TCONS_00017806 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017806
Unique NameTCONS_00017806
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1685

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017806 ID=TCONS_00017806|Name=TCONS_00017806|organism=Clytia hemisphaerica|type=transcript|length=1685bp
Ctgggagaagaaaaaaaaatttaaaaaagtgggaaaaaaggaaattgaaa
TACTGTAAGCTCTTGTacgaaatagaaataaaaaccGTGTGATAACTATA
TTTTGATGTTTGCAGGACTTAATGTACCAAATGTTGTCTGGCCTCGATTA
CCTACACATCAACAGATTGATTCACAGAGATATCAAGCCTCAAAATATCC
TTATCACTAAAAATAAGCAAGTCAAAATAGCAGATTTTGGGCTTGCTAGG
GTTTACGGTTTCTGTAAACTAATCACATCTGTGGTGGTGACATTATGGTA
CAGATCTCCCGAGCTTCTCTTGCAATGTCCTTATGCTACATTAGTCGACC
TGTGGAGTGTGGGTGCTATCATGGCAGAAATGTACAATCGAAGGCCTCTT
TTCCCTGGCAAGAGTGACGTTGATCAACTACAAAAAGTTATAAATATAAT
CGGTGCACCTGAGCAAAAAGAATGGCCAGAAAAATCTTCTTTACCATGGA
AAAACTTCATGAATTGCAAAGGGATCAATCTGCGTCACCTTGTCCCTGAC
ATTAGCTCCGAAGGATTGAGTCTTTTAAAGGGTCTTTTGGTGTTTGATCC
AAGCAAACGTTTTAATGCACAACAAAGTTTAGCGCATCCCTATTTTGACG
ATATCGATAGAGGAGATAGTCAAGACTCTGGGATCTCTTCACAAATCTTA
AGCGAAGCAGAACAAATTGAAGAAGCCAAGAAGTCTATACTATCTTTATC
GAGTAGTGAGACTGTGGATTCTGGAGTGAGTAGCATCTACGACTCGTCAG
CACATAGTGACTATAGATCTCTCTCAAGAACAGACTCAGGTATTTGTGTA
TCACCTACACTTTCGAATGGGAACGTTTCGAATGCTGATCTTCACGATTG
TTGCTCCACCTCTTCCTTAAACGATTGTATCAATAATCACACGTCGTATG
AAGAAGCTAGAGAGTCACCAAAACGCGTTTTTCCCGCAGATAATGACGAT
GATAGTATTCTAAAACCCGTTCCTAATAACAATGACAATTTTCCGAAACA
AGGTTCTCCCGCGGGTAAGAAACATGATAGTTTAACGAAAAATGAGAAAC
GCGTTTTAAACGAGGATGATGACAATGTATCCAAATCCCCTCCACGTAAA
TTACAGCGAAGAAATGAAAATGATTAGATAGAATTGGGTTATTCATCATT
TGTGTGTATAACGTCCATTttatttagaatttagaaagtATTTAAATTAC
TCTAGATAATGATATCTatttatccgcaaaatttaaaggACCTGCCATTT
TGCTCCATAGAAGTGATTGATAAACCACGATAAACAATTTTGATTCAAAA
CCAAATTTATAATGCCCTTTTATAAACATTATATTTTGAATACAGTAGAA
AATTgtctcaatttctaattttcggATAATAGTTATGATACGATAGATTT
AAAACCACATTTACTTTAGGAATTTAATTAACACATTCGCATGGAGAGag
atttttgtatttatctatcgcttattttaacatttttaaactGTGTAAAC
ATTATATTTTCCGAGCGAGGGGTAAAAGAAATCATAAACCATACATCCAC
TTTTGAACTTCTTTTGAGCCTTTTATTGATTGTCGCCCATTGCATAGTAT
GAACCCTCTCTTTGTGAGAAGGGGTGGGTAAAAGC
Run BLAST on NCBI

protein sequence of TCONS_00017806-protein

>TCONS_00017806-protein ID=TCONS_00017806-protein|Name=TCONS_00017806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=351bp
MYQMLSGLDYLHINRLIHRDIKPQNILITKNKQVKIADFGLARVYGFCKL
ITSVVVTLWYRSPELLLQCPYATLVDLWSVGAIMAEMYNRRPLFPGKSDV
DQLQKVINIIGAPEQKEWPEKSSLPWKNFMNCKGINLRHLVPDISSEGLS
LLKGLLVFDPSKRFNAQQSLAHPYFDDIDRGDSQDSGISSQILSEAEQIE
EAKKSILSLSSSETVDSGVSSIYDSSAHSDYRSLSRTDSGICVSPTLSNG
NVSNADLHDCCSTSSLNDCINNHTSYEEARESPKRVFPADNDDDSILKPV
PNNNDNFPKQGSPAGKKHDSLTKNEKRVLNEDDDNVSKSPPRKLQRRNEN
D
Run BLAST on NCBI

transcript from alignment at sc0000276:266842..272026-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017806 ID=TCONS_00017806|Name=TCONS_00017806|organism=Clytia hemisphaerica|type=transcript|length=5185bp|location=Sequence derived from alignment at sc0000276:266842..272026- (Clytia hemisphaerica)
CTGGGAGAAGAAAAAAAAATTTAAAAAAGTGGGAAAAAAGGAAATTGAAA
TACTGTAAGCTCTTGTACGAAATAGAAATAAAAACCGTGTGATAACTATA
TTTTGATGTTTGCAGGACTTAATGTACCAAATGTTGTCTGGCCTCGATTA
CCTACACATCAACAGATTGATTCACAGAGATATCAAGCCTCAAAATATCC
TTATCACTAAAAATAAGCAAGTCAAAATAGCAGATTTTGGGCTTGCTAGG
GTTTACGGTTTCTGTAAACTAATCACATCTGTGGTGAGTTCATATTTACT
TTGTTTAATTTTCCAATCAGTTATTCTTTTTTGGGAAACTAATTTTGTCA
AATGGATTGGATGCGTGTTTTTTTGTCTAAAATGAACGTTTGAAAAATTG
CCCTCAAATCTAAAAGCAAATTTCAGGCTGGAGCTAAAGAAAAAATGTGT
ATTAAAAGAAATGTTTTTTTAATAACCTAACCATTATATTTTTTCTCCAA
ACTGGACATCGTTACGACCAAACGACTAAATTATGATGACGTGACAACTT
ATGACAAAATTTTGCCATTTACTGATGACGTTATTGCCATCCGATGACTC
CAAAATAGGACTCTCTCTCATCCTTGTTTTCATGATTATAGGTGGTGACA
TTATGGTACAGATCTCCCGAGCTTCTCTTGCAATGTCCTTATGCTACATT
AGTCGACCTGTGGAGTGTGGGTGCTATCATGGCAGAAATGTACAATCGAA
GGTATGTTAGACCAACTAATTTGTTACATCTAAATTTAATGGTATTTTTT
TGTCTCGATTGGACGGAGAATTGCGAAGGTCTCTGCTTGCGAAAGTTTGG
ACGCCTAAAATTTAATGTCCCCCATTATTGATCGGAATTCAAAGAAACAT
GGGTACGCGCATCAAAAGCGCTAGGATGCTAGTCAAAAATAGTGTGACAT
TTTTATTTCTCCAAAAAAACACCAAATTTAGAATTTTGTCAATAACTTTC
TCAGATCTTGGTATCCTGAAATAAGATTTCAGGAGGTGATAGAGCTAATG
AAGACAAAGCCATGGATATAGATATTTCCCTTATTCGAGCCAGTTTGAGG
TTGACAGACCAAATATGACCATTTCAAGGAAATGTCATCCTCAGAAAAGG
GAACTAAAAAGGAAATGTAAAAAATGGTGAGAATAGCCTCCTGGATAGTT
ATACAAGACAAAAAGTGTTAAAAGAACCAAGATTTCATGTTATATTACCT
AATTTGAGGTTGACAAAGTCGAAGTTATTAAAATGGACTCGTAAACCTCA
AAATTTGGACTTTGAACATTACAATATGTTTTAAGTAAGGCAAAAAAGCT
AAGCAAAGATAGATTTTTAAACAAAACCCATTAAAATGAGCTGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTAAACAAAA
CCCATTAAAATGAGCTGTTTTTGAGGTTGACAAGCCGCAAAAGTCTGTAT
TGAGTCAAAAGTGGGGAGAAAAGGCTTTTTGGGCTGTCAACCTATATACT
ATTTTTGACCAGCATCCTAGATATACTTCTAAGTTTGTGATGTAGCGCCG
TTTGACACCAGACAACGTTATAAGCACTAGCTTAGCATCTTCGCTAATAA
CCCTGTTCTAAAAACTCCAATAAAACATATTAGGTGAGCTGGATCATTGA
GAAACCAAGGTCTCCAGGAGGGTTCTTTATTACTCTTTATTAAGACTAAA
CTCAGTGATTTATAAATGACAATTATAAATGGCTCTTTACCATTCTGTGG
TTCCTTGTAAATGATTCAGTTAAGGAATGCTGAATCATACTACAAAGCTG
TTTTCATCGACTTTTAACGTTTTTTGATTCCTTGCCCTACCCATATTCTG
GTGAAAGTATTTTCATGTCGAACCCAATTGAAGATTAGCCTGAGGAAATC
TTGATCTTAACTTGAGATGAACTTAAAAAGTGAAAGTTACAGAAGTCCGT
CTGTTTTTGTTAACAATTTATTCGTCGGTAACAAAATGATCACAAGACTT
ACACGGATCTTCACATCGCATTGTTTTTGTTATAGATTTCTAACACTCCG
GCAATAAATGAAACCCGGTTTCAGTATTTTCAGACCTAAGACGATGAAAG
TCCTATCGTTTTTTCTTCAGGCCTCTTTTCCCTGGCAAGAGTGACGTTGA
TCAACTACAAAAAGTTATAAAGTAAGAAACAATTCTATAGAACGATTCAC
GAAGGATAGTCTGATGGAGTTAGCCTGACAAAATGGTATGGAGATGGAAT
TTAAAACAGGTCGAGGGACATGTTGGGAATCGCTGGAATAAAAAGCCCCA
CCCCAGGAAGACTGGAAAACCCTGACATGATATAATGATTTTGTATCACG
CGGCAAAAAAGCGTTTTAGCTCGTGCTAACTGATGGTCTAAATATATTGG
CCTATGAGCAGGACTACAAGATGTACGGGACATTAAGAAAATCATAGGAT
AAAATATTTAGGGGTTGGGCTTTACTTTTAGTAATTTCTAACATATTCCT
GGACCGCTGTGCCGAATTCCATATTTCTGACTAGTAGAAACAAGTTTTAG
TGTATTAATTTTCTGACCCTTTTTTGATAAAACTTTTACAAATTGCCCTA
ACCCAATCATCAATTTCAATACAGTTTTGAAACTACTTTTTTCTGTCCAA
TGACTGTCTGTATATCTCTTGACCATGTTGTCAACCTTCTTTTCCAGTAT
AATCGGTGCACCTGAGCAAAAAGAATGGCCAGAAAAATCTTCTTTACCAT
GGAAAAACTTCATGAATTGCAAAGGGATCAATCTGCGTCACCTTGTCCCT
GACATTAGCTCCGAAGGATTGAGTCTTTTAAAGGTATTGCTTGTTGATTA
TGTTCTTCACCCGTTTCGCTCCGAAACGAAATGAACCATTCTATTGGTTA
GAAGTGACGTAAGTCATGAATTTAACCAATAGATTGGCTTAATTTCTTTT
CGGAGCGAAACGGAACCGTAGCCTGCGAACATTGTTCTTATCTAACCTAG
CTAAGGTCAAGTTCAAAATACAAGAGTCTAAGGGATAAGAGTCGGAAGTA
CACGATTCCGATATAACACCTTAAATACTCGGGCCCTCATTTTATGTTTT
TATGTTAGACTGAACGATTTTGTAAAGCAGTCGAAATGTATTTAAATTGC
TTTCTTAAAACAATTTATTGCATTTTTCAGGGTCTTTTGGTGTTTGATCC
AAGCAAACGTTTTAATGCACAACAAAGTTTAGCGCATCCCTATTTTGACG
ATATCGATAGAGGAGATAGTCAAGACTCTGGGATCTCTTCACAAATCTTA
AGCGAAGCAGAACAAATTGAAGAAGCCAAGAAGTCTATACTATCTTTATC
GAGTAGTGAGACTGTGGATTCTGGAGTGAGTAGCATCTACGACTCGTCAG
CACATAGTGACTATAGATCTCTCTCAAGAACAGACTCAGGTATTTGTGTA
TCACCTACACTTTCGAATGGGAACGTTTCGAATGCTGATCTTCACGATTG
TTGCTCCACCTCTTCCTTAAACGATTGTATCAATAATCACACGTCGTATG
AAGAAGCTAGAGAGTCACCAAAACGCGTTTTTCCCGCAGATAATGACGAT
GATAGTATTCTAAAACCCGTTCCTAATAACAATGACAATTTTCCGAAACA
AGGTTCTCCCGCGGGTAAGAAACATGATAGTTTAACGAAAAATGAGAAAC
GCGTTTTAAACGAGGATGATGACAATGTATCCAAATCCCCTCCACGTAAA
TTACAGCGAAGAAATGAAAATGATTAGATAGAATTGGGTTATTCATCATT
TGTGTGTATAACGTCCATTTTATTTAGAATTTAGAAAGTATTTAAATTAC
TCTAGATAATGATATCTATTTATCCGCAAAATTTAAAGGACCTGCCATTT
TGCTCCATAGAAGTGATTGATAAACCACGATAAACAATTTTGATTCAAAA
CCAAATTTATAATGCCCTTTTATAAACATTATATTTTGAATACAGTAGAA
AATTGTCTCAATTTCTAATTTTCGGATAATAGTTATGATACGATAGATTT
AAAACCACATTTACTTTAGGAATTTAATTAACACATTCGCATGGAGAGAG
ATTTTTGTATTTATCTATCGCTTATTTTAACATTTTTAAACTGTGTAAAC
ATTATATTTTCCGAGCGAGGGGTAAAAGAAATCATAAACCATACATCCAC
TTTTGAACTTCTTTTGAGCCTTTTATTGATTGTCGCCCATTGCATAGTAT
GAACCCTCTCTTTGTGAGAAGGGGTGGGTAAAAGC

Coding sequence (CDS) from alignment at sc0000276:266842..272026-

>TCONS_00017806 ID=TCONS_00017806|Name=TCONS_00017806|organism=Clytia hemisphaerica|type=CDS|length=5280bp|location=Sequence derived from alignment at sc0000276:266842..272026- (Clytia hemisphaerica)
GGTCTTTTGGTGTTTGATCCAAGCAAACGTTTTAATGCACAACAAAGTTT
AGCGCATCCCTATTTTGACGATATCGATAGAGGAGATAGTCAAGACTCTG
GGATCTCTTCACAAATCTTAAGCGAAGCAGAACAAATTGAAGAAGCCAAG
AAGTCTATACTATCTTTATCGAGTAGTGAGACTGTGGATTCTGGAGTGAG
TAGCATCTACGACTCGTCAGCACATAGTGACTATAGATCTCTCTCAAGAA
CAGACTCAGGTATTTGTGTATCACCTACACTTTCGAATGGGAACGTTTCG
AATGCTGATCTTCACGATTGTTGCTCCACCTCTTCCTTAAACGATTGTAT
CAATAATCACACGTCGTATGAAGAAGCTAGAGAGTCACCAAAACGCGTTT
TTCCCGCAGATAATGACGATGATAGTATTCTAAAACCCGTTCCTAATAAC
AATGACAATTTTCCGAAACAAGGTTCTCCCGCGGGTAAGAAACATGATAG
TTTAACGAAAAATGAGAAACGCGTTTTAAACGAGGATGATGACAATGTAT
CCAAATCCCCTCCACGTAAATTACAGCGAAGAAATGAAAATGATTAGTAT
AATCGGTGCACCTGAGCAAAAAGAATGGCCAGAAAAATCTTCTTTACCAT
GGAAAAACTTCATGAATTGCAAAGGGATCAATCTGCGTCACCTTGTCCCT
GACATTAGCTCCGAAGGATTGAGTCTTTTAAAGGCCTCTTTTCCCTGGCA
AGAGTGACGTTGATCAACTACAAAAAGTTATAAAGTGGTGACATTATGGT
ACAGATCTCCCGAGCTTCTCTTGCAATGTCCTTATGCTACATTAGTCGAC
CTGTGGAGTGTGGGTGCTATCATGGCAGAAATGTACAATCGAAGATGTAC
CAAATGTTGTCTGGCCTCGATTACCTACACATCAACAGATTGATTCACAG
AGATATCAAGCCTCAAAATATCCTTATCACTAAAAATAAGCAAGTCAAAA
TAGCAGATTTTGGGCTTGCTAGGGTTTACGGTTTCTGTAAACTAATCACA
TCTGTGGGTCTTTTGGTGTTTGATCCAAGCAAACGTTTTAATGCACAACA
AAGTTTAGCGCATCCCTATTTTGACGATATCGATAGAGGAGATAGTCAAG
ACTCTGGGATCTCTTCACAAATCTTAAGCGAAGCAGAACAAATTGAAGAA
GCCAAGAAGTCTATACTATCTTTATCGAGTAGTGAGACTGTGGATTCTGG
AGTGAGTAGCATCTACGACTCGTCAGCACATAGTGACTATAGATCTCTCT
CAAGAACAGACTCAGGTATTTGTGTATCACCTACACTTTCGAATGGGAAC
GTTTCGAATGCTGATCTTCACGATTGTTGCTCCACCTCTTCCTTAAACGA
TTGTATCAATAATCACACGTCGTATGAAGAAGCTAGAGAGTCACCAAAAC
GCGTTTTTCCCGCAGATAATGACGATGATAGTATTCTAAAACCCGTTCCT
AATAACAATGACAATTTTCCGAAACAAGGTTCTCCCGCGGGTAAGAAACA
TGATAGTTTAACGAAAAATGAGAAACGCGTTTTAAACGAGGATGATGACA
ATGTATCCAAATCCCCTCCACGTAAATTACAGCGAAGAAATGAAAATGAT
TAGTATAATCGGTGCACCTGAGCAAAAAGAATGGCCAGAAAAATCTTCTT
TACCATGGAAAAACTTCATGAATTGCAAAGGGATCAATCTGCGTCACCTT
GTCCCTGACATTAGCTCCGAAGGATTGAGTCTTTTAAAGGCCTCTTTTCC
CTGGCAAGAGTGACGTTGATCAACTACAAAAAGTTATAAAGTGGTGACAT
TATGGTACAGATCTCCCGAGCTTCTCTTGCAATGTCCTTATGCTACATTA
GTCGACCTGTGGAGTGTGGGTGCTATCATGGCAGAAATGTACAATCGAAG
ATGTACCAAATGTTGTCTGGCCTCGATTACCTACACATCAACAGATTGAT
TCACAGAGATATCAAGCCTCAAAATATCCTTATCACTAAAAATAAGCAAG
TCAAAATAGCAGATTTTGGGCTTGCTAGGGTTTACGGTTTCTGTAAACTA
ATCACATCTGTGGGTCTTTTGGTGTTTGATCCAAGCAAACGTTTTAATGC
ACAACAAAGTTTAGCGCATCCCTATTTTGACGATATCGATAGAGGAGATA
GTCAAGACTCTGGGATCTCTTCACAAATCTTAAGCGAAGCAGAACAAATT
GAAGAAGCCAAGAAGTCTATACTATCTTTATCGAGTAGTGAGACTGTGGA
TTCTGGAGTGAGTAGCATCTACGACTCGTCAGCACATAGTGACTATAGAT
CTCTCTCAAGAACAGACTCAGGTATTTGTGTATCACCTACACTTTCGAAT
GGGAACGTTTCGAATGCTGATCTTCACGATTGTTGCTCCACCTCTTCCTT
AAACGATTGTATCAATAATCACACGTCGTATGAAGAAGCTAGAGAGTCAC
CAAAACGCGTTTTTCCCGCAGATAATGACGATGATAGTATTCTAAAACCC
GTTCCTAATAACAATGACAATTTTCCGAAACAAGGTTCTCCCGCGGGTAA
GAAACATGATAGTTTAACGAAAAATGAGAAACGCGTTTTAAACGAGGATG
ATGACAATGTATCCAAATCCCCTCCACGTAAATTACAGCGAAGAAATGAA
AATGATTAGTATAATCGGTGCACCTGAGCAAAAAGAATGGCCAGAAAAAT
CTTCTTTACCATGGAAAAACTTCATGAATTGCAAAGGGATCAATCTGCGT
CACCTTGTCCCTGACATTAGCTCCGAAGGATTGAGTCTTTTAAAGGCCTC
TTTTCCCTGGCAAGAGTGACGTTGATCAACTACAAAAAGTTATAAAGTGG
TGACATTATGGTACAGATCTCCCGAGCTTCTCTTGCAATGTCCTTATGCT
ACATTAGTCGACCTGTGGAGTGTGGGTGCTATCATGGCAGAAATGTACAA
TCGAAGATGTACCAAATGTTGTCTGGCCTCGATTACCTACACATCAACAG
ATTGATTCACAGAGATATCAAGCCTCAAAATATCCTTATCACTAAAAATA
AGCAAGTCAAAATAGCAGATTTTGGGCTTGCTAGGGTTTACGGTTTCTGT
AAACTAATCACATCTGTGGGTCTTTTGGTGTTTGATCCAAGCAAACGTTT
TAATGCACAACAAAGTTTAGCGCATCCCTATTTTGACGATATCGATAGAG
GAGATAGTCAAGACTCTGGGATCTCTTCACAAATCTTAAGCGAAGCAGAA
CAAATTGAAGAAGCCAAGAAGTCTATACTATCTTTATCGAGTAGTGAGAC
TGTGGATTCTGGAGTGAGTAGCATCTACGACTCGTCAGCACATAGTGACT
ATAGATCTCTCTCAAGAACAGACTCAGGTATTTGTGTATCACCTACACTT
TCGAATGGGAACGTTTCGAATGCTGATCTTCACGATTGTTGCTCCACCTC
TTCCTTAAACGATTGTATCAATAATCACACGTCGTATGAAGAAGCTAGAG
AGTCACCAAAACGCGTTTTTCCCGCAGATAATGACGATGATAGTATTCTA
AAACCCGTTCCTAATAACAATGACAATTTTCCGAAACAAGGTTCTCCCGC
GGGTAAGAAACATGATAGTTTAACGAAAAATGAGAAACGCGTTTTAAACG
AGGATGATGACAATGTATCCAAATCCCCTCCACGTAAATTACAGCGAAGA
AATGAAAATGATTAGTATAATCGGTGCACCTGAGCAAAAAGAATGGCCAG
AAAAATCTTCTTTACCATGGAAAAACTTCATGAATTGCAAAGGGATCAAT
CTGCGTCACCTTGTCCCTGACATTAGCTCCGAAGGATTGAGTCTTTTAAA
GGCCTCTTTTCCCTGGCAAGAGTGACGTTGATCAACTACAAAAAGTTATA
AAGTGGTGACATTATGGTACAGATCTCCCGAGCTTCTCTTGCAATGTCCT
TATGCTACATTAGTCGACCTGTGGAGTGTGGGTGCTATCATGGCAGAAAT
GTACAATCGAAGATGTACCAAATGTTGTCTGGCCTCGATTACCTACACAT
CAACAGATTGATTCACAGAGATATCAAGCCTCAAAATATCCTTATCACTA
AAAATAAGCAAGTCAAAATAGCAGATTTTGGGCTTGCTAGGGTTTACGGT
TTCTGTAAACTAATCACATCTGTGGGTCTTTTGGTGTTTGATCCAAGCAA
ACGTTTTAATGCACAACAAAGTTTAGCGCATCCCTATTTTGACGATATCG
ATAGAGGAGATAGTCAAGACTCTGGGATCTCTTCACAAATCTTAAGCGAA
GCAGAACAAATTGAAGAAGCCAAGAAGTCTATACTATCTTTATCGAGTAG
TGAGACTGTGGATTCTGGAGTGAGTAGCATCTACGACTCGTCAGCACATA
GTGACTATAGATCTCTCTCAAGAACAGACTCAGGTATTTGTGTATCACCT
ACACTTTCGAATGGGAACGTTTCGAATGCTGATCTTCACGATTGTTGCTC
CACCTCTTCCTTAAACGATTGTATCAATAATCACACGTCGTATGAAGAAG
CTAGAGAGTCACCAAAACGCGTTTTTCCCGCAGATAATGACGATGATAGT
ATTCTAAAACCCGTTCCTAATAACAATGACAATTTTCCGAAACAAGGTTC
TCCCGCGGGTAAGAAACATGATAGTTTAACGAAAAATGAGAAACGCGTTT
TAAACGAGGATGATGACAATGTATCCAAATCCCCTCCACGTAAATTACAG
CGAAGAAATGAAAATGATTAGTATAATCGGTGCACCTGAGCAAAAAGAAT
GGCCAGAAAAATCTTCTTTACCATGGAAAAACTTCATGAATTGCAAAGGG
ATCAATCTGCGTCACCTTGTCCCTGACATTAGCTCCGAAGGATTGAGTCT
TTTAAAGGCCTCTTTTCCCTGGCAAGAGTGACGTTGATCAACTACAAAAA
GTTATAAAGTGGTGACATTATGGTACAGATCTCCCGAGCTTCTCTTGCAA
TGTCCTTATGCTACATTAGTCGACCTGTGGAGTGTGGGTGCTATCATGGC
AGAAATGTACAATCGAAGATGTACCAAATGTTGTCTGGCCTCGATTACCT
ACACATCAACAGATTGATTCACAGAGATATCAAGCCTCAAAATATCCTTA
TCACTAAAAATAAGCAAGTCAAAATAGCAGATTTTGGGCTTGCTAGGGTT
TACGGTTTCTGTAAACTAATCACATCTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009981XLOC_009981Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017806-exon-sc0000276-1575043694:271744..272026TCONS_00017806-exon-sc0000276-1575043694:271744..272026Clytia hemisphaericaexon
TCONS_00017806-exon-sc0000276-1575043694:271276..271385TCONS_00017806-exon-sc0000276-1575043694:271276..271385Clytia hemisphaericaexon
TCONS_00017806-exon-sc0000276-1575043694:268956..269006TCONS_00017806-exon-sc0000276-1575043694:268956..269006Clytia hemisphaericaexon
TCONS_00017806-exon-sc0000276-1575043694:268294..268429TCONS_00017806-exon-sc0000276-1575043694:268294..268429Clytia hemisphaericaexon
TCONS_00017806-exon-sc0000276-1575043694:266842..267946TCONS_00017806-exon-sc0000276-1575043694:266842..267946Clytia hemisphaericaexon
TCONS_00017806-exon-sc0000276-1510915933:271744..272026TCONS_00017806-exon-sc0000276-1510915933:271744..272026Clytia hemisphaericaexon
TCONS_00017806-exon-sc0000276-1510915933:271276..271385TCONS_00017806-exon-sc0000276-1510915933:271276..271385Clytia hemisphaericaexon
TCONS_00017806-exon-sc0000276-1510915933:268956..269006TCONS_00017806-exon-sc0000276-1510915933:268956..269006Clytia hemisphaericaexon
TCONS_00017806-exon-sc0000276-1510915933:268294..268429TCONS_00017806-exon-sc0000276-1510915933:268294..268429Clytia hemisphaericaexon
TCONS_00017806-exon-sc0000276-1510915933:266842..267946TCONS_00017806-exon-sc0000276-1510915933:266842..267946Clytia hemisphaericaexon
TCONS_00017806-exon-sc0000276-1491911889:271744..272026TCONS_00017806-exon-sc0000276-1491911889:271744..272026Clytia hemisphaericaexon
TCONS_00017806-exon-sc0000276-1491911889:271276..271385TCONS_00017806-exon-sc0000276-1491911889:271276..271385Clytia hemisphaericaexon
TCONS_00017806-exon-sc0000276-1491911889:268956..269006TCONS_00017806-exon-sc0000276-1491911889:268956..269006Clytia hemisphaericaexon
TCONS_00017806-exon-sc0000276-1491911889:268294..268429TCONS_00017806-exon-sc0000276-1491911889:268294..268429Clytia hemisphaericaexon
TCONS_00017806-exon-sc0000276-1491911889:266842..267946TCONS_00017806-exon-sc0000276-1491911889:266842..267946Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017806-proteinTCONS_00017806-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000276supercontigsc0000276:266842..272026 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.469	21.7817	7.56164	5.865	63.901	47.3739	44.6625	48.3566	51.3243	41.5543	44.4872	41.7588	46.3212	46.469	46.9788	45.2989	42.1584	44.6821	13.9846	15.9183	42.9704	42.2904	31.1128	30.3768	39.5126	44.1374	19.1676	14.7304	16.5749	18.7536
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR008271Ser/Thr_kinase_AS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00017806 vs. Swiss-Prot (Human)
Match: CDK6 (Cyclin-dependent kinase 6 OS=Homo sapiens GN=CDK6 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 7.050e-64
Identity = 99/184 (53.80%), Postives = 137/184 (74.46%), Query Frame = 2 
Query:  110 LQDLMYQMLSGLDYLHINRLIHRDIKPQNILITKNKQVKIADFGLARVYGFCKLITSVVVTLWYRSPELLLQCPYATLVDLWSVGAIMAEMYNRRPLFPGKSDVDQLQKVINIIGAPEQKEWPEKSSLPWKNFMNCKGINLRHLVPDIXXXXXXXXXXXXVFDPSKRFNAQQSLAHPYFDDIDR 661
            ++D+M+Q+L GLD+LH +R++HRD+KPQNIL+T + Q+K+ADFGLAR+Y F   +TSVVVTLWYR+PE+LLQ  YAT VDLWSVG I AEM+ R+PLF G SDVDQL K++++IG P +++WP   +LP + F +     +   V DI   G  LL   L F+P+KR +A  +L+HPYF D++R
Sbjct:  122 IKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLER 305
The following BLAST results are available for this feature:
BLAST of TCONS_00017806 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDK67.050e-6453.80Cyclin-dependent kinase 6 OS=Homo sapiens GN=CDK6 ... [more]
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