|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017731 ID=TCONS_00017731|Name=TCONS_00017731|organism=Clytia hemisphaerica|type=transcript|length=1153bp
ACCTTGGGTTCGAGTTCGAATGGAGAGTGCGCGCTGCGGATGGCAAGATG
AAGAAATACGGGGAGATTTTACCTGCAACGACGTGTGTTATTTCAACTCA
GACTGACTTGGCTGATTTGGAGCTTGATGTTGAACAACAACTGGTAGCAT
TTGTTGGTCTACCGCCTCATCACAGTCCGGTTAAACGCGTCCCTCCGGAG
ATTCCCGCCACATCACAAAAACCTGCCCGACCACAGAAATCCACCCCATT
ACAGCAGCTCGTCACACGCGACAATACCACTACCTTAACAAGGCCCGTAG
CAGCTGGAAAACCAAATGTATCACTAAAACTGCCACGCGACGGTCAAGTA
GAAAACGAGTTGCTGTCTTGGAAACCTCAGATCCGGCAAAATCACTGCCC
CTGATTTCGAACGCGCCTGGAAAGAAGGCTAAGACGGTCACTAACTGTCA
GAAATTAAAAAAGAGTAGGTGTGAAAAGTGTAAGGTTGTATACAAAGGTA
ATGAGAGGCATAGAACAAAGGAAGATCTTGACAACAATTTAATTGGTTGT
GATGGTGTCGACGGCGAGCACGAGTGCCACTATTGGATACACATAGGGTG
TGCTAAGCTACATGTTGAAAATGCAGATGAAATTGCTGATTTGAAGTTTC
TCTGCCCCAAACATAAGAAAGAGGCAAAGAAAAAATCTTGCTAGAAAATA
CGTTTTTTCTCTTTCATTGTGTTCGTTCAATTTGGTTATGGTTAATAGTA
ATCTTGTTCTTTTGTGGGAAGTCCTCGTTTTCATTTGCCCCAGCCTCAAT
ACACAAAttctttaatcaaactttttacaaatGTATATTCTCTTGGTTTG
TCTTGTTTAATACAGTGCATCAGTATTTTGTCCCGTCTTCCCACCCCCTC
TCATGGCAAATAACTTACTGAATCTAACTTCGACTAAAATCTAAATCCGA
CTTTCAACAACTTCCGTTATCCCTTGTATTTAGCTTCGACGACCCCAATG
ATCAGATATCGATTCTCAATAAACTTGTATATGACTGTATCGAATCACAC
GCTCCATTGAAAAGAGTACGGATAACCAGGCCGATTGCACCGTGGATGAA
AGATCCAAAAATTATTCAAGAACGTCAATTACTCGAAGATGCACGTGCGA
ACN Run BLAST on NCBI protein sequence of TCONS_00017731-protein >TCONS_00017731-protein ID=TCONS_00017731-protein|Name=TCONS_00017731-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
LGFEFEWRVRAADGKMKKYGEILPATTCVISTQTDLADLELDVEQQLVAF
VGLPPHHSPVKRVPPEIPATSQKPARPQKSTPLQQLVTRDNTTTLTRPVA
AGKPNVSLKLPRDGQVENELLSWKPQIRQNHCP Run BLAST on NCBI transcript from alignment at sc0000274:89363..90769+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017731 ID=TCONS_00017731|Name=TCONS_00017731|organism=Clytia hemisphaerica|type=transcript|length=1407bp|location=Sequence derived from alignment at sc0000274:89363..90769+ (Clytia hemisphaerica)
ACCTTGGGTTCGAGTTCGAATGGAGAGTGCGCGCTGCGGATGGCAAGATG
AAGAAATACGGGGAGATTTTACCTGCAACGGTAAGGAAACATTCCAATTA
tagatttttttgataatttcattTCTATAAGTGCGAGGGAATTCGGGAAG
CTGATTAATATATAGTAATTCACCTCTATTTTCTCGTTTTCGCCTGTAGA
CGTGTGTTATTTCAACTCAGACTGACTTGGCTGATTTGGAGCTTGATGTT
GAACAACAACTGGTATGTTTTTACTATATATAACAGTTATTTGGAAAGAC
TATCGAGCGTTTTGCTATTACAATAACAGCAATGAGGTGTATTACAGTAT
TAGTATTGACATTATTAGCACATTTAATGCTCTCATTTTTGGTTCAGGTA
GCATTTGTTGGTCTACCGCCTCATCACAGTCCGGTTAAACGCGTCCCTCC
GGAGATTCCCGCCACATCACAAAAACCTGCCCGACCACAGAAATCCACCC
CATTACAGCAGCTCGTCACACGCGACAATACCACTACCTTAACAAGGCCC
GTAGCAGCTGGAAAACCAAATGTATCACTAAAACTGCCACGCGACGGTCA
AGTAGAAAACGAGTTGCTGTCTTGGAAACCTCAGATCCGGCAAAATCACT
GCCCCTGATTTCGAACGCGCCTGGAAAGAAGGCTAAGACGGTCACTAACT
GTCAGAAATTAAAAAAGAGTAGGTGTGAAAAGTGTAAGGTTGTATACAAA
GGTAATGAGAGGCATAGAACAAAGGAAGATCTTGACAACAATTTAATTGG
TTGTGATGGTGTCGACGGCGAGCACGAGTGCCACTATTGGATACACATAG
GGTGTGCTAAGCTACATGTTGAAAATGCAGATGAAATTGCTGATTTGAAG
TTTCTCTGCCCCAAACATAAGAAAGAGGCAAAGAAAAAATCTTGCTAGAA
AATACGTTTTTTCTCTTTCATTGTGTTCGTTCAATTTGGTTATGGTTAAT
AGTAATCTTGTTCTTTTGTGGGAAGTCCTCGTTTTCATTTGCCCCAGCCT
CAATACACAAAttctttaatcaaactttttacaaatGTATATTCTCTTGG
TTTGTCTTGTTTAATACAGTGCATCAGTATTTTGTCCCGTCTTCCCACCC
CCTCTCATGGCAAATAACTTACTGAATCTAACTTCGACTAAAATCTAAAT
CCGACTTTCAACAACTTCCGTTATCCCTTGTATTTAGCTTCGACGACCCC
AATGATCAGATATCGATTCTCAATAAACTTGTATATGACTGTATCGAATC
ACACGCTCCATTGAAAAGAGTACGGATAACCAGGCCGATTGCACCGTGGA
TGAAAGATCCAAAAATTATTCAAGAACGTCAATTACTCGAAGATGCACGT
GCGAACN Coding sequence (CDS) from alignment at sc0000274:89363..90769+ >TCONS_00017731 ID=TCONS_00017731|Name=TCONS_00017731|organism=Clytia hemisphaerica|type=CDS|length=1206bp|location=Sequence derived from alignment at sc0000274:89363..90769+ (Clytia hemisphaerica)
CTTGGGTTCGAGTTCGAATGGAGAGTGCGCGCTGCGGATGGCAAGATGAA
GAAATACGGGGAGATTTTACCTGCAACGACGTGTGTTATTTCAACTCAGA
CTGACTTGGCTGATTTGGAGCTTGATGTTGAACAACAACTGGTAGCATTT
GTTGGTCTACCGCCTCATCACAGTCCGGTTAAACGCGTCCCTCCGGAGAT
TCCCGCCACATCACAAAAACCTGCCCGACCACAGAAATCCACCCCATTAC
AGCAGCTCGTCACACGCGACAATACCACTACCTTAACAAGGCCCGTAGCA
GCTGGAAAACCAAATGTATCACTAAAACTGCCACGCGACGGTCAAGTAGA
AAACGAGTTGCTGTCTTGGAAACCTCAGATCCGGCAAAATCACTGCCCCT
GACTTGGGTTCGAGTTCGAATGGAGAGTGCGCGCTGCGGATGGCAAGATG
AAGAAATACGGGGAGATTTTACCTGCAACGACGTGTGTTATTTCAACTCA
GACTGACTTGGCTGATTTGGAGCTTGATGTTGAACAACAACTGGTAGCAT
TTGTTGGTCTACCGCCTCATCACAGTCCGGTTAAACGCGTCCCTCCGGAG
ATTCCCGCCACATCACAAAAACCTGCCCGACCACAGAAATCCACCCCATT
ACAGCAGCTCGTCACACGCGACAATACCACTACCTTAACAAGGCCCGTAG
CAGCTGGAAAACCAAATGTATCACTAAAACTGCCACGCGACGGTCAAGTA
GAAAACGAGTTGCTGTCTTGGAAACCTCAGATCCGGCAAAATCACTGCCC
CTGACTTGGGTTCGAGTTCGAATGGAGAGTGCGCGCTGCGGATGGCAAGA
TGAAGAAATACGGGGAGATTTTACCTGCAACGACGTGTGTTATTTCAACT
CAGACTGACTTGGCTGATTTGGAGCTTGATGTTGAACAACAACTGGTAGC
ATTTGTTGGTCTACCGCCTCATCACAGTCCGGTTAAACGCGTCCCTCCGG
AGATTCCCGCCACATCACAAAAACCTGCCCGACCACAGAAATCCACCCCA
TTACAGCAGCTCGTCACACGCGACAATACCACTACCTTAACAAGGCCCGT
AGCAGCTGGAAAACCAAATGTATCACTAAAACTGCCACGCGACGGTCAAG
TAGAAAACGAGTTGCTGTCTTGGAAACCTCAGATCCGGCAAAATCACTGC
CCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017731-exon-sc0000274-1491911889:89363..89442 | TCONS_00017731-exon-sc0000274-1491911889:89363..89442 | Clytia hemisphaerica | exon |
| TCONS_00017731-exon-sc0000274-1510915933:89363..89442 | TCONS_00017731-exon-sc0000274-1510915933:89363..89442 | Clytia hemisphaerica | exon |
| TCONS_00017731-exon-sc0000274-1575043694:89363..89442 | TCONS_00017731-exon-sc0000274-1575043694:89363..89442 | Clytia hemisphaerica | exon |
| TCONS_00017731-exon-sc0000274-1491911889:89562..89624 | TCONS_00017731-exon-sc0000274-1491911889:89562..89624 | Clytia hemisphaerica | exon |
| TCONS_00017731-exon-sc0000274-1510915933:89562..89624 | TCONS_00017731-exon-sc0000274-1510915933:89562..89624 | Clytia hemisphaerica | exon |
| TCONS_00017731-exon-sc0000274-1575043694:89562..89624 | TCONS_00017731-exon-sc0000274-1575043694:89562..89624 | Clytia hemisphaerica | exon |
| TCONS_00017731-exon-sc0000274-1491911889:89760..90769 | TCONS_00017731-exon-sc0000274-1491911889:89760..90769 | Clytia hemisphaerica | exon |
| TCONS_00017731-exon-sc0000274-1510915933:89760..90769 | TCONS_00017731-exon-sc0000274-1510915933:89760..90769 | Clytia hemisphaerica | exon |
| TCONS_00017731-exon-sc0000274-1575043694:89760..90769 | TCONS_00017731-exon-sc0000274-1575043694:89760..90769 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000274 | supercontig | sc0000274:89363..90769 + |
Blast
The following BLAST results are available for this feature:
|
