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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017698 ID=TCONS_00017698|Name=TCONS_00017698|organism=Clytia hemisphaerica|type=transcript|length=1960bp
ATTCACGGTCCACTTTTCCTTTCCTCAGGAAGGTTCATTATAGTCGTAAC
GCtgcaataaaatacctttggcCTTGCACAATTTGTAAAGGGATTCTAAA
TAGTAATTCCCATGATGCGAAGGTGCATTGTCTGATTTAGCATAAAGTTG
ACACATGTTTGGAAAGTCCTTCTTTGCCTTTTCCAAAACAACATCTGCTA
GACAAAGTGAGTCAACTAGGGCTTGTTCACAGCGATAGACTGTTGTAAAA
TACAGTATACGTTCTTCATCAACTTTTtttcctatctttaaagaaaaaaa
catcgaCATCGACAAGAGTTATACCCTTCTTGCCAAAGTATTCTTTCTGG
CCTTCTCTGAAACGAGCTGGTAAAATCTTTTGGCAGAAGTCTATTAGCCA
AAACCCTGTTTCAGGTGATTATTGGTCAAATGCCAttatctttgttaatt
tttgctGAGCATCTCTAATTTGTTGTTTCATATATGCTTCAATATCTGCA
ATTGCAACATTAGCGTCGTATTGGAGGTCTCCATCGTTAGTTTCTTTGAC
AAGGTCCCGAATCTGGTTCAAAACTGAGTGAAGTTCAGTGCAATCAGCAC
ATTCTTCTTTACTGATTTTTGCGCATGTGTTCAAATCTGGATCATCTTTG
CAACTTAAAGCGAACCAAGTTGAGTGAgaagaaagttttgaagtttCTGA
ACATTTGACAGGGTAATTTGATTTGAGATATCTCTTTCCTTTTTCAAATG
ATTTACAAATAtcattttgcttcattttctcAGCAATATCGGTCAGGACT
TTAAAACCATTCATTCCAGCAGTAGTAACATCATTTAGTCCAGCTAAAGC
TTTTCTTTGTGAAGGATGATTCCATATGTAACACTCTCCACAAAGACGAG
TCAGAAATAGGAGAATATCCAGTTTCTTTACACGTCTCCTTGTAAAAGTG
AATAGTATGACTATACTTCATCGTTAAAATAGAATTAGCAATATTATGTA
CATTCCCGTTGTCAAACTGAATTTTTTAGTCCTCTTGTGAAAAGGGAATC
TAAAAAATGTTCAATCTTATCCTGGAGAATTCGTGAACGAGTGATTTTCT
CAGCTTTAGATGGCAGTTTTAAACCAGTATTCTCATTATTCAGTTTTTGT
GCTTGATCTATTTGGTGCTTTTTACAACCAACAAATCTCATTAATTATTC
ATCTTTGGTATGCTTATCATGGTTAACAACAGATACTATTATTATCTGTT
CAAATGAATCACTTTTCCTAAACAAGTTTACCAAAACAATCAAATCTGCC
GGAACAGATTCACTTTCCTCACTTTCATTATTAGTCTCCGGAAGGAattg
ttcgaaaaaaatttcagtggatgtttttttcattattctgaatatccaaa
aatgatgaaaatctaAAGACATCACTTCCTCACTTTGCCCGGATCTctca
gaaaatggctcttaagtcCAATTCTACTTTTCAATTTTCCCATTGCTTTG
GTATGCTCTTCATCTTTCTTTTTAACTTCCACTTCATTAAGCTCCTTTAT
TGTGTTTCTCAAAGCTTTGTTTCCATTTGGTTGTCCAGTCATGACCAAGA
AAAAATGTTCTCTTTAACCAACTCCGCACAATGTACGTTGTATAATAATG
CAAGAAGCGAgtgatttcaaattcaaaacacaCACGTTTTTGGTACATTT
TTGGTACGAGAATTTGGTCGAATTTACGCTGTTTCTTCGAGCTTTTCTTT
GCCATTCTTCTTTCATATTATTTTCTATCAGATTTCTTCTGTTTTTTAGC
TTGGTCTGGCTGGTGAGGAGTTTTTAGAgagcaaatttttaaaattcttt
atcaaatattacaaaatcaaaatgcAAAGCAAAGGTGATACTTTTTGGTG
TAAAATGGGCCGTTAGAGTGTACGAATGAAAAGGGAACGCGCCCCGCCCA
AATTATCCTA Run BLAST on NCBI protein sequence of TCONS_00017698-protein >TCONS_00017698-protein ID=TCONS_00017698-protein|Name=TCONS_00017698-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MNGFKVLTDIAEKMKQNDICKSFEKGKRYLKSNYPVKCSETSKLSSHSTW
FALSCKDDPDLNTCAKISKEECADCTELHSVLNQIRDLVKETNDGDLQYD
ANVAIADIEAYMKQQIRDAQQKLTKIMAFDQ Run BLAST on NCBI transcript from alignment at sc0000273:1214..3173 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017698 ID=TCONS_00017698|Name=TCONS_00017698|organism=Clytia hemisphaerica|type=transcript|length=1960bp|location=Sequence derived from alignment at sc0000273:1214..3173 (Clytia hemisphaerica)
TAGGATAATTTGGGCGGGGCGCGTTCCCTTTTCATTCGTACACTCTAACG
GCCCATTTTACACCAAAAAGTATCACCTTTGCTTTgcattttgattttgt
aatatttgataaagaattttaaaaatttgctcTCTAAAAACTCCTCACCA
GCCAGACCAAGCTAAAAAACAGAAGAAATCTGATAGAAAATAATATGAAA
GAAGAATGGCAAAGAAAAGCTCGAAGAAACAGCGTAAATTCGACCAAATT
CTCGTACCAAAAATGTACCAAAAACGTGtgtgttttgaatttgaaatcac
TCGCTTCTTGCATTATTATACAACGTACATTGTGCGGAGTTGGTTAAAGA
GAACATTTTTTCTTGGTCATGACTGGACAACCAAATGGAAACAAAGCTTT
GAGAAACACAATAAAGGAGCTTAATGAAGTGGAAGTTAAAAAGAAAGATG
AAGAGCATACCAAAGCAATGGGAAAATTGAAAAGTAGAATTGgacttaag
agccattttctgagAGATCCGGGCAAAGTGAGGAAGTGATGTCTTtagat
tttcatcatttttggatattcagaataatgaaaaaaacatccactgaaat
ttttttcgaacaatTCCTTCCGGAGACTAATAATGAAAGTGAGGAAAGTG
AATCTGTTCCGGCAGATTTGATTGTTTTGGTAAACTTGTTTAGGAAAAGT
GATTCATTTGAACAGATAATAATAGTATCTGTTGTTAACCATGATAAGCA
TACCAAAGATGAATAATTAATGAGATTTGTTGGTTGTAAAAAGCACCAAA
TAGATCAAGCACAAAAACTGAATAATGAGAATACTGGTTTAAAACTGCCA
TCTAAAGCTGAGAAAATCACTCGTTCACGAATTCTCCAGGATAAGATTGA
ACATTTTTTAGATTCCCTTTTCACAAGAGGACTAAAAAATTCAGTTTGAC
AACGGGAATGTACATAATATTGCTAATTCTATTTTAACGATGAAGTATAG
TCATACTATTCACTTTTACAAGGAGACGTGTAAAGAAACTGGATATTCTC
CTATTTCTGACTCGTCTTTGTGGAGAGTGTTACATATGGAATCATCCTTC
ACAAAGAAAAGCTTTAGCTGGACTAAATGATGTTACTACTGCTGGAATGA
ATGGTTTTAAAGTCCTGACCGATATTGCTgagaaaatgaagcaaaatgaT
ATTTGTAAATCATTTGAAAAAGGAAAGAGATATCTCAAATCAAATTACCC
TGTCAAATGTTCAGaaacttcaaaactttcttcTCACTCAACTTGGTTCG
CTTTAAGTTGCAAAGATGATCCAGATTTGAACACATGCGCAAAAATCAGT
AAAGAAGAATGTGCTGATTGCACTGAACTTCACTCAGTTTTGAACCAGAT
TCGGGACCTTGTCAAAGAAACTAACGATGGAGACCTCCAATACGACGCTA
ATGTTGCAATTGCAGATATTGAAGCATATATGAAACAACAAATTAGAGAT
GCTCagcaaaaattaacaaagataaTGGCATTTGACCAATAATCACCTGA
AACAGGGTTTTGGCTAATAGACTTCTGCCAAAAGATTTTACCAGCTCGTT
TCAGAGAAGGCCAGAAAGAATACTTTGGCAAGAAGGGTATAACTCTTGTC
GATGtcgatgtttttttctttaaagataggaaaAAAAGTTGATGAAGAAC
GTATACTGTATTTTACAACAGTCTATCGCTGTGAACAAGCCCTAGTTGAC
TCACTTTGTCTAGCAGATGTTGTTTTGGAAAAGGCAAAGAAGGACTTTCC
AAACATGTGTCAACTTTATGCTAAATCAGACAATGCACCTTCGCATCATG
GGAATTACTATTTAGAATCCCTTTACAAATTGTGCAAGgccaaaggtatt
ttattgcaGCGTTACGACTATAATGAACCTTCCTGAGGAAAGGAAAAGTG
GACCGTGAAT Coding sequence (CDS) from alignment at sc0000273:1214..3173 >TCONS_00017698 ID=TCONS_00017698|Name=TCONS_00017698|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at sc0000273:1214..3173 (Clytia hemisphaerica)
ATGAATGGTTTTAAAGTCCTGACCGATATTGCTgagaaaatgaagcaaaa
tgaTATTTGTAAATCATTTGAAAAAGGAAAGAGATATCTCAAATCAAATT
ACCCTGTCAAATGTTCAGaaacttcaaaactttcttcTCACTCAACTTGG
TTCGCTTTAAGTTGCAAAGATGATCCAGATTTGAACACATGCGCAAAAAT
CAGTAAAGAAGAATGTGCTGATTGCACTGAACTTCACTCAGTTTTGAACC
AGATTCGGGACCTTGTCAAAGAAACTAACGATGGAGACCTCCAATACGAC
GCTAATGTTGCAATTGCAGATATTGAAGCATATATGAAACAACAAATTAG
AGATGCTCagcaaaaattaacaaagataaTGGCATTTGACCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017698-exon-sc0000273-1491911889:1214..3173 | TCONS_00017698-exon-sc0000273-1491911889:1214..3173 | Clytia hemisphaerica | exon |
| TCONS_00017698-exon-sc0000273-1510915933:1214..3173 | TCONS_00017698-exon-sc0000273-1510915933:1214..3173 | Clytia hemisphaerica | exon |
| TCONS_00017698-exon-sc0000273-1575043694:1214..3173 | TCONS_00017698-exon-sc0000273-1575043694:1214..3173 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000273 | supercontig | sc0000273:1214..3173 . |
Blast
The following BLAST results are available for this feature:
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