TCONS_00017819 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017819
Unique NameTCONS_00017819
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017819 ID=TCONS_00017819|Name=TCONS_00017819|organism=Clytia hemisphaerica|type=transcript|length=322bp
NNATTCGTATTCTGCCAATTTATTTCTGATGCAATTTAATTTGGTTAGAT
GGAATGCACGGACTTGTAAATAGAAATGCACATTaaactttcatgttttt
aaTCGTTCGTTTCATCTCAAACGGAGGAAGTGTAGATTGGACTATagttt
atatacttttttatgAATTATGAATTAATAAGATATAATTTTATTCGTAT
GGATATATGCCTTGCTGTTGATTCTTAGTGGCTTTAAAAGTCATCAACGT
AGTTTCAAAGCTGACGGAATTTATTCATTGGGTGCGTAAATAAATCAAGA
AAAGAATGGCGCAAAAttgaat
Run BLAST on NCBI

transcript from alignment at sc0000276:180912..181233

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017819 ID=TCONS_00017819|Name=TCONS_00017819|organism=Clytia hemisphaerica|type=transcript|length=322bp|location=Sequence derived from alignment at sc0000276:180912..181233 (Clytia hemisphaerica)
attcaaTTTTGCGCCATTCTTTTCTTGATTTATTTACGCACCCAATGAAT
AAATTCCGTCAGCTTTGAAACTACGTTGATGACTTTTAAAGCCACTAAGA
ATCAACAGCAAGGCATATATCCATACGAATAAAATTATATCTTATTAATT
CATAATTcataaaaaagtatataaactATAGTCCAATCTACACTTCCTCC
GTTTGAGATGAAACGAACGAttaaaaacatgaaagtttAATGTGCATTTC
TATTTACAAGTCCGTGCATTCCATCTAACCAAATTAAATTGCATCAGAAA
TAAATTGGCAGAATACGAATNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009993XLOC_009993Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017819-exon-sc0000276-1491911889:180912..181233TCONS_00017819-exon-sc0000276-1491911889:180912..181233Clytia hemisphaericaexon
TCONS_00017819-exon-sc0000276-1510915933:180912..181233TCONS_00017819-exon-sc0000276-1510915933:180912..181233Clytia hemisphaericaexon
TCONS_00017819-exon-sc0000276-1575043694:180912..181233TCONS_00017819-exon-sc0000276-1575043694:180912..181233Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000276supercontigsc0000276:180912..181233 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.27866	3.06134	6.04267	3.12978	1.69342	0.334542	2.01805	3.4007	2.64545	0.983046	0	0	0.626361	0.216827	0.891307	1.91302	0.942673	0.483105	0	0.349212	2.1247	4.44151	2.1597	3.27246	0.337056	1.50407	1.29139	1.37821	1.74221	1.06502
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017819 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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