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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017772 ID=TCONS_00017772|Name=TCONS_00017772|organism=Clytia hemisphaerica|type=transcript|length=1083bp
CTCCCCTCATTTCTGCCATCTGCTgagggatttttttccaaaaattttcc
agtggggcaaACATATTAATAGAAATCCACgtgcaatttcaaaaaaaaat
tttctgagggCGGGCTACAGTTTTGAGCTTTTCAGgacaaaaagaataac
aaattttagTTCATGGTAAGCTGGCTGCTGTAGCGGACATTGGCAATCTg
ccattttattatttttctaaaatgccTAATACTTATCTGTTTTTAAGGGC
AGTGGTTAGAGTTTGGCCTTCGGGCTAGCTTTAGAATGGAGAAGTAAGGC
GACTCCTTCCCTCCATTAGTCTGGGTGTTCACAGTTGGGCCTGTGTCCTT
TGGTAGCATGCTATGCTTGCCATCCTACCCATAGCCCCCCTTGTCAGGGT
ACGACAACGGCAAACTTGATCGTCAACTTGGCATCATTTTTGGCACCGGC
AGATGTGTTTGTCAACTCGACATCGCTTCTGGCACCTGGAAGTAGTTCTT
TGTCAACCCGGCATTACTTCTGGCACCACGCAACAGGATATCCTTAGTAG
CCGTCCCAGCTTTGCTTCGCCGCTGCACCACGAGGGATCCTGTCAAGGGA
CATTGTTCTTACCCCAAGCAATGTCGTCACTCATTGGGATAGCCTTATAG
TATGATGGAGAAACTGATGCCCCACAACCGTCGGCAGTGGTGGAAAATAT
GCGTTACGAAAAGTTATCACTTGGTGCATGGAATGTTCGAACTACCAATG
ACAGCACAGATTCAGTCCGTCCAGAACGTGCAACAGCAATCATCTCACAC
GAACTACATAATGCTCGCATTGACATATGTGCCTTCAGCGAAGTCAGACG
AGAAGGCACCggcaatttaactgaaaaagaaTACTCTTTTTACTGGAGTG
GTGGTGCTTCGAAGGAAGCTGGGGTTGGTTTCGCCATCTCAAACTCACTG
TCCAATGTTCATCTTGACATCTCTGATAGACTCGTGACCCTAAGGATTCA
ACTAAAATCTGGAGTTCATTTGAAACTTGTCAGCGTTTACGCACCAACAA
TTCAACGTTCTCAAGAAGAGAAGGAACTCTTTT Run BLAST on NCBI protein sequence of TCONS_00017772-protein >TCONS_00017772-protein ID=TCONS_00017772-protein|Name=TCONS_00017772-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
MRYEKLSLGAWNVRTTNDSTDSVRPERATAIISHELHNARIDICAFSEVR
REGTGNLTEKEYSFYWSGGASKEAGVGFAISNSLSNVHLDISDRLVTLRI
QLKSGVHLKLVSVYAPTIQRSQEEKELF Run BLAST on NCBI transcript from alignment at sc0000274:270821..271903 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017772 ID=TCONS_00017772|Name=TCONS_00017772|organism=Clytia hemisphaerica|type=transcript|length=1083bp|location=Sequence derived from alignment at sc0000274:270821..271903 (Clytia hemisphaerica)
AAAAGAGTTCCTTCTCTTCTTGAGAACGTTGAATTGTTGGTGCGTAAACG
CTGACAAGTTTCAAATGAACTCCAGATTTTAGTTGAATCCTTAGGGTCAC
GAGTCTATCAGAGATGTCAAGATGAACATTGGACAGTGAGTTTGAGATGG
CGAAACCAACCCCAGCTTCCTTCGAAGCACCACCACTCCAGTAAAAAGAG
TAttctttttcagttaaattgccGGTGCCTTCTCGTCTGACTTCGCTGAA
GGCACATATGTCAATGCGAGCATTATGTAGTTCGTGTGAGATGATTGCTG
TTGCACGTTCTGGACGGACTGAATCTGTGCTGTCATTGGTAGTTCGAACA
TTCCATGCACCAAGTGATAACTTTTCGTAACGCATATTTTCCACCACTGC
CGACGGTTGTGGGGCATCAGTTTCTCCATCATACTATAAGGCTATCCCAA
TGAGTGACGACATTGCTTGGGGTAAGAACAATGTCCCTTGACAGGATCCC
TCGTGGTGCAGCGGCGAAGCAAAGCTGGGACGGCTACTAAGGATATCCTG
TTGCGTGGTGCCAGAAGTAATGCCGGGTTGACAAAGAACTACTTCCAGGT
GCCAGAAGCGATGTCGAGTTGACAAACACATCTGCCGGTGCCAAAAATGA
TGCCAAGTTGACGATCAAGTTTGCCGTTGTCGTACCCTGACAAGGGGGGC
TATGGGTAGGATGGCAAGCATAGCATGCTACCAAAGGACACAGGCCCAAC
TGTGAACACCCAGACTAATGGAGGGAAGGAGTCGCCTTACTTCTCCATTC
TAAAGCTAGCCCGAAGGCCAAACTCTAACCACTGCCCTTAAAAACAGATA
AGTATTAggcattttagaaaaataataaaatggcAGATTGCCAATGTCCG
CTACAGCAGCCAGCTTACCATGAActaaaatttgttattctttttgtcCT
GAAAAGCTCAAAACTGTAGCCCGccctcagaaaatttttttttgaaattg
cacGTGGATTTCTATTAATATGTttgccccactggaaaatttttggaaaa
aaatccctcAGCAGATGGCAGAAATGAGGGGAG Coding sequence (CDS) from alignment at sc0000274:270821..271903 >TCONS_00017772 ID=TCONS_00017772|Name=TCONS_00017772|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at sc0000274:270821..271903 (Clytia hemisphaerica)
AAAGAGTTCCTTCTCTTCTTGAGAACGTTGAATTGTTGGTGCGTAAACGC
TGACAAGTTTCAAATGAACTCCAGATTTTAGTTGAATCCTTAGGGTCACG
AGTCTATCAGAGATGTCAAGATGAACATTGGACAGTGAGTTTGAGATGGC
GAAACCAACCCCAGCTTCCTTCGAAGCACCACCACTCCAGTAAAAAGAGT
AttctttttcagttaaattgccGGTGCCTTCTCGTCTGACTTCGCTGAAG
GCACATATGTCAATGCGAGCATTATGTAGTTCGTGTGAGATGATTGCTGT
TGCACGTTCTGGACGGACTGAATCTGTGCTGTCATTGGTAGTTCGAACAT
TCCATGCACCAAGTGATAACTTTTCGTAACGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017772-exon-sc0000274-1491911889:270821..271903 | TCONS_00017772-exon-sc0000274-1491911889:270821..271903 | Clytia hemisphaerica | exon |
| TCONS_00017772-exon-sc0000274-1510915933:270821..271903 | TCONS_00017772-exon-sc0000274-1510915933:270821..271903 | Clytia hemisphaerica | exon |
| TCONS_00017772-exon-sc0000274-1575043694:270821..271903 | TCONS_00017772-exon-sc0000274-1575043694:270821..271903 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000274 | supercontig | sc0000274:270821..271903 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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