TCONS_00017811 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017811
Unique NameTCONS_00017811
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1692

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017811 ID=TCONS_00017811|Name=TCONS_00017811|organism=Clytia hemisphaerica|type=transcript|length=1692bp
TGGAAATAGTACACCAAAGTTAAAGAGCTCACACGATAAACTTGAATTAA
CATAGCTGAATGCAGGTTTtggacattaaaaataaatactgAAAGCTTAT
TGGTTGAATTGGATTAGAAAGCTTCCTATTGGCTTACAAcatgaaaattc
aaataaaaataaacaaaactagCTAGAAGAATCCAAAATTCTGCAATTCA
TGTGGAAAAACTTGCAAATTCAAGGTGATGGAGGATGGAAGAGGATATAG
TCGAAGATGCCAATCATGTCCTTGGAGGAATTAATAATTATCTGAATCAG
CTCAGTAGATACCATGAGGACCAACGCAACGATCAGTTTTATACTCGCTT
ATCTTTAGCAGAAGCCCACCTAGATAGAATTAAAGATATTATTGCAAGCG
ACAAATATGAAGAAACACAAGACAAAATAAATGGACTGAAAGTCAGGAGG
GATGTTCAAGAACACGAGGAACAAGCTAACCCACTTCGAAAAACAAGAAG
TTCCCGACCTGGAAATAGAAGATATGAAATTGATGGAGATCATTTGGAAC
AACTCCTTTCCATGGGTTGCTCGATTGTAACAATTGCTAAGGATGGCTTA
CTTGGGGCCCAGATACATCCTAATACAATTCACAGATTTATTAAAGCAAA
TGGAATCAAATCTGTTCGAGCACGATATTCTGACCTTTCAGATGATGAAT
TGAAAGAAGTAATTAAAGGCCTGAACAAGACCTACCCCAATTCAGGAATT
CGCCAAATACAGTCAATGCTTAAAGTTTTAAATCCTCCGCTCAGAATACA
AAGAGATCGTGTTGCCAAAATTCTGGCTGAAGTAGATCCTATTGGTGCAA
CGATGCGCTGGACACAGGTCATTCCTCGAAGAGTCTACAAAGTTCCAACA
CCAAACTCGTTATGGCACATCGATACCCACCATAAACTAATTAGATGGAA
TTTCGTCACAAATGGATGTGTGGATGGTTTCAGCCGCCTAATTGTCATTT
TACAAGTTCATACTGACAACCGTGCCTCTTCAATGCTGTGTGATTTTGTT
GGAGCTTTAAATAAACATGGCATTCCTAGCCGAGTTCGAGCGGACAAAGG
AGGAGAATTTGTACACATAAATAAATTGATGGATGAACTGAATGGCGAAG
CTCGTTCCAGTTTTATGAAAGGGAAATCAGTACACAACGTTAGAATTGAG
CGTCTTTGGCGTGATATATATTCTAAAGTTATAGGAAAATATCATGACAC
CTTTACAATGATGGAAGAAAATGATATACTCGATATTGACAACGATATTC
ATTTATCATGTTTGCATTATACGTATGGAAGACGCATTCAAAGGGAtctt
gatttttggaaaaatgcaTACAACAATCATCCATTAAGAACCGAGAAAAA
TCGCACACCTTGTCAACTTTGGTTTAATGCTAGTATGCGGTGCAGTGAAC
AAAATAACACTGCAATGGAAAATCTGTTTCGCCGAAACCCAGAGGATTAT
GAGGATATCATATCGAGGTACCGGAATGCAGAGAATATACCTGAACCAGA
GACAATTAGTATGGTTTTACCTCGTATTCAGCTACCTCTTTCCATTGAAA
AGAAGCAACAGCTTGATCGGACTATTGATGTTTTGCGTCAAAGTGACTCT
AACGGTTTAGATATTTACGGTGATGTAATGAGATTTGTTTTT
Run BLAST on NCBI

protein sequence of TCONS_00017811-protein

>TCONS_00017811-protein ID=TCONS_00017811-protein|Name=TCONS_00017811-protein|organism=Clytia hemisphaerica|type=polypeptide|length=486bp
MEEDIVEDANHVLGGINNYLNQLSRYHEDQRNDQFYTRLSLAEAHLDRIK
DIIASDKYEETQDKINGLKVRRDVQEHEEQANPLRKTRSSRPGNRRYEID
GDHLEQLLSMGCSIVTIAKDGLLGAQIHPNTIHRFIKANGIKSVRARYSD
LSDDELKEVIKGLNKTYPNSGIRQIQSMLKVLNPPLRIQRDRVAKILAEV
DPIGATMRWTQVIPRRVYKVPTPNSLWHIDTHHKLIRWNFVTNGCVDGFS
RLIVILQVHTDNRASSMLCDFVGALNKHGIPSRVRADKGGEFVHINKLMD
ELNGEARSSFMKGKSVHNVRIERLWRDIYSKVIGKYHDTFTMMEENDILD
IDNDIHLSCLHYTYGRRIQRDLDFWKNAYNNHPLRTEKNRTPCQLWFNAS
MRCSEQNNTAMENLFRRNPEDYEDIISRYRNAENIPEPETISMVLPRIQL
PLSIEKKQQLDRTIDVLRQSDSNGLDIYGDVMRFVF
Run BLAST on NCBI

transcript from alignment at sc0000276:369490..371891-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017811 ID=TCONS_00017811|Name=TCONS_00017811|organism=Clytia hemisphaerica|type=transcript|length=2402bp|location=Sequence derived from alignment at sc0000276:369490..371891- (Clytia hemisphaerica)
TGGAAATAGTACACCAAAGTTAAAGAGCTCACACGATAAACTTGAATTAA
CATAGCTGAATGCAGGTTTTGGACATTAAAAATAAATACTGAAAGCTTAT
TGGTTGAATTGGATTAGAAAGCTTCCTATTGGCTTACAACATGAAAATTC
AAATAAAAATAAACAAAACTAGCTAGAAGAATCCAAAATTCTGCAATTCA
TGTGGAAAAACTTGCAAATTCAAGGTGATGGAGGATGGAAGAGGATATAG
TCGAAGATGCCAATCATGTCCTTGGAGGAATTAATAATTATCTGAATCAG
CTCAGTAGATACCATGAGGACCAACGCAACGATCAGTTTTATACTCGCTT
ATCTTTAGCAGAAGCCCACCTAGATAGAATTAAAGATATTATTGCAAGCG
ACAAATATGAAGAAACACAAGACAAAATAAATGGACTGAAAGTCAGGAGG
GATGTTCAAGAACACGAGGAACAAGCTAACCCACTTCGAAAAACAAGAAG
TTCCCGACCTGGAAATAGAAGATATGAAATTGATGGAGATCATTTGGAAC
AACTCCTTTCCATGGGTTGCTCGATTGTAACAATTGCTAAGGATGGCTTA
CTTGGGGCCCAGATACATCCTAATACAATTCACAGATTTATTAAAGCAAA
TGGAATCAAATCTGTTCGAGCACGATATTCTGACCTTTCAGATGATGAAT
TGAAAGAAGTAATTAAAGGCCTGAACAAGACCTACCCCAATTCAGGAATT
CGCCAAATACAGTCAATGCTTAAAGTTTTAAATCCTCCGCTCAGAATACA
AAGAGATCGTGTTGCCAAAATTCTGGCTGAAGTAGATCCTATTGGTGCAA
CGATGCGCTGGACACAGGTCATTCCTCGAAGAGTCTACAAAGTTCCAACA
CCAAACTCGTTATGGCACATCGATACCCACCATAAACTAATTAGGTAGGT
AGATACATTTTATCAATCAAAATGGGTAACTTTTTTATCATAGGGTTTTT
ATTTTTTATCGCAAGCAGAAACATTCACGATTTTTTCCTTTTTCCATTTT
AGCCTTATTTGCAAAAGTTTTTATATGATACCGTGAGATCGGGTAACTTC
CATCAGTGGAGGCTTCGGCTAACATGCATAGCCCTCAAAATACAAAGTTA
AATCAAAACAAAAATGGTAGAGTAAAGCTGCAGGCGGAGCTGCGTAGTTT
TATTTTAATGACCAGATAGGTCATTCATTTGAGGCTATGCATGTTTGCCT
CCACTGATGCAAGTTAGCCTATCTCACGGTATGTCTTTGAAAAATTTTAC
TATGGCAATTCGCAAAAGTTTATTTACTTGCAAAAAATTCTTAACTAAAA
TTTCTTTTTTAAAATCAAAATAGAAAATAGTATTTATATCATGGCTTTTC
TAGCCCTTAAAAGCCTCAAAAATTTCCATTTTGCGGAACTAATTTTCGTG
TTTGACACCCAGTTTTTGGCAAAATTCTTTCATTTTCCTAGGGATTTTTG
TAACTTCTAGAAAAAATTGCATTTTGTTGAACTAATTTTCACGCTTAACA
CCCGTAAACTGATAAACGCAAAAATCAGTCCCCACAAAAATTAGTTTCCT
TAAGGTATTAGGCACGTCAAAAAAGTAAACAAATTTTAAATACTTTATTT
ATAGATGGAATTTCGTCACAAATGGATGTGTGGATGGTTTCAGCCGCCTA
ATTGTCATTTTACAAGTTCATACTGACAACCGTGCCTCTTCAATGCTGTG
TGATTTTGTTGGAGCTTTAAATAAACATGGCATTCCTAGCCGAGTTCGAG
CGGACAAAGGAGGAGAATTTGTACACATAAATAAATTGATGGATGAACTG
AATGGCGAAGCTCGTTCCAGTTTTATGAAAGGGAAATCAGTACACAACGT
TAGAATTGAGCGTCTTTGGCGTGATATATATTCTAAAGTTATAGGAAAAT
ATCATGACACCTTTACAATGATGGAAGAAAATGATATACTCGATATTGAC
AACGATATTCATTTATCATGTTTGCATTATACGTATGGAAGACGCATTCA
AAGGGATCTTGATTTTTGGAAAAATGCATACAACAATCATCCATTAAGAA
CCGAGAAAAATCGCACACCTTGTCAACTTTGGTTTAATGCTAGTATGCGG
TGCAGTGAACAAAATAACACTGCAATGGAAAATCTGTTTCGCCGAAACCC
AGAGGATTATGAGGATATCATATCGAGGTACCGGAATGCAGAGAATATAC
CTGAACCAGAGACAATTAGTATGGTTTTACCTCGTATTCAGCTACCTCTT
TCCATTGAAAAGAAGCAACAGCTTGATCGGACTATTGATGTTTTGCGTCA
AAGTGACTCTAACGGTTTAGATATTTACGGTGATGTAATGAGATTTGTTT
TT

Coding sequence (CDS) from alignment at sc0000276:369490..371891-

>TCONS_00017811 ID=TCONS_00017811|Name=TCONS_00017811|organism=Clytia hemisphaerica|type=CDS|length=2916bp|location=Sequence derived from alignment at sc0000276:369490..371891- (Clytia hemisphaerica)
ATGGAATTTCGTCACAAATGGATGTGTGGATGGTTTCAGCCGCCTAATTG
TCATTTTACAAGTTCATACTGACAACCGTGCCTCTTCAATGCTGTGTGAT
TTTGTTGGAGCTTTAAATAAACATGGCATTCCTAGCCGAGTTCGAGCGGA
CAAAGGAGGAGAATTTGTACACATAAATAAATTGATGGATGAACTGAATG
GCGAAGCTCGTTCCAGTTTTATGAAAGGGAAATCAGTACACAACGTTAGA
ATTGAGCGTCTTTGGCGTGATATATATTCTAAAGTTATAGGAAAATATCA
TGACACCTTTACAATGATGGAAGAAAATGATATACTCGATATTGACAACG
ATATTCATTTATCATGTTTGCATTATACGTATGGAAGACGCATTCAAAGG
GATCTTGATTTTTGGAAAAATGCATACAACAATCATCCATTAAGAACCGA
GAAAAATCGCACACCTTGTCAACTTTGGTTTAATGCTAGTATGCGGTGCA
GTGAACAAAATAACACTGCAATGGAAAATCTGTTTCGCCGAAACCCAGAG
GATTATGAGGATATCATATCGAGGTACCGGAATGCAGAGAATATACCTGA
ACCAGAGACAATTAGTATGGTTTTACCTCGTATTCAGCTACCTCTTTCCA
TTGAAAAGAAGCAACAGCTTGATCGGACTATTGATGTTTTGCGTCAAAGT
GACTCTAACGGTTTAGATATTTACGGTGATGTAATGAGATTTGTTTTTAT
GGAAGAGGATATAGTCGAAGATGCCAATCATGTCCTTGGAGGAATTAATA
ATTATCTGAATCAGCTCAGTAGATACCATGAGGACCAACGCAACGATCAG
TTTTATACTCGCTTATCTTTAGCAGAAGCCCACCTAGATAGAATTAAAGA
TATTATTGCAAGCGACAAATATGAAGAAACACAAGACAAAATAAATGGAC
TGAAAGTCAGGAGGGATGTTCAAGAACACGAGGAACAAGCTAACCCACTT
CGAAAAACAAGAAGTTCCCGACCTGGAAATAGAAGATATGAAATTGATGG
AGATCATTTGGAACAACTCCTTTCCATGGGTTGCTCGATTGTAACAATTG
CTAAGGATGGCTTACTTGGGGCCCAGATACATCCTAATACAATTCACAGA
TTTATTAAAGCAAATGGAATCAAATCTGTTCGAGCACGATATTCTGACCT
TTCAGATGATGAATTGAAAGAAGTAATTAAAGGCCTGAACAAGACCTACC
CCAATTCAGGAATTCGCCAAATACAGTCAATGCTTAAAGTTTTAAATCCT
CCGCTCAGAATACAAAGAGATCGTGTTGCCAAAATTCTGGCTGAAGTAGA
TCCTATTGGTGCAACGATGCGCTGGACACAGGTCATTCCTCGAAGAGTCT
ACAAAGTTCCAACACCAAACTCGTTATGGCACATCGATACCCACCATAAA
CTAATTAGATGGAATTTCGTCACAAATGGATGTGTGGATGGTTTCAGCCG
CCTAATTGTCATTTTACAAGTTCATACTGACAACCGTGCCTCTTCAATGC
TGTGTGATTTTGTTGGAGCTTTAAATAAACATGGCATTCCTAGCCGAGTT
CGAGCGGACAAAGGAGGAGAATTTGTACACATAAATAAATTGATGGATGA
ACTGAATGGCGAAGCTCGTTCCAGTTTTATGAAAGGGAAATCAGTACACA
ACGTTAGAATTGAGCGTCTTTGGCGTGATATATATTCTAAAGTTATAGGA
AAATATCATGACACCTTTACAATGATGGAAGAAAATGATATACTCGATAT
TGACAACGATATTCATTTATCATGTTTGCATTATACGTATGGAAGACGCA
TTCAAAGGGATCTTGATTTTTGGAAAAATGCATACAACAATCATCCATTA
AGAACCGAGAAAAATCGCACACCTTGTCAACTTTGGTTTAATGCTAGTAT
GCGGTGCAGTGAACAAAATAACACTGCAATGGAAAATCTGTTTCGCCGAA
ACCCAGAGGATTATGAGGATATCATATCGAGGTACCGGAATGCAGAGAAT
ATACCTGAACCAGAGACAATTAGTATGGTTTTACCTCGTATTCAGCTACC
TCTTTCCATTGAAAAGAAGCAACAGCTTGATCGGACTATTGATGTTTTGC
GTCAAAGTGACTCTAACGGTTTAGATATTTACGGTGATGTAATGAGATTT
GTTTTTATGGAAGAGGATATAGTCGAAGATGCCAATCATGTCCTTGGAGG
AATTAATAATTATCTGAATCAGCTCAGTAGATACCATGAGGACCAACGCA
ACGATCAGTTTTATACTCGCTTATCTTTAGCAGAAGCCCACCTAGATAGA
ATTAAAGATATTATTGCAAGCGACAAATATGAAGAAACACAAGACAAAAT
AAATGGACTGAAAGTCAGGAGGGATGTTCAAGAACACGAGGAACAAGCTA
ACCCACTTCGAAAAACAAGAAGTTCCCGACCTGGAAATAGAAGATATGAA
ATTGATGGAGATCATTTGGAACAACTCCTTTCCATGGGTTGCTCGATTGT
AACAATTGCTAAGGATGGCTTACTTGGGGCCCAGATACATCCTAATACAA
TTCACAGATTTATTAAAGCAAATGGAATCAAATCTGTTCGAGCACGATAT
TCTGACCTTTCAGATGATGAATTGAAAGAAGTAATTAAAGGCCTGAACAA
GACCTACCCCAATTCAGGAATTCGCCAAATACAGTCAATGCTTAAAGTTT
TAAATCCTCCGCTCAGAATACAAAGAGATCGTGTTGCCAAAATTCTGGCT
GAAGTAGATCCTATTGGTGCAACGATGCGCTGGACACAGGTCATTCCTCG
AAGAGTCTACAAAGTTCCAACACCAAACTCGTTATGGCACATCGATACCC
ACCATAAACTAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009985XLOC_009985Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017811-proteinTCONS_00017811-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017811-exon-sc0000276-1575043694:370948..371891TCONS_00017811-exon-sc0000276-1575043694:370948..371891Clytia hemisphaericaexon
TCONS_00017811-exon-sc0000276-1575043694:369490..370237TCONS_00017811-exon-sc0000276-1575043694:369490..370237Clytia hemisphaericaexon
TCONS_00017811-exon-sc0000276-1510915933:370948..371891TCONS_00017811-exon-sc0000276-1510915933:370948..371891Clytia hemisphaericaexon
TCONS_00017811-exon-sc0000276-1510915933:369490..370237TCONS_00017811-exon-sc0000276-1510915933:369490..370237Clytia hemisphaericaexon
TCONS_00017811-exon-sc0000276-1491911889:370948..371891TCONS_00017811-exon-sc0000276-1491911889:370948..371891Clytia hemisphaericaexon
TCONS_00017811-exon-sc0000276-1491911889:369490..370237TCONS_00017811-exon-sc0000276-1491911889:369490..370237Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000276supercontigsc0000276:369490..371891 -
Expression
No biomaterial libraries express this feature.
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017811 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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