TCONS_00017812 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017812
Unique NameTCONS_00017812
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017812 ID=TCONS_00017812|Name=TCONS_00017812|organism=Clytia hemisphaerica|type=transcript|length=381bp
ATGAAACATGTTGCATTTTGTGCCAGCATTACAGCCTTTTGGGGATTTAT
TACCATGTCTCAGTAACTTGGTACAGATTTTTGGATGCTTGAATCggcaa
aatttacattttcctTTCTTGTAAAAGTTACAAACTGGAGTTTCATCAGA
GACTTTGTCTTTGGTTGTAGTATTATCCAAAGATAAGGTTGTAGTATTAT
CTGAAGATAAGGTTGCGTCGTTTTGTAATTCGCGttgaaattttaggaaa
ttagtCCTACCCAGGTATATTCCATCGACTATCTTATTCGAGGGTCTGTC
GATAATAATATCTGGGGTGATTGGAATGTGAGGGAGTGTCCTTCTTGGAG
TGGGTTGGGTTCCATTTAAGAAAGATTCAGN
Run BLAST on NCBI

protein sequence of TCONS_00017812-protein

>TCONS_00017812-protein ID=TCONS_00017812-protein|Name=TCONS_00017812-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
XESFLNGTQPTPRRTLPHIPITPDIIIDRPSNKIVDGIYLGRTNFLKFQR
ELQNDATLSSDNTTTLSLDNTTTKDKVSDETPVCNFYKKGKCKFCRFKHP
KICTKLLRHGNKSPKGCNAGTKCNMFH
Run BLAST on NCBI

transcript from alignment at sc0000276:48025..48405

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017812 ID=TCONS_00017812|Name=TCONS_00017812|organism=Clytia hemisphaerica|type=transcript|length=381bp|location=Sequence derived from alignment at sc0000276:48025..48405 (Clytia hemisphaerica)
NCTGAATCTTTCTTAAATGGAACCCAACCCACTCCAAGAAGGACACTCCC
TCACATTCCAATCACCCCAGATATTATTATCGACAGACCCTCGAATAAGA
TAGTCGATGGAATATACCTGGGTAGGactaatttcctaaaatttcaaCGC
GAATTACAAAACGACGCAACCTTATCTTCAGATAATACTACAACCTTATC
TTTGGATAATACTACAACCAAAGACAAAGTCTCTGATGAAACTCCAGTTT
GTAACTTTTACAAGAAaggaaaatgtaaattttgccGATTCAAGCATCCA
AAAATCTGTACCAAGTTACTGAGACATGGTAATAAATCCCCAAAAGGCTG
TAATGCTGGCACAAAATGCAACATGTTTCAT

Coding sequence (CDS) from alignment at sc0000276:48025..48405

>TCONS_00017812 ID=TCONS_00017812|Name=TCONS_00017812|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at sc0000276:48025..48405 (Clytia hemisphaerica)
NCTGAATCTTTCTTAAATGGAACCCAACCCACTCCAAGAAGGACACTCCC
TCACATTCCAATCACCCCAGATATTATTATCGACAGACCCTCGAATAAGA
TAGTCGATGGAATATACCTGGGTAGGactaatttcctaaaatttcaaCGC
GAATTACAAAACGACGCAACCTTATCTTCAGATAATACTACAACCTTATC
TTTGGATAATACTACAACCAAAGACAAAGTCTCTGATGAAACTCCAGTTT
GTAACTTTTACAAGAAaggaaaatgtaaattttgccGATTCAAGCATCCA
AAAATCTGTACCAAGTTACTGAGACATGGTAATAAATCCCCAAAAGGCTG
TAATGCTGGCACAAAATGCAACATGTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009986XLOC_009986Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017812-exon-sc0000276-1491911889:48025..48405TCONS_00017812-exon-sc0000276-1491911889:48025..48405Clytia hemisphaericaexon
TCONS_00017812-exon-sc0000276-1510915933:48025..48405TCONS_00017812-exon-sc0000276-1510915933:48025..48405Clytia hemisphaericaexon
TCONS_00017812-exon-sc0000276-1575043694:48025..48405TCONS_00017812-exon-sc0000276-1575043694:48025..48405Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017812-proteinTCONS_00017812-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000276supercontigsc0000276:48025..48405 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.1891	3.78028	3.98783	1.26951	3.92272	0.698208	2.46444	0.60232	3.01807	4.56268	1.47695	3.92359	1.1583	1.72558	0.72503	0.693131	0.621349	1.33751	2.37701	0	2.82567	4.16736	1.12858	1.027	2.80718	1.1202	0.997464	0.816571	0	1.33166
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017812 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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