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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017671 ID=TCONS_00017671|Name=TCONS_00017671|organism=Clytia hemisphaerica|type=transcript|length=4010bpRun BLAST on NCBI protein sequence of TCONS_00017671-protein >TCONS_00017671-protein ID=TCONS_00017671-protein|Name=TCONS_00017671-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1110bp YKITGRLDMEHYQGEFIDNVNNSGMVIENESESAVIYKNYDNLEKEFPPERun BLAST on NCBI transcript from alignment at sc0000273:165398..185083+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017671 ID=TCONS_00017671|Name=TCONS_00017671|organism=Clytia hemisphaerica|type=transcript|length=19686bp|location=Sequence derived from alignment at sc0000273:165398..185083+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000273:165398..185083+ >TCONS_00017671 ID=TCONS_00017671|Name=TCONS_00017671|organism=Clytia hemisphaerica|type=CDS|length=36663bp|location=Sequence derived from alignment at sc0000273:165398..185083+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017671 vs. Swiss-Prot (Human)
Match: DISP1 (Protein dispatched homolog 1 OS=Homo sapiens GN=DISP1 PE=1 SV=3) HSP 1 Score: 127.872 bits (320), Expect = 2.165e-29 Identity = 103/406 (25.37%), Postives = 174/406 (42.86%), Query Frame = 3
Query: 2019 KGRTVLDEEFDMNQPGCQQAVLNFCKRLKNLAPEEAEDLRIRRSVATNQLEVECFIEEMDQYFRSDDFNDKMKYHQKHHSLSDTNATFKIPMTKEDIKRLMDTLPKVYNTSLLTNDYKNYFEIALGYWLTSGGNPGYNFDKYSSYMGGNLDLSTGNSGIYTQAQGGRYGNKLRYVAVVANTSLTGTKLKHSEGVRVSNNWETFVTREMKKMPKGCNKGFQCTPEWF--NWHWLKVQEELLQGAKQGIIIGLCVAFPVLVITTLNWVVGVFAIVTIALITISVIGLIPMLGWKLGVLESLNLTLVVGLSVDYVVHLADGYVRCTKFSRAGRTRYMLGHVGVSVLAGAATTLGASSFMLGSKILFFYQFGIFIFCTIGFSIVYALLVFTVLIGFCGPQGNSGGLTFLK 3230
KG+ LD F++ P Q +L+FC++L+N D Q CFIE Q+ + D ++ Y S + +K + + IKR + L E + GY L S PG FD + +R V + ++ T L + + + +++++ E+ P+G + G WF N + +Q+ L G + + + VAF V+++TT N ++ ++AI++IA +G + +LGW+L VLES+ +++ VGLSVD+ VH Y R G+ + L VG ++ A TT A + M+ S +L + Q G F+ + S +A F + GPQG G + K
Sbjct: 807 KGKLTLDSSFNIASPASQAWILHFCQKLRNQTFFYQTD---------EQDFTSCFIETFKQWMENQDCDEPALYP----CCSHWSFPYKQEIFELCIKRAIMEL-----------------ERSTGYHLDSK-TPGPRFD---------------------------INDTIRAVVLEFQSTYLFT-LAYEKMHQFYKEVDSWISSELSSAPEGLSNG------WFVSNLEFYDLQDSLSDGTLIAMGLSVAVAFSVMLLTTWNIIISLYAIISIAGTIFVTVGSLVLLGWELNVLESVTISVAVGLSVDFAVHYGVAYRLAPDPDREGKVIFSLSRVGSAMAMAALTTFVAGAMMMPSTVLAYTQLGTFMMLIMCISWAFATFFFQCMCRCLGPQGTCGQIPLPK 1147 The following BLAST results are available for this feature:
BLAST of TCONS_00017671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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