|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017750 ID=TCONS_00017750|Name=TCONS_00017750|organism=Clytia hemisphaerica|type=transcript|length=871bpRun BLAST on NCBI transcript from alignment at sc0000274:297499..339223- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017750 ID=TCONS_00017750|Name=TCONS_00017750|organism=Clytia hemisphaerica|type=transcript|length=41725bp|location=Sequence derived from alignment at sc0000274:297499..339223- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00017750 vs. Swiss-Prot (Human)
Match: KIF12 (Kinesin-like protein KIF12 OS=Homo sapiens GN=KIF12 PE=1 SV=3) HSP 1 Score: 226.098 bits (575), Expect = 4.418e-68 Identity = 117/242 (48.35%), Postives = 162/242 (66.94%), Query Frame = 2
Query: 2 SYLEVYNEKVKDLLNPSNTLDSLPIRWSTENGFYVDNLFSAECDSADDLLEILREGSGYRQMGGHAMNDHSSRSHCMLIINIHSE-EEFTGDEEPGFPIIKHGKISFVDLAGSERVKETKTTGESLTESNNINKSLLTLGNCISALGDPRKKGSHIPYRESKLTKLLADSLGGDGYTLMIACISPSSHVTHDTLNTLRYANRAKNIKNKPVVKMDPREKLLQRLKRDMKLLKAENSYFRQQL 724
SYLE+YNE+V+DLL+ + LP+RW+ GFYV+ L E S + L+E+L+ G R+ H +N SSRSH +L + I + + +PG P + GK+ FVDLAGSE+V T + GE + E+N+IN+SLL LG+CIS L DP++K SHIP+R+SKLTKLLADSLGG G TLM+AC+SPS+ +TL+TLRYA+RA+ + +P P K QRL+ +M L+ EN + QL
Sbjct: 157 SYLEIYNEQVRDLLS-LGSPRPLPVRWNKTRGFYVEQLRVVEFGSLEALMELLQTGLSRRRNSAHTLNQASSRSHALLTLYISRQTAQQMPSVDPGEPPVG-GKLCFVDLAGSEKVAATGSRGELMLEANSINRSLLALGHCISLLLDPQRKQSHIPFRDSKLTKLLADSLGGRGVTLMVACVSPSAQCLPETLSTLRYASRAQRVTTRPQAPKSPVAKQPQRLETEMLQLQEENRRLQFQL 396 The following BLAST results are available for this feature:
BLAST of TCONS_00017750 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.