TCONS_00017817 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017817
Unique NameTCONS_00017817
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length944

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017817 ID=TCONS_00017817|Name=TCONS_00017817|organism=Clytia hemisphaerica|type=transcript|length=944bp
atttattttacacTTTACTGTAAGGTccattttgattctttttcaaCAGT
TTCCTTAACAACCACTAAACTATCTCaggatttttcaataaaaatgcaCG
ATCTAATATATTCTTGGTTTCTTAGAATTCGGTGAGATAATTCAAGAAAT
GTAATTGACGAGGTCCACGCCTATTTCCATGATCTTTCCAGTGATTTGTT
TAACCAGGTTGGTATTTCTACGCCATAATTTTATACCTTTTAGAACCATA
TTTAGTGTTTTAAATTGTTGTAAGTGTTCTCTTAGAAATTCTGCGCTTTC
TTCATCTAACACTTTTTCAGCTATCCTTCCATTGATATAGTCCATTGTCA
CATCCCAAGATACAGTCATTAAATTTGTTGCTTTACCACTGACCATTGAG
AGAACATTGTCAAATTTTTCGGGATCTTTACCAGTAATTTTTAAAACCTC
TTTGAGTACACTTCCAAGATCATATCCGATAACGAATAATTCCTGGCCAC
CAATTTCAAGCAAGGTTTTAAGATTTTCTCCAACAGTTTCtctccatatt
tcttttttctcttgtaTTGAAATACCACCACATAGTTTGACTTGATAAGT
CAATAATATTAGTGATACAGCTATTAAAGATTTGGTTATCATTTTGAATC
AATAACTTCGAGAATTCATGCTTCGAGTATaagcagggatatgttatagc
ggagctggataacgcacatttaaaaaagccttgttctatctctgtccctg
acattaaaatttgatatgaaatttaacttttttaNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcgtgaaatttggatt
tcctcttagccaatgattctgctgctgcatttatcgttcacgattaaaaa
cttttaattatcaagagggtctgtaaaacattggtgaatgacaa
Run BLAST on NCBI

protein sequence of TCONS_00017817-protein

>TCONS_00017817-protein ID=TCONS_00017817-protein|Name=TCONS_00017817-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MITKSLIAVSLILLTYQVKLCGGISIQEKKEIWRETVGENLKTLLEIGGQ
ELFVIGYDLGSVLKEVLKITGKDPEKFDNVLSMVSGKATNLMTVSWDVTM
DYINGRIAEKVLDEESAEFLREHLQQFKTLNMVLKGIKLWRRNTNLVKQI
TGKIMEIGVDLVNYIS
Run BLAST on NCBI

transcript from alignment at sc0000276:109431..110374

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017817 ID=TCONS_00017817|Name=TCONS_00017817|organism=Clytia hemisphaerica|type=transcript|length=944bp|location=Sequence derived from alignment at sc0000276:109431..110374 (Clytia hemisphaerica)
ttgtcattcaccaatgttttacagaccctcttgataattaaaagttttta
atcgtgaacgataaatgcagcagcagaatcattggctaagaggaaatcca
aatttcacgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNtaaaaaagttaaatttcatatcaaattttaatgtcaggga
cagagatagaacaaggcttttttaaatgtgcgttatccagctccgctata
acatatccctgcttATACTCGAAGCATGAATTCTCGAAGTTATTGATTCA
AAATGATAACCAAATCTTTAATAGCTGTATCACTAATATTATTGACTTAT
CAAGTCAAACTATGTGGTGGTATTTCAAtacaagagaaaaaagaaatatg
gagaGAAACTGTTGGAGAAAATCTTAAAACCTTGCTTGAAATTGGTGGCC
AGGAATTATTCGTTATCGGATATGATCTTGGAAGTGTACTCAAAGAGGTT
TTAAAAATTACTGGTAAAGATCCCGAAAAATTTGACAATGTTCTCTCAAT
GGTCAGTGGTAAAGCAACAAATTTAATGACTGTATCTTGGGATGTGACAA
TGGACTATATCAATGGAAGGATAGCTGAAAAAGTGTTAGATGAAGAAAGC
GCAGAATTTCTAAGAGAACACTTACAACAATTTAAAACACTAAATATGGT
TCTAAAAGGTATAAAATTATGGCGTAGAAATACCAACCTGGTTAAACAAA
TCACTGGAAAGATCATGGAAATAGGCGTGGACCTCGTCAATTACATTTCT
TGAATTATCTCACCGAATTCTAAGAAACCAAGAATATATTAGATCGtgca
tttttattgaaaaatcctGAGATAGTTTAGTGGTTGTTAAGGAAACTGtt
gaaaaagaatcaaaatggACCTTACAGTAAAgtgtaaaataaat

Coding sequence (CDS) from alignment at sc0000276:109431..110374

>TCONS_00017817 ID=TCONS_00017817|Name=TCONS_00017817|organism=Clytia hemisphaerica|type=CDS|length=501bp|location=Sequence derived from alignment at sc0000276:109431..110374 (Clytia hemisphaerica)
ATGATAACCAAATCTTTAATAGCTGTATCACTAATATTATTGACTTATCA
AGTCAAACTATGTGGTGGTATTTCAAtacaagagaaaaaagaaatatgga
gaGAAACTGTTGGAGAAAATCTTAAAACCTTGCTTGAAATTGGTGGCCAG
GAATTATTCGTTATCGGATATGATCTTGGAAGTGTACTCAAAGAGGTTTT
AAAAATTACTGGTAAAGATCCCGAAAAATTTGACAATGTTCTCTCAATGG
TCAGTGGTAAAGCAACAAATTTAATGACTGTATCTTGGGATGTGACAATG
GACTATATCAATGGAAGGATAGCTGAAAAAGTGTTAGATGAAGAAAGCGC
AGAATTTCTAAGAGAACACTTACAACAATTTAAAACACTAAATATGGTTC
TAAAAGGTATAAAATTATGGCGTAGAAATACCAACCTGGTTAAACAAATC
ACTGGAAAGATCATGGAAATAGGCGTGGACCTCGTCAATTACATTTCTTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009991XLOC_009991Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017817-proteinTCONS_00017817-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017817-exon-sc0000276-1491911889:109431..110374TCONS_00017817-exon-sc0000276-1491911889:109431..110374Clytia hemisphaericaexon
TCONS_00017817-exon-sc0000276-1510915933:109431..110374TCONS_00017817-exon-sc0000276-1510915933:109431..110374Clytia hemisphaericaexon
TCONS_00017817-exon-sc0000276-1575043694:109431..110374TCONS_00017817-exon-sc0000276-1575043694:109431..110374Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000276supercontigsc0000276:109431..110374 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.682662	0.871902	1.25939	1.67654	0.575407	0.374168	1.49149	2.4695	1.10321	0.877871	1.00903	1.7992	2.18281	1.79246	2.43071	1.89147	1.19187	2.43649	4.11812	2.82205	1.90941	1.28232	2.84545	3.36152	0.835075	2.24503	8.05247	8.05972	1.34361	0.510833
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017817 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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