TCONS_00017662 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017662
Unique NameTCONS_00017662
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length552

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017662 ID=TCONS_00017662|Name=TCONS_00017662|organism=Clytia hemisphaerica|type=transcript|length=552bp
ataactccTTGTATTTAACTTGTATTTATAACTTGTATTTATCAAGAAAA
ATCATTCGTATTTTTAAGGAATATCATTCTTTTATTGTTCAAGGGAAATA
ATTGTCCTTTCCAAGAAAAAcattatattttcaaaagaaaactttattca
tgtattttatatattattttacaaggaaaataaaaaaaactacttgCGAA
TCTATGATGATAGTATCAAGAATTATAGACTAAAAATCAAATGGTCTCTT
TGTGACAGTTGTTTGATTGGTGTTGGTGCTCCCTCGGGAGATAATTAGTT
TTTAATGATAATTTACAAACCAAATCGCCACGTTTTTTGAgaggtttttt
ctcattttacaTTTGAAAGTATTCTCATGAAGTCATGTCTATGAGAGAGA
AGGAGTGATTTTTTATGTCTTGGAATCATCTCATGTCaagtttattttct
tcttgGTGACAACCTTCTGACTTCAAGATTGGTCTCAAGATTGTTTGTGG
ATAAGTCTATGGACAATGTTTTCTTGAATATCTCTATACAGATGAAAATT
CC
Run BLAST on NCBI

transcript from alignment at sc0000273:56087..56842+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017662 ID=TCONS_00017662|Name=TCONS_00017662|organism=Clytia hemisphaerica|type=transcript|length=756bp|location=Sequence derived from alignment at sc0000273:56087..56842+ (Clytia hemisphaerica)
ataactccTTGTATTTAACTTGTATTTATAACTTGTATTTATCAAGAAAA
ATCATTCGTATTTTTAAGGAATATCATTCTTTTATTGTTCAAGGGAAATA
ATTGTCCTTTCCAAGAAAAAcattatattttcaaaagaaaactttattca
tgtattttatatattattttacaaggaaaataaaaaaaactacttgCGAA
TCTATGATGATAGTATCAAGAATTATAGACTAAAAATCAAATGGTCTCTT
TGTGACAGTTGTTTGATTGGTGTTGGTGCTCCCTCGGGAGATAATTAGTT
TTTAATGATAATTTACAAACCAAATCGCCACGTTTTTTGAgaggtttttt
ctcattttacaTTTGAAAGTATTCTCATGAAGTCATGTCTATGAGAGAGA
AGGAGTGATTTTTTATGTCTTGGAATCATCTCATGTCaagtttattttct
tcttgGTGACAACCTTCTGACTTCAAGATTGGTCTCAAGATTGTTTGTGG
ATAAGTCTATGGACAATGTTTTGTAAGAAATTCTTGTATATATTTTCTCT
TCTAAGGTATTTTTGATACATCTCTAAGGACATTTATCCAAGGTTGTACA
TACTTTGTGGACTTGTCTAGTGAAGACTTTCTTGTACATTTTTACACTTC
GACTATCTCGACTAACATAGGCCTATGTATGtaaatttgtaaagtttttc
atgtattttttctATTGCGTTTTTAGCTTGAATATCTCTATACAGATGAA
AATTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009878XLOC_009878Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017662-exon-sc0000273-1491911889:56087..56608TCONS_00017662-exon-sc0000273-1491911889:56087..56608Clytia hemisphaericaexon
TCONS_00017662-exon-sc0000273-1510915933:56087..56608TCONS_00017662-exon-sc0000273-1510915933:56087..56608Clytia hemisphaericaexon
TCONS_00017662-exon-sc0000273-1575043694:56087..56608TCONS_00017662-exon-sc0000273-1575043694:56087..56608Clytia hemisphaericaexon
TCONS_00017662-exon-sc0000273-1491911889:56813..56842TCONS_00017662-exon-sc0000273-1491911889:56813..56842Clytia hemisphaericaexon
TCONS_00017662-exon-sc0000273-1510915933:56813..56842TCONS_00017662-exon-sc0000273-1510915933:56813..56842Clytia hemisphaericaexon
TCONS_00017662-exon-sc0000273-1575043694:56813..56842TCONS_00017662-exon-sc0000273-1575043694:56813..56842Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000273supercontigsc0000273:56087..56842 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.248241	0.504321	0	0	1.56224	2.66741	0.159576	3.66014	2.2662	3.36847	0	2.45235	1.68449	2.32893	1.40959	0.61769	1.16471	0.143255	0.351847	1.74887	1.66009	0.372553	0	4.34031e-09	0.444209	2.12098	0.964431	0.847631	0.390331	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017662 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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