TCONS_00017710 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017710
Unique NameTCONS_00017710
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length419

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017710 ID=TCONS_00017710|Name=TCONS_00017710|organism=Clytia hemisphaerica|type=transcript|length=419bp
ATAGGTTCACTTGTAGTTTGATAGGTTTGATCTTACTGTAGTTATACATT
CATTCAATAAGTGTCTGGCTTTTTTCTGGGCNATAGGTTTGATCTTACTG
TAGTTAGACATTCATTCAATAAGTGTCTGGTTTTTTTCTGGGCCATTTTC
GCAACAGTATACCCAAGAAAAATAGAGGAATGATTCCGGAAAAGTACCAA
GATACTACTCAAACACTCGTTGAACAGCAACTCAGACATACTGTTAGTTG
GTCTTAtgtcgacatccttctttagagacaatAGGAAGGTCGATATCACT
GATGGACTCCTCAACTTATaattgctaagcaaagaaaataagTTCCAATC
AGCTATTTTAAATCAGCTATTAGTGTAAATTGAACAACACCAAACTGAGT
TTTAATTAAACTAATCAAG
Run BLAST on NCBI

transcript from alignment at sc0000273:53553..53971

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017710 ID=TCONS_00017710|Name=TCONS_00017710|organism=Clytia hemisphaerica|type=transcript|length=419bp|location=Sequence derived from alignment at sc0000273:53553..53971 (Clytia hemisphaerica)
CTTGATTAGTTTAATTAAAACTCAGTTTGGTGTTGTTCAATTTACACTAA
TAGCTGATTTAAAATAGCTGATTGGAActtattttctttgcttagcaatt
ATAAGTTGAGGAGTCCATCAGTGATATCGACCTTCCTattgtctctaaag
aaggatgtcgacaTAAGACCAACTAACAGTATGTCTGAGTTGCTGTTCAA
CGAGTGTTTGAGTAGTATCTTGGTACTTTTCCGGAATCATTCCTCTATTT
TTCTTGGGTATACTGTTGCGAAAATGGCCCAGAAAAAAACCAGACACTTA
TTGAATGAATGTCTAACTACAGTAAGATCAAACCTATNGCCCAGAAAAAA
GCCAGACACTTATTGAATGAATGTATAACTACAGTAAGATCAAACCTATC
AAACTACAAGTGAACCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009910XLOC_009910Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017710-exon-sc0000273-1491911889:53553..53971TCONS_00017710-exon-sc0000273-1491911889:53553..53971Clytia hemisphaericaexon
TCONS_00017710-exon-sc0000273-1510915933:53553..53971TCONS_00017710-exon-sc0000273-1510915933:53553..53971Clytia hemisphaericaexon
TCONS_00017710-exon-sc0000273-1575043694:53553..53971TCONS_00017710-exon-sc0000273-1575043694:53553..53971Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000273supercontigsc0000273:53553..53971 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.68942	0.494234	0	0.561426	1.36696	1.62029	2.38921	0.203341	1.96373	2.22025	0.855803	1.12514	1.15977	0.816793	0.708158	0.61769	1.64871	2.09619	0.179589	0.375853	2.12345	3.24206	0	0	1.2697	3.72328	0.231653	0.494452	0.375024	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017710 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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