT
CGAAAgttcaaaactaaaaaatcgAACAGTAGACCAATAAAAAACTTGCT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGATTGATATGTCTT
TAATAGGtataatttttctgaaaacaaagggaaattatgtctaaaaaaac
ttaattttcgcgaggattatattttgcgaatttcgcaaatccaaaggttt
ttaaaattttcgaggggattaatttcgcgaatttcggaaaaactcgcgaa
attcgcgcaaaagcgcaaaaactggacaaaacagctgtatctggctgaaa
aacaatgaaaaacactgtttttaaggattaatatctcgagctaggtaaag
aaatcacctatactcgcaatatatcactaatcttaattttttgagagctt
tccaaaaatatacaacagggctctgttttctcaagctaaaattttcatta
ttttttcaccctatgatttttgcctgagagcgtcgtatttgtccgaaaat
cacaccaaagtgtccaaaaaaaaattggcacccaagttattttgattccc
ctaccccttagctttccaaaaatgtataacaagtgctttgactaaaaaaa
tcgagcaacctcaaaaaaacgaacaaatttccctcTACTATAATCTGTCT
GGTTATTAAAGTCAATCTATCCAATTGTATTTTAGAATTCATCCAGAACG
CAAAAGGGAAAACTAAAGGGAAAAGTCTCAGTCCATGAAGACACCAGACG
ATCCCAAAAACGGTATGTTATAAAGCTAAAATACTGTGAATTAATTGTCT
TTGCGATCCTATGTgatgaaataataaaatgaataacttggcatatgccg
acattggcaaataggtggaacctttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017659-exon-sc0000273-1491911889:9723..10330 | TCONS_00017659-exon-sc0000273-1491911889:9723..10330 | Clytia hemisphaerica | exon |
| TCONS_00017659-exon-sc0000273-1510915933:9723..10330 | TCONS_00017659-exon-sc0000273-1510915933:9723..10330 | Clytia hemisphaerica | exon |
| TCONS_00017659-exon-sc0000273-1575043694:9723..10330 | TCONS_00017659-exon-sc0000273-1575043694:9723..10330 | Clytia hemisphaerica | exon |
| TCONS_00017659-exon-sc0000273-1491911889:12108..12300 | TCONS_00017659-exon-sc0000273-1491911889:12108..12300 | Clytia hemisphaerica | exon |
| TCONS_00017659-exon-sc0000273-1510915933:12108..12300 | TCONS_00017659-exon-sc0000273-1510915933:12108..12300 | Clytia hemisphaerica | exon |
| TCONS_00017659-exon-sc0000273-1575043694:12108..12300 | TCONS_00017659-exon-sc0000273-1575043694:12108..12300 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000273 | supercontig | sc0000273:9723..12300 + |
Blast
The following BLAST results are available for this feature:
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