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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017689 ID=TCONS_00017689|Name=TCONS_00017689|organism=Clytia hemisphaerica|type=transcript|length=2140bpRun BLAST on NCBI protein sequence of TCONS_00017689-protein >TCONS_00017689-protein ID=TCONS_00017689-protein|Name=TCONS_00017689-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp MNKDEEEDEEDYMSDKYLLNESKPGLMPKLFLDRHKRGESSSSKKKNTPKRun BLAST on NCBI transcript from alignment at sc0000273:127320..138866- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017689 ID=TCONS_00017689|Name=TCONS_00017689|organism=Clytia hemisphaerica|type=transcript|length=11547bp|location=Sequence derived from alignment at sc0000273:127320..138866- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000273:127320..138866- >TCONS_00017689 ID=TCONS_00017689|Name=TCONS_00017689|organism=Clytia hemisphaerica|type=CDS|length=4770bp|location=Sequence derived from alignment at sc0000273:127320..138866- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017689 vs. Swiss-Prot (Human)
Match: GPT11 (G patch domain-containing protein 11 OS=Homo sapiens GN=GPATCH11 PE=1 SV=3) HSP 1 Score: 172.17 bits (435), Expect = 2.899e-48 Identity = 102/257 (39.69%), Postives = 155/257 (60.31%), Query Frame = 2
Query: 92 YMSDKYL--LNESKPGLMPKLFLDRHKRGEXXXXXXXNTPKPKQDKHQSVKVKEHENRKEKLDQALDESNKGFAMLARMGFKKGMGLGKEGQGRSEPIPIDIKTGRGGVGKTSEEERKRTKRLEMYRIKAKRRKEDEENLKGDFKSRMRSKINERQVFADLCKSQKACHQLDQKKGMEEPIQSWYWTKQPLXXXXXXXXXXXXXXXXXXXN----EKLVILTCYLRTEHRYCIWCGITFNDENDLKENCPGDTFEDH 844
YMSD ++ + +PGL P L R R + ++ N +++ +S+K +E E R L AL NKGFA+L +MG+K G LGK G G EPIP++IKTG+ G+G + +RK ++LE YR K + + EE F+ R+++K +E ++ DL +SQ+AC QLD +K ++ P ++WYW + + +E++E +E ++ + ++ EKL ILT YLR EH YCIWCG + D+ DL NCPG T DH
Sbjct: 7 YMSDSFINVQEDIRPGL-PMLRQIREARRKEEKQQEANL----KNRQKSLKEEEQERRDIGLKNALGCENKGFALLQKMGYKSGQALGKSGGGIVEPIPLNIKTGKSGIGHEASLKRKAEEKLESYRKKIHMKNQAEEKAAEQFRMRLKNKQDEMKLEGDLRRSQRACQQLDVQKNIQVPREAWYWLRLEEETEEDEEEKEQDEDEYKSEDLSVLEKLQILTSYLREEHLYCIWCGTAYEDKEDLSSNCPGPTSADH 258 The following BLAST results are available for this feature:
BLAST of TCONS_00017689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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