TCONS_00017720 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017720
Unique NameTCONS_00017720
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length504

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017720 ID=TCONS_00017720|Name=TCONS_00017720|organism=Clytia hemisphaerica|type=transcript|length=504bp
GTACACCATCATCATGATCTTCATCAGAGTTAATTTCAGAATCAGAACAA
AATAACTGATTTCTGAGTTCATCTTCATAGAAGCATGGTGTGTTAATATC
GTCCAAGAGAGACATGACAAAGGTTTGGTTGACAATGTAATGATGATGAA
AAACTGTAGAAAAATGGGATGGGATACTACCTTCTGGGCTGAATGTTCAA
TTGTATATGTACGTTGTTGTTGTAGAAAATATGTAGAAAATATGTAGAAA
AACTTGGAAATTAATGTCCTCTGTGAGTGCAAgtaaaaaagaataaataa
atttgtAATAGATGATTGATAATTCTGCTGATAATTCTGCTGATTTCTTG
TCTCTCCTTTCGTATCTCcgatggtttgttttgattaattcttttttcga
attttcgacGAAATTCAATCTGAGCATGCGCAGTAACCTAAATTTCGTGT
ACTTTTACAAGAAATCGTACAAAAGTTGGCTAAAAGTGGATCGAAAAACG
GCTG
Run BLAST on NCBI

transcript from alignment at sc0000273:273114..273617

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017720 ID=TCONS_00017720|Name=TCONS_00017720|organism=Clytia hemisphaerica|type=transcript|length=504bp|location=Sequence derived from alignment at sc0000273:273114..273617 (Clytia hemisphaerica)
CAGCCGTTTTTCGATCCACTTTTAGCCAACTTTTGTACGATTTCTTGTAA
AAGTACACGAAATTTAGGTTACTGCGCATGCTCAGATTGAATTTCgtcga
aaattcgaaaaaagaattaatcaaaacaaaccatcgGAGATACGAAAGGA
GAGACAAGAAATCAGCAGAATTATCAGCAGAATTATCAATCATCTATTac
aaatttatttattcttttttacTTGCACTCACAGAGGACATTAATTTCCA
AGTTTTTCTACATATTTTCTACATATTTTCTACAACAACAACGTACATAT
ACAATTGAACATTCAGCCCAGAAGGTAGTATCCCATCCCATTTTTCTACA
GTTTTTCATCATCATTACATTGTCAACCAAACCTTTGTCATGTCTCTCTT
GGACGATATTAACACACCATGCTTCTATGAAGATGAACTCAGAAATCAGT
TATTTTGTTCTGATTCTGAAATTAACTCTGATGAAGATCATGATGATGGT
GTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009920XLOC_009920Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017720-exon-sc0000273-1491911889:273114..273617TCONS_00017720-exon-sc0000273-1491911889:273114..273617Clytia hemisphaericaexon
TCONS_00017720-exon-sc0000273-1510915933:273114..273617TCONS_00017720-exon-sc0000273-1510915933:273114..273617Clytia hemisphaericaexon
TCONS_00017720-exon-sc0000273-1575043694:273114..273617TCONS_00017720-exon-sc0000273-1575043694:273114..273617Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000273supercontigsc0000273:273114..273617 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.120264	0.234552	0.680843	0.13322	0.324364	0	0	0.144751	0	0.125531	0	0.0800948	0.0799835	0	0	0	0	0	0.127843	0	0	0	0	0	0.258243	0	0	0.175991	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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