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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017675 ID=TCONS_00017675|Name=TCONS_00017675|organism=Clytia hemisphaerica|type=transcript|length=815bp
ttttcaggacCTAAAAATCTCAACATAAAGATTTCATATATACTTGGTTT
AGAATAACCAAAcctttgctgatgtcagccatTATGTTCCATAATGGAGT
CTTTACTGTCATGTGATACTGGAGAAACATTCAAAGTGGTTCATGGTGAA
ACCTTGATTGGGCGTGGtccatttttaaagGTTACAGACAGCAAAGTATC
ACGAAAACATGCAATATTGAAGTACGCAGAAGATGGAGAGATCTCCCTCA
AACCGattcacaAAAATCCAACCTTCCTTTACATCGAATCTACTGACAAT
TGGCAACCATTACAAAAGGATATTTGGCATACTTTACAACATGGATCGAA
GATTTCACTCTTACCCAACTCCCTGAAGTTTGAAGTTGTATCGAAAAAAC
AAAGCACAGTCGAAAGCTTAAAAGAAAATGGATCagAGAAGAAAAAGTCG
GAAAATGCTGCTACcgctaaagaaaataaagcaaaGGAAGACTCGCAACC
CGTTGAAATCAAACTGTCATCAACAGCGTCTGGGAAATCTCTATTGAGAA
CGAAACCACTTCCATCAAAGAAGAATGCGAAACGCCAGTTACCTTCTTGG
ATGTTAAATGTTTCTACGGGAGGagatgcaaagaaaaaaacagGTATCAA
AAGAGAGCTGAAATCCAAGAAAGCCAACATTTCAACTGAACAAAATGACA
TGTCAAAAACTATTGGAGGAGAGAGCTCAAAAGGTCGAAAAACAAGTCAC
GGTTTAAAGTCGCCTGATTTATCGGACGACGAAGTTCTCCCTGAGAAGAA
GACTTTGGCCAATCA Run BLAST on NCBI transcript from alignment at sc0000273:223055..241628+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017675 ID=TCONS_00017675|Name=TCONS_00017675|organism=Clytia hemisphaerica|type=transcript|length=18574bp|location=Sequence derived from alignment at sc0000273:223055..241628+ (Clytia hemisphaerica)
ttttcaggacCTAAAAATCTCAACATAAAGATTTCATATATACTTGGTTT
AGAATAACCAAAcctttgctgatgtcagccatTATGTTCCATAATGGAGT
CTTTACTGTCATGTGATACTGGAGAAACATTCAAAGTGGTTCATGGTGAA
ACCTTGATTGGGCGTGGtccatttttaaaggtttgaacATTTTggtttaa
agtctgtctcaaaagatTGTGAACACTTTagtttttaagtattttctcaG
CACCCATTTATGCTATTTTAGAAaattatacaccgttggaaagatatttg
caATGGAGAAAAATCTGGaggataaaatatttttgaaaaaatgaaaactg
aggaagaaaatgaagattttttctattgttttaaaaatcatgacATCAGG
CTATTTAGAACATTTAAACCTTACCAATTTCAAGGCGCCAATTTCAAGGC
TGTGTCCAGATTTTTCGCATCTTTCctaaataaaaagttacagcacTATG
AAGTTGGTCATTTTTTGCCGTTTTAGGCCTACTtcaaaaggctgtaactt
tctTTCTAAGAAAGATATAAAAAACTATACaaagattgggcttttccaaa
aaaaaaacatataccccctgttgaggaggtccatttccgttccaaggcgT
AAGGTTtaatatgtggcggaattccattgggtgatacaaaaatctgtcaa
aaataactggaattccatgggagtagctttttaaatcctactaaaattca
gaattccagaggggtttaaacctgaaattgcctggaattccaggcgaGTA
CAGAATTTCCAGCCACAGGGCggtggacctcctcaacagggggtatatgt
tttttttctggaaaagcccatttgaAATCAGGtaagtttaaattttctaa
atagcctgatatttcatattttcaaaagagtagaacaaattttaattttt
ttattttcgtttttcttcttcatttttcattatttcaaaaaaagttctcC
TTGGAAATTATCTTTCAAATGGTGTATAGCTTTCTAACATAGCATCAATG
AGTGCTGAgaaaaagtaaagaaactaaagtgtccacatacttttgagaca
ggCCTTAGTAATTTCAACGAATGAAAACAAACTCTTGCAACTTTTTTATG
ATAACGGAAATCTttcattatcttttcaataaattcttctggaaataaaa
taatattatcATGAGCCCTGTTTTCAATGTATTGTGACCATAGATACATC
AACGTCACAAGAAATGAGCCCTGCTCGAAAATCTTCAATTCAGTAATTTT
CTATCTATCACTGGTTAAAATTTCAAGTGACACACTTATCAATTTTTAAT
GCTTTTGCTTCTAAATATTAGGAAGTAActaaaaagtaaaagtaaaaata
tcattgaaattattttcttccattttaCAACAAGGCCTAAGATGATTTTG
ACCAATCTCGAAAAGAGAGTATAGTTTGCCATGCTGTGGAAGTTACTTTA
AAATTCTTACTTTCAGGTTACAGACAGCAAAGTATCACGAAAACATGCAA
TATTGAAGTACGCAGAAGATGGAGAGATCTCCCTCAAACCGGTTAGTAGA
Atgacgtacacgttttttttagaagaacatctaaaatttttgaagccttt
ggatgttcttaactttttgggtttcaagccttaaaatgttcttattttca
ccattttgtgaccatttttacccattttccaaagaaacgggtgtttttga
gtccgaAAAACCTtaataatgttcttaacttgttcttaacattttggcca
tcgaagccttcttatatagtttgttctcataaaaaaaacgcGTACGGcta
caaattttgatagaatacgAAGTGAATATAATATtgttataagaatggtg
ttttcccgttttctcatttttaggaaaaatctTTCTGAAATATTCTAACG
ATATTCTTAAGTTAGTGTTCAAACCCAGCCTAAATCTAGCATTTAATTTA
TACCTCATTCAACATTCAAGCAAAAATTTGGCTGCAGGAataaatatatt
atttttggacctacctccgggtgccccggtggaggtcctataaattaacc
catgtccgttcgttcgttcgttcgtccgtccgNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNaaaaaattcatttccggccgaaaatgccggaaatatgccg
gaaaaaccggttttttggcattttctcaagatttcatcattagttttttc
tgatttttttgcaaaaacatgcgtattagcaatgcccaaaacttggctga
gtccgatttttgagaaaaaatcttttctggttgaaaatgccggaaataag
ccggaaatcgccatttttgcagattttcatcggactttttcctcaNGTGT
GTAGGTTTAGCGGTTTTTGTGCTCGTTCAACAATATTCAGGAGTGGAATt
aataaaatagttttttatttttaaaatagaattttatcaaaaggttTTGC
TTCTCTTTCTCTCTCATAGCGTCAACCCCCCTGACATTTGGGGGGGGTTA
CACTCAAAAGAAAACTGGGAGCTAAAATACAGACAAATATTTGGGGGGGG
CTGGAATTTCAATGGCAAGGCTAGGGGCTGACTATTTCTTCTATTATTTC
TATTTATATCGCCACATTTTTATCCAAAAACCTTTCATTTTACAGCCTat
taattttgtttgttttcactgtGTCCNgcacactgatgcaaaatgataat
acctaaaatgtgacggagcccgattttcgaaaaataaatttttttccggc
cgaaaaagccggaaatatgaTGCCGGAAATACtgattttttggcattttc
tcgagattttatcattagtttcttctgattttttgcacgaagaTGCNGAA
ACGATATCAAATCAGCAAATACTTTATACTAGGTATAGGACTGGGGGctg
cttaaaaaacttttaatattttggAGGACCTATTTTTTACCTGGGACCTA
GACCTGGGCTGACCCTATGTCTCAGCTTGAGATCATTGTGACAGATTTGG
TTTCAGTTTTTTTGGTCCTGAGATTCAAATCCTATTTTAACTTCTAAACC
AGTGTGCAAAGACTCATGCTTATGCGCCTCTTTGTTATGgtatttgtact
agtaataacatggtttagaggatgatttgggattaataaccccaaNtttt
tttcacacaaaaacattattgataacaatgctcaccatcaagcatgattc
aattgtcaataaaactgttttttgcgaccagaactttctatttatttttt
ccttacaaccctttcctctccccccatcaacaatcaatgatgattttttt
tgcgttaggcattttcgctaaacgctatattttctgactggttctttttc
atttttctcctcgcattgctatctaactttcatcatcaggtaggtccatt
cagcatctagcttgtttttgtTAAATTCAAGGATGGttgcatattcttaa
ttttttggccactTTCAGCGTAGAATATTGTTGTAATAAAGTGTGTAGGT
TTAGCGGTTTTTGTGCTCGTTCAACAATATTCAGGAGTGGAATtaataaa
atagttttttatttttaaaatagaattttatcaaaaggttTTGCTTCTCT
TTCTCTCTCATAGCGTCAACCCCCCTGACATTTGGGGGGGGTTACACTCA
AAAGAAAACTGGGAGCTAAAATACAGACAAATATTTGGGGGGGGCTGGAA
TTTCAATGGCAAGGCTAGGGGCTGACTATTTCTTCTATTATTTCTATTTA
TATCGCCACATTTTTATCCAAAAACCTTTCATTTTACAGCCTattaattt
tgtttgttttcactgtGTCCACCATCTTGAATTTTATCTATTATAGTCAA
TATAAATCTGATTTTCCTAGAAACGATATCAAATCAGCAAATACTTTATA
CTAGGTATAGGACTGGGGGctgcttaaaaaacttttaatattttggGGGA
CCTATTTTTTACCTGGGACCTAGACCTGGGCTGACCCTATGTCTCAGCTT
GAGATCATTGTGACAGATTTGGTTTCAGTTTTTTTGGTCCTGAGATTCAA
ATCCTATTTTAACTTCTAAACCAGTGTGCAAAGACTCATGCTTATGCGCC
TCTTTGTTATGgtatttgtactagtaataacatggtttagaggatgattt
gggattaataaccccaaAGTTCAgctattttgaagtgttttcaatgaaac
gaggggttattaatccaaaatcacccgagaataccatgttattccgcgtt
aattatatggtcaaaaaaagaattgaagaacactcaatcgctattcttct
cgaaacttataaaaacattcgaaactataaaaaaccttcgactgacactc
ttattttgattggcttaaaaatttcgtacgatattttgttaaccaatcaa
aatattgtgcgatacttttctttcaaccaatagaaattttacaaaaaagc
agggctattacggatttatcgccccgctcgtcctttacaaatctaagcta
aatgtaatcaaccatataattaagCGTGCTCTTAGATGCCTAAAAACATG
AAAGGGTTGGAAACTGCATCTCTAAATACTGAAataccccaaaataaggt
aactATAGACTAAACCTGGCTTTTTTAGAGCAAAATAGTAGACTATTCTt
gtgacagctgaaaatattttgaaaaattgataaattgatGGTCGTAATAA
TAAAGGCCTTGATGGGGTAGGAAAAgaatcgaaaaattaaaaagtgaggG
AATTTTTATTAGGGGCACCTGAGAGTAACCAACGAATACAACAATCTGTA
CCCAAGCCAGACCCGATATCTATAGGGGGAATTAACAAATATACTACCTC
CGttgtttcttaaattttcagattcacaAAAATCCAACCTTCCTTTACAT
CGAATCTACTGACAATTGGCAACCATTACAAAAGGATATTTGGCATACTT
TACAACATGGATCGAAGATTTCACTCTTACCCAACTCCCTGAAGTTTGAA
GTTGTATCGAAAAAGTAAGTTTTGTTTCAAGTTAATTTGGAGGGATTCAA
ATGTTTTGGTGACATATTCCCAACCAGGTGCACCGATCATCTTTTAAGAA
AAGTTCAGTACTTTCGACAACTTCTGGCAGTAGAGATTAGCATCCTAAGT
CTTTATTTAGAATTCGGTgcaatctttttttcaatataataatagacctt
ttcataaattacgtcacgaacatcgctTGCCTTGTTctgaaattattgcc
aaggtgattaacTCCTAGTGGATTTATTAaaactatttataaaaaaatca
tttaatgtctcaagggacataatcaccatagtaattgtttgaatacgagg
caagtcaTATTTgcgacgtaatttatgaaaaggtctatttattaTAAGTA
AAGTTAAATTTTGAGTAGTACTTNgacgtaatttatgaaaagatctattT
ATTATAAGTAAAGTTAAATTTTGAGTAGTACTTAACTTTACTTATAAGTA
ACAAACGGATAATACTAACCCAACGGATCTCGGAAAAAAAATACTTATCT
CACTTCATTTTTTCATAGACAAAGCACAGTCGAAAGCTTAAAAGAAAATG
GATCaggtttgtttttaatttatcaTTTATTATTAAAATGAATATTACAG
GTTCTAGGCACTCAgtgggcctctaaaccgatctcaatttacaaatttcg
tGTAACGAATTTCTTTGGATGGCTTTTCTTTGAAGCCTTTTATGGAAACA
GCAGCTACCACCTCAGACGGCAATTTATTCCACGTAGGGATGGTTCTGTA
GTAGAACGACTTTGTTTGCGGGCCGCGGNNNNNNNNNNNNNNCTGCACCA
TATCACAAAAAGTTCTACGAAACTCTAGTGTTGGTAATTGTAAGCTTCGT
AGTCTATCCTCATAAGAgagatttttgtaaagtttgacaAGCCTTGTTGC
ACGTCTCTGCACTCCTTCCAATAGGTTGACGTGTTTCCTTAGTTTCGGTG
ACCAGACTGATTGTGCATACTCAAGATGCGGTCGAACGAAAGTACAGTAC
AAAGTAAGAAAAATCTGTGGGCTAAGGTTTTGGAAGCCACGGTTAATAAC
TCCAAGCATCGAAATGGCCTTGTTGACTTGCTTAGAGATATGTTCTTCGA
AACTCAACTCTGCATCAATAACAACACCAAGATCTTTCTCTATGAAAACA
TGTTCCAGTTGATTTCCATTTAGAGTATATGGATGTGTGCATGTTTAATG
TTTGTAAACTTTCCGATTGTAAGTACATGGCACTTGTCTGGATAAAACTG
AAGCAACCAGTCTTTAGACCATTTCTCCAGCTCCTCAATATCTTTTTGTA
TGATAAGAGAGTCATCGATGGAGTCAACTTCTTTAAATATCTTTGTATCA
TCAGCAAAGAGTAGTATGGATGAGATGATTTTATCAGGAAGATCGTTGAT
ATATAGAACAAAGTACAAAAAGTAGCGGCCCAAGTACACTACCCTGTGGT
ATTCCACTTACTACATCATTTGTTGTTGATTTTGACTGATTCACTTTTAC
CTGTTGTTTACGTCCGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGTGCTCCTTTGCTCTTATAAATTGGAGTTACAT
ATGCTAATTTCCATTCTTCCGGTAGGACTCCCGTCGATAACGATTCGATC
ATTAAAAGTGCAAGGGGTTCTGCAATATAATCTACAAgttcttttaacat
ttttggatgCATATCATCTGGACCAAACGATTTGTTTTCATCAAGTTTCA
GTATAGATTTGTAAACAAGATCTTTTGTTATTGGTATTCTTTTGATGACG
CGATCTGTGCGGGACTGGAATTCGGGTAGTTCTCCTTCGGGTTCTTTTGT
GAAGACACTACAGAATTGTTTCTGCAGGATGTCTGCTTTTTCATGGTCTT
CATGTCTTAAAGATGAAATGTCATTTGGTGTTTCCAGCAGGGATGAAACC
CCACTTGCAGATTTTAGTTTACTTCGGACATGTGACCAGAAGATCTTTGG
TTTAATTTTCGACTTGTCACAGATACCTTTCTCGTATGACCTTCGAGCTT
GTGTTATCTTTCGGTTCACTCTGTTCCGTGATGTTACGTAGTTTGTACGG
TTCCTAGCTTTTTCTTCCGGGTCTTTAGACTTTAACCAGAGCCGGTGAAG
TTGTCGTTTTTGTTTTATCTCATTCTGGACCTCTTTTTTGATTGGTATAG
CTCCCTTGAGTTTCCAACTTTGattatcaatatattttattgGAATAAAC
TGGCTTCTCAGATCAAGAACTTTTCCTTTAAAGATTGTCCACATATCTGT
TACTGATTTTCCTCTTAATTCGTTGATCAAATGTTTCGACCATTCTCCAT
CATTCAGGTGTTGTTTCATCTTTGTGTAGTCACTGGTTTCATAACTGTAT
CTTTTCGAATTGGGTTTGCGTTGAGTGTAGCAATCAAACGTAAACACCAA
TATGCTATGGTCGCTCTTCCCAAGGGGGATCAGGTACTGAAGATCGCTTA
CTTGATTTTGTTCATGAGTAAGTATTAAGTCTATCGTTTAAGGTTCGTCT
GTTCCTCTGCATCGCGTTGGTTCATCAACAAGTTGATAGAAAAACGCGTC
TCTGAGAGCGTCCAAAAACTTTTCTTCCTTACTTTCCTCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGTTGTTGA
CCTTCTTGAGGCGGAATCCGTTTTTTGAGGAGCCACGGACTCGCCAGATC
CCACCTGTTTCGCTTTCATTCTTTCTTTTAGCTTCAATTAcaatattttt
gaattctttccTTTGATCAGGGGTTAGGTCTTCACAGATACTTATCCCTT
TATACATATTCACACCCTTCAATATGTGAAGGTTACCGAATATactttcc
ttttcttcttccttgtCAAATGAAACCAGCAATGGGCGTTTCTTGTCGGC
TACTTTTGCTCCAAGTCTTGTCATATGTTTGATCTTGACCTTAGCATGAA
GATTTTGGGTGAGTGTTTTCACCCACTCCTCGTCTTTCTTCGGTTGATCA
TCAGTGAATTCTTCAACACCGTGAATGATGATGTTTTTTGAACGTTTTAA
TTTGTCCTTTTCTTCCGCAGCTTCCTCTTTGTGCACCTCTTTCACGGCTA
TCTTTATATCGTCGTTCGAGGAAACAATTTGGCTGTCAGCAACCCAATCT
GCCTATACAATTACCtcaagggaacttattttggcgagaactaattttgg
cgaaattggCAAGCGAACTCGAAATTCgcctaatttaattttttttaggt
cattcgccaaattaagttctcgccatattttaaaaaaatcgttgattcgc
caaaataagttctcgccaaaattaaaatttttgggattttccctaaaata
acttcttgagttcacaaaaaagcttcaaataaagcaaaatagaacagatt
tacgctgtcattcgccaaagcaagttctcgccaaaattaaaaaaaatcgt
tgattcaccaaaataagttctggccaatattaaaaaaattcctggttcgc
caaaattagttctctccaaaattaaaaaataatttttaaatcgACCGTTC
GTCAAGATTAGTTCtcaccaaaaaaagtttcctTATTAAGGTTAACTTTT
GAACCACTCGAATAAATAATTCTTATAATATTTTTACTTCTCTACAAATT
CACTTGAACAAgctaaattgaagaaaaaaaatctattcaTCTTCGATTCT
GTTCGACTTAATTGATCAAAAAATGTCACAAGATTGGAGCTGTTGAGCCA
AAAAGTGTCAAGGGACAAAATAATCTGTTCGACTTAGCTAactttcgagt
tatggaggctcCAGTGTAGAGGCTTTTTTATTTGAGTTTActagagaaat
tttcaatttgctgacgaatttgttcgagttaggaGACGTTCGAGTAACAG
ATGTTAGAGTTATGGAGACCTCACTTTAGTCGAATTTTCAACGTAAATCG
AGAATTTTGTActtattgacgtcaaatatcatAAAGAAGCCCTGTTTTGA
CGTATTCAGCCTTGATTTCCTCAAgggttttgtttgatttgtttaaaTGT
ATCATctaaaatgtcagaaaattcgagaaaattcTCTCCTCAAACGCTTA
CCATCCCAATAGGTTGATTAAACTTCACGAGTTGAATGTGCGATATTTTG
TTCacttgggcttttccagaaaaaaagttgaatataggggggtggaggat
ataatagTTTTTGGAAATATActcccggacattgtgacttttgactcccc
ggacagcaggtctaacccccccCCCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNtttcccccccccccccagacaaggcaaatttt
gtagatttttcaataCAGTACCCCCGGACACTAAATCCTCCACCCTCTAC
CGTTTGTacgtacgaacattttctggaacaGCCCCTTTTAagcaggtagg
tccataaaaatatcaattgttTATTTACAGAGAAGAAAAAGTCGGAAAAT
GCTGCTACcgctaaagaaaataaagcaaaGGAAGACTCGCAACCCGTTGA
AATCAAACTGTCATCAACAGCGTCTGGTTAGTTCTTTCCTCTTCTACTTT
CTCGATTCCGAGTTAAATTTCTCGGTCCCATTCATTAATGTTGGAACAGT
ATATATATTCTAAAGGGTCCTgataattttcaaatgaaatcttGCATTAT
GTAGATAGGGGAGGTTACGTATAAATAAAGGGTACAGGCCCATTTACTCA
AAATTAACGGGGTTAGAGTGGAGCATAcgaattttacaaattttatttga
cAAACAAGGTCTAAAATTAGTTAGTGCAACATGTTTTCTGAGTTAAATGA
GATTGGAGGGGCACGAACTATCATTATACAATTCTTTGACCCCATTCTAA
GATTTGACCCCAATTGGTGAAACTTTGCGCACCTTGATATACGGAAATCT
GAAACTTCGTCAAAATATTAACTGTAAATCTTCCAGCTAAATCTTTCAAG
TACGCCTACTTTGTCTTCATTGCAAAAGTAAAAATTACACCTGAGATATT
AATGAAATCTCAAAATTCTATACTATAAAAGTCCATAAAAGtataaattg
tttatttttcagaGAAGAAAAAGTCGGAAAATGCTGCTACCgctaaagaa
gaaaataaagtaAAGGAAGACTTGCAACCCGTTGAAATCAAACTGGCATC
AACAGTGTCTGGTTAGCTCTTTCCTCTTCTACCTTCTCCATTCCAAGTTA
AATTTCTCGGTCCCATTTATTAATTATTGGAACAGTATATATTTTAAGGG
GTCCTGgtgactttcaaataaaattttgcaTTATGTAGATGGGGGAGATT
ACGTATAAATAAAAGGTACATGCCCATCTACTCAAAATTAATGGGGTTGG
ATTGGAACATAcgaattttacaaattttatttgagAAACAAGGTCTAAAA
TTAGTTAGTGCAACATATTTCCTGAGTTAAATGAGATCGGAGGGGCACCA
ACTATCATTATGCAATTCTTTGACATGAATATTCTAAGATTTGACCCCAA
TTGGTGAAACTTTGTGTACCTTGATGTACGGAAATCTTAAACTTCGTCAA
AATATTGACTCTAAATCTTTCAAGTACGCCTTCATTGCAAAAGTTAAAAT
TACACCTGAGATATTAATGAAATCTCAAAATTCTATACTATAAAAGTCCA
TAAAattataaattgttttttttttttcagagaagAAAAAGTCGGAAAAT
GCTGCTACCGCtaaagaaaataaagtaaaGGAAGACTCACCACCCATTGA
AATCAAACTGTCATCAACAGCGNGATGCTGCTACCGCtaaagaaaataaa
gtaaaGGAAGACTCACCACCCGTTGAAATGAAAATGTCATCAACAGCGTC
TGGTTAGTTCTTTCCTATTCTACCTTCTCCATTCCAAGTAAATTCGGTCC
CATCCCATTCATTAATATTGGAAAAGGAtattttcatgatattcatgacg
ttttctacggaaataccccggttttagccggtagtggcaaatttaaacta
gacaaaagctgtataaaatttgccactactggcaaaaaccggggtcctTC
CGTCATTTCACATTACGTCATGGATATTATGAATTTTGAGGGGTCCTGAT
AATTTTCAAATACAATTGTGCATTAAGTAAACATTTAACAGTGACATCAA
AATACCCAAACCCGAAACgaattgtcaattttgagaCGCAAGCCGTATTT
AGAACATTTTTCATTAACATTCACAGCCTAATTTCTTGTGAAATACTCTG
ATTGTAAGAGATTTAAAGGCAAGTGATACTATATATAAGTGTCAGACTTC
TTTCAACAGAGACTTCTTCAGGGAAAGAAACTATCCACAAAAGACGTGTA
CTACGATCCGATGAAATGTAAGGGAGGGTTTTAAGGTTTAAAGAACCTtg
catttactaaaaatagacaaaaagagcGACAAATTTCGGGAATTAACTGC
ATATAGTTTAAAGAACGTTAAATTACGGATGCGTGTTAAAATGCAtgatt
ctttagaggaacagactgtcAACTCTGTAATAAAATACCCACTCAGCAGT
TTACCCTCAATTTACGGTGACCTCCTGATTCTTGCATAACAGGGCTCTAA
ACTTCAACAGTTTAAAGTCCTCAGCTGAATTTATTTAATGAAGTCTcggt
gaaaatgaaagtttgatATGGaattaatatttcaaatttttcttattttt
gaacaGGGAAATCTCTATTGAGAACGAAACCACTTCCATCAAAGAAGAAT
GCGAAACGCCAGTTACCTTCTTGGATGTTAAATGTTTCTACGGGAGGaga
tgcaaagaaaaaaacaggTACATATCTAAACCAATCGTATATTATATATT
ACTAGAGTCGGGTGATTTTCCCATGCCTGCTTTAGCTTTTCCTTGAAGCC
TTTCATTGAATTTGAAGCTATCACTCACTGACCCTTATATATCCCTGGag
caagctatatccgccatctttgatcgaagttttttttgaattggtacccg
taaagaagccattgcagtgtgaaaattaacgtctaacggcgctacatcat
caaaagttttcgagggaaagtaaATCTAGCGCACttgatgcatttacacc
gctattgagtagtgccgccattagggtaccacttttcaaaaaactccgat
caaagattttgcttggccgggattgagaatcttggtccagggtatataaa
agGTCAGTGCTATCACTTCCCTAGGCAATTTGTTCCATGTTAGCTGTAAT
CGAACGATTTCGTGTGAACCTCGGAAtccatcattttcaaagttgtgTAT
AGTAATTCAGTCTCATGCTGTTTGGACTTGGTCGACGAGCCATCTTCTTG
GAGATCGTGGTCTTCATAGCAGGGGAGATTTTTATACACCTTTACCATAC
AAAATTCTCCAATATTGGTAGTTCCAATCTTCGTAGTCTCTTATCATAGG
GTAGACTTCGGTAGACTTATACCTGCCTCGAATCACCTTATACCTTATAT
AAAACGCTAGAATCCGCCATAATTGAAAGTAGAAAATATTTCGGTAcagg
caatttttttcaaacaaaacaaacaacctGTGGTCTACTGTGGCTCACTt
taacaaagatggcagattattttgcttcagctaGGGACGAAATGTtccat
ctagtgttttatataagatatatgTGGGTTTACAGCATAAGAATTTATTC
AATCGAAAGATACAGCTCAAAGTTTTacgctgattgactttgaaaaccat
aaagaacaacaaaaaaaaGCCCTTTTGCGATCCAACCAGGGAAAGTCTTT
AGGCTGTAATTTTTGActggataaatattttttgcattttagaCTTTAAG
ATTGATGGTTTCCTGATAATAAAATGAAGATCGtagcattattctacaag
aagttgattttcttcctCTTCACTTTTCCTCTTCATTcttccattatttt
ttttttattttttggatcTACCTCTGAGGTCCTTTAAATGAACCtatcgt
ccgttcgttcgtctgttaccagcttttctcgggattggcccattagtttt
ttcaatttttttttacaaagatgcatattagcaatgcccaaaatgtggcT
GAGtccattttttgagaaaaatgccggaaatcgccaattttgtatatttt
cattggactttttccttatatttctttgggtttttttcactcaaaaatat
tattgataacaatgcccaccatcaaacaTGATTCAACGCTATATTTTTAG
ACTGattgtcttcatttttttcgttattgttatataactttcatcatcag
gtagagGTCCATTGAGCatctaatttatttttttataataattccACTCC
ATAATATCTTTTCAAGGATCACAAAACCGCTAATTAATTCGACCTCTTTA
CAGCCtgttttgtctccgctgcagattatattgagaNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctctc
ccagatcgaaataatcgatgaaatcaagttgaaggcctgaaattgacatt
ctcgctcgaacttcaattttcgaaaaatggtaaattagccaaaagtggta
atatattatggcactgacAGGCACTGATTGTAGGCtgaaaaaaagttgtt
tataGTTTCATTCTTTAGTTTTCtttgtttaaagtttaaaggcTGAAgtg
tttgattttttctgaaccaGACGACGCCAGTCGAACCATCGAACCAAGAA
ATCCCGGTAaagttcgattgtgttcgataaCTGTTCGATGTGTTTGATTT
CAATTCCATAGAACTCGACCTCTACTCGTTCTCAGGGGCGGCCATAAATG
CACCATCAGGGTGGGGCAGAAGTAGTTGGCGCCTGTCCCGTAAAACAAAC
AGCATTGTTTAAGATCTACAAACCAATAGAACTCTATTTGAACTCTAaac
gaacttaatcgaacaatATATTATTATCGGACTAAAATCGAACATTGATT
TCTGGTAAAGTTCAATTACTTttcgatttggttcggtaatcgaacagtta
tcgttcaattagttcgatgaaattcgattgttcgattaCGAAAATTGATT
CGATAACGTTCGGTTGACGTCGTCTGGCCCAAGTTTAGCATTTTATGCTT
CCTTTTATGTTATTGTTCATTTAGTTATTTTGATTAAACAGATAATGAAT
ACACAGTGATTACAGTGTCACAATTGCCAGAGGGCCTTGATTTACATAAT
TTCTATTCCGCTTTTACTGGACTTGAATTCATAGGGCTTAAAACCTGTGA
AACAATAATTTGAAAGAGggcaagaatttttgtcataaaaatgtCCTAAC
TTTTGTTGAAATGTCTTAAATTGACATAAATTTTACACccaaaaatgtca
taaaatgtcCTAAAAAAGCATTAAGAGCAGTcataaattcataaaaaaat
tagctAAATCAAGAGTGGGAGACCTGATATTGTTGATCATTTCAACCGGC
AGGTATCAAAAGAGAGCTGAAATCCAAGAAAGCCAACATTTCAACTGAAC
AAAATGACATGTCAAAAACTATTGGAGGAGAGAGCTCAAAAGGTCGAAAA
ACAAGTCACGGTTTAAAGTCGCCTGATTTATCGGACGACGAAGTTCTCCC
TGAGAAGAAGACTTTGGCCAATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017675-exon-sc0000273-1491911889:223055..223234 | TCONS_00017675-exon-sc0000273-1491911889:223055..223234 | Clytia hemisphaerica | exon |
| TCONS_00017675-exon-sc0000273-1510915933:223055..223234 | TCONS_00017675-exon-sc0000273-1510915933:223055..223234 | Clytia hemisphaerica | exon |
| TCONS_00017675-exon-sc0000273-1575043694:223055..223234 | TCONS_00017675-exon-sc0000273-1575043694:223055..223234 | Clytia hemisphaerica | exon |
| TCONS_00017675-exon-sc0000273-1491911889:224571..224645 | TCONS_00017675-exon-sc0000273-1491911889:224571..224645 | Clytia hemisphaerica | exon |
| TCONS_00017675-exon-sc0000273-1510915933:224571..224645 | TCONS_00017675-exon-sc0000273-1510915933:224571..224645 | Clytia hemisphaerica | exon |
| TCONS_00017675-exon-sc0000273-1575043694:224571..224645 | TCONS_00017675-exon-sc0000273-1575043694:224571..224645 | Clytia hemisphaerica | exon |
| TCONS_00017675-exon-sc0000273-1491911889:228426..228568 | TCONS_00017675-exon-sc0000273-1491911889:228426..228568 | Clytia hemisphaerica | exon |
| TCONS_00017675-exon-sc0000273-1510915933:228426..228568 | TCONS_00017675-exon-sc0000273-1510915933:228426..228568 | Clytia hemisphaerica | exon |
| TCONS_00017675-exon-sc0000273-1575043694:228426..228568 | TCONS_00017675-exon-sc0000273-1575043694:228426..228568 | Clytia hemisphaerica | exon |
| TCONS_00017675-exon-sc0000273-1491911889:229123..229160 | TCONS_00017675-exon-sc0000273-1491911889:229123..229160 | Clytia hemisphaerica | exon |
| TCONS_00017675-exon-sc0000273-1510915933:229123..229160 | TCONS_00017675-exon-sc0000273-1510915933:229123..229160 | Clytia hemisphaerica | exon |
| TCONS_00017675-exon-sc0000273-1575043694:229123..229160 | TCONS_00017675-exon-sc0000273-1575043694:229123..229160 | Clytia hemisphaerica | exon |
| TCONS_00017675-exon-sc0000273-1491911889:235785..235863 | TCONS_00017675-exon-sc0000273-1491911889:235785..235863 | Clytia hemisphaerica | exon |
| TCONS_00017675-exon-sc0000273-1510915933:235785..235863 | TCONS_00017675-exon-sc0000273-1510915933:235785..235863 | Clytia hemisphaerica | exon |
| TCONS_00017675-exon-sc0000273-1575043694:235785..235863 | TCONS_00017675-exon-sc0000273-1575043694:235785..235863 | Clytia hemisphaerica | exon |
| TCONS_00017675-exon-sc0000273-1491911889:237190..237206 | TCONS_00017675-exon-sc0000273-1491911889:237190..237206 | Clytia hemisphaerica | exon |
| TCONS_00017675-exon-sc0000273-1510915933:237190..237206 | TCONS_00017675-exon-sc0000273-1510915933:237190..237206 | Clytia hemisphaerica | exon |
| TCONS_00017675-exon-sc0000273-1575043694:237190..237206 | TCONS_00017675-exon-sc0000273-1575043694:237190..237206 | Clytia hemisphaerica | exon |
| TCONS_00017675-exon-sc0000273-1491911889:238061..238171 | TCONS_00017675-exon-sc0000273-1491911889:238061..238171 | Clytia hemisphaerica | exon |
| TCONS_00017675-exon-sc0000273-1510915933:238061..238171 | TCONS_00017675-exon-sc0000273-1510915933:238061..238171 | Clytia hemisphaerica | exon |
| TCONS_00017675-exon-sc0000273-1575043694:238061..238171 | TCONS_00017675-exon-sc0000273-1575043694:238061..238171 | Clytia hemisphaerica | exon |
| TCONS_00017675-exon-sc0000273-1491911889:241457..241628 | TCONS_00017675-exon-sc0000273-1491911889:241457..241628 | Clytia hemisphaerica | exon |
| TCONS_00017675-exon-sc0000273-1510915933:241457..241628 | TCONS_00017675-exon-sc0000273-1510915933:241457..241628 | Clytia hemisphaerica | exon |
| TCONS_00017675-exon-sc0000273-1575043694:241457..241628 | TCONS_00017675-exon-sc0000273-1575043694:241457..241628 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000273 | supercontig | sc0000273:223055..241628 + |
Blast
BLAST of TCONS_00017675 vs. Swiss-Prot (Human)
Match: APLF (Aprataxin and PNK-like factor OS=Homo sapiens GN=APLF PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 3.487e-17 Identity = 39/93 (41.94%), Postives = 54/93 (58.06%), Query Frame = 1
Query: 115 DTGETFKVVHGETLIGRGPFLKVTDSKVSRKHAILKYAEDGEISLKPIHKNPTFLYIESTDNWQPLQKDIWHTLQHGSKISLLPNSLKFEVVS 393
D G + GET+IGRGP L +TD +VSR+HAIL+ A G++ +KPIH NP F PL+ ++W L G SLL + F ++S
Sbjct: 11 DGGPRVALAPGETVIGRGPLLGITDKRVSRRHAILEVA-GGQLRIKPIHTNPCFYQSSEKSQLLPLKPNLWCYLNPGDSFSLLVDKYIFRILS 102
The following BLAST results are available for this feature:
|
