TCONS_00017771 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017771
Unique NameTCONS_00017771
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017771 ID=TCONS_00017771|Name=TCONS_00017771|organism=Clytia hemisphaerica|type=transcript|length=464bp
CACTCGATGAACCGTTCAAGGAGATAGAGTTTGATAAAGCGATTGAAAAC
ATGAAGTCAGAAAAAAGTCCAGGACCAGACGGTATCCTACCAGAAACCAT
CAAGTATGGAGGCAATGCTTTGAAAAACTACCTTCTAACTTTCTTCAACC
TATTCTGGATTACAGAACTTCTACCGTCAGACCTCGTTAACCCAAACATC
ACGATTCTGTTCAAGAAAGGAGATCGTAGTCAATGTGGGAATTATCGAGG
GATCTCGTTGGAAAGTTTCTTGCCGATATGATTTTGTAAAGACTGATTTC
TCTTGCATGTAGAGTTTACCCTGATTCACAGCAAGGCTATCGTGAAGGTC
GTGGTACGATCGATGGAATTTTCACAGTGAGGCAAATTATGGAGAAAAGT
AGGGAACAACATCGAGATTTATACATTGCTTTTATAGACTTCACCAAGGC
TTTTGACACGGTCA
Run BLAST on NCBI

transcript from alignment at sc0000274:269186..269649

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017771 ID=TCONS_00017771|Name=TCONS_00017771|organism=Clytia hemisphaerica|type=transcript|length=464bp|location=Sequence derived from alignment at sc0000274:269186..269649 (Clytia hemisphaerica)
TGACCGTGTCAAAAGCCTTGGTGAAGTCTATAAAAGCAATGTATAAATCT
CGATGTTGTTCCCTACTTTTCTCCATAATTTGCCTCACTGTGAAAATTCC
ATCGATCGTACCACGACCTTCACGATAGCCTTGCTGTGAATCAGGGTAAA
CTCTACATGCAAGAGAAATCAGTCTTTACAAAATCATATCGGCAAGAAAC
TTTCCAACGAGATCCCTCGATAATTCCCACATTGACTACGATCTCCTTTC
TTGAACAGAATCGTGATGTTTGGGTTAACGAGGTCTGACGGTAGAAGTTC
TGTAATCCAGAATAGGTTGAAGAAAGTTAGAAGGTAGTTTTTCAAAGCAT
TGCCTCCATACTTGATGGTTTCTGGTAGGATACCGTCTGGTCCTGGACTT
TTTTCTGACTTCATGTTTTCAATCGCTTTATCAAACTCTATCTCCTTGAA
CGGTTCATCGAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009960XLOC_009960Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017771-exon-sc0000274-1491911889:269186..269649TCONS_00017771-exon-sc0000274-1491911889:269186..269649Clytia hemisphaericaexon
TCONS_00017771-exon-sc0000274-1510915933:269186..269649TCONS_00017771-exon-sc0000274-1510915933:269186..269649Clytia hemisphaericaexon
TCONS_00017771-exon-sc0000274-1575043694:269186..269649TCONS_00017771-exon-sc0000274-1575043694:269186..269649Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000274supercontigsc0000274:269186..269649 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.204173	0.785001	0.778788	0	0	0.178872	1.03331	0.748757	0.664713	0	1.559	1.61407	0.731231	1.09147	0.405144	1.19485	0.474205	1.96091	0.986772	0.363218	0.661427	0.61072	0.806443	0	0.266629	1.0762	1.50382	0.289885	1.10277
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017771 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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