TCONS_00017763 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017763
Unique NameTCONS_00017763
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length748

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017763 ID=TCONS_00017763|Name=TCONS_00017763|organism=Clytia hemisphaerica|type=transcript|length=748bp
CGGTTGTTTAGAAAAAGCTGGATTTATAGCTAACAATGAAAAGTCACAAT
GGGAGCCTGTAACTGAGATTCAATGGTTGGGTATACAggtcaatttcaaa
aataaaacttactcTGTTTCTGAAAAACCCATCAAATCTTTACTGATTTc
acttgaaaacatttttcgacACCCAGCACGCGTCACAGCAAGAGAGTTAT
CTTGTGTAGCAGGGAAAAATAGTTTCTATGAAATTCGTTTTAAGAAATGT
TATTCGTCTAAAAACTCGTTTGATTTACAAAATTAATAGAATCCAGAGTG
TCTTGGGATAAGAGAATAGATTTGACATTTTATCACGACGTTCTTAGGGA
AttgttcttttgaaaattaaacttATGTGATTTGAATAAAAGATCAATTA
GAAAATATGAAGTACCacagttaaaaatattttcagatgctAGCGCCACG
GGAATTGGAGCAATTTTAAATATTATGtttgttataaaaattttacaaca
gaTAGAGAGAGGGGAGAGTTCCACGTACATGGAGTTATTTGGCTATTAAA
TATGCCATGGAGTCGTTATTGACCAGTTTTTAGacaataaaccaattttg
tgTCATACAGATAACATAAGTACAGCCAAAATTGTCAGGATGGGCAAGAA
TTAAAATTTGTTACAACAGTTGGCAAATGATGTATTTACGATTTGTAAGA
GAAAAGATATAAAATTGACAGTGACTTGGATTGCTCGAAAATACAACG
Run BLAST on NCBI

transcript from alignment at sc0000274:151595..152342

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017763 ID=TCONS_00017763|Name=TCONS_00017763|organism=Clytia hemisphaerica|type=transcript|length=748bp|location=Sequence derived from alignment at sc0000274:151595..152342 (Clytia hemisphaerica)
CGTTGTATTTTCGAGCAATCCAAGTCACTGTCAATTTTATATCTTTTCTC
TTACAAATCGTAAATACATCATTTGCCAACTGTTGTAACAAATTTTAATT
CTTGCCCATCCTGACAATTTTGGCTGTACTTATGTTATCTGTATGAcaca
aaattggtttattgtCTAAAAACTGGTCAATAACGACTCCATGGCATATT
TAATAGCCAAATAACTCCATGTACGTGGAACTCTCCCCTCTCTCTAtctg
ttgtaaaatttttataacaaaCATAATATTTAAAATTGCTCCAATTCCCG
TGGCGCTagcatctgaaaatatttttaactgtGGTACTTCATATTTTCTA
ATTGATCTTTTATTCAAATCACATaagtttaattttcaaaagaacaaTTC
CCTAAGAACGTCGTGATAAAATGTCAAATCTATTCTCTTATCCCAAGACA
CTCTGGATTCTATTAATTTTGTAAATCAAACGAGTTTTTAGACGAATAAC
ATTTCTTAAAACGAATTTCATAGAAACTATTTTTCCCTGCTACACAAGAT
AACTCTCTTGCTGTGACGCGTGCTGGGTgtcgaaaaatgttttcaagtgA
AATCAGTAAAGATTTGATGGGTTTTTCAGAAACAgagtaagttttatttt
tgaaattgaccTGTATACCCAACCATTGAATCTCAGTTACAGGCTCCCAT
TGTGACTTTTCATTGTTAGCTATAAATCCAGCTTTTTCTAAACAACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009952XLOC_009952Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017763-exon-sc0000274-1491911889:151595..152342TCONS_00017763-exon-sc0000274-1491911889:151595..152342Clytia hemisphaericaexon
TCONS_00017763-exon-sc0000274-1510915933:151595..152342TCONS_00017763-exon-sc0000274-1510915933:151595..152342Clytia hemisphaericaexon
TCONS_00017763-exon-sc0000274-1575043694:151595..152342TCONS_00017763-exon-sc0000274-1575043694:151595..152342Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000274supercontigsc0000274:151595..152342 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.16867	6.31555	4.23332	1.73648	0.477092	0.073802	0.457382	0.388565	0.362862	0.181536	0.367028	0.41847	0.106395	0.142404	0.242922	0.20003	0.521915	0.449007	0.0881683	0.261154	0.309265	0	1.65885	2.39206	0.282678	0.402721	0.291326	0.186362	2.29616	0.699871
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017763 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top