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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017827 ID=TCONS_00017827|Name=TCONS_00017827|organism=Clytia hemisphaerica|type=transcript|length=957bp
AGATGTTATCAATAAGAGTACTAGAGGTATCAGTGATCCGCGTTGGCAAG
GTAATAGTTGGTAGAATCTGGTAGGCACCAAGAATGTCAAGAAATTTGGA
GTGAGAAATCACAGAGTCACAAGTCAAAAGGTCTATGTTGAAATCGCCta
acaaaataagatttttattttcttgacaGGATTTTCTCAGCAAAGGTTTT
AAGAATTTATCATTGAAAAGGTCGATGTCTAAAAGGGGATGTTTGTAGAT
ACATCCAACAATGaagtttttcctattttttaagACGATTTCAACAAAGG
TTGATTCGAGATTACCACAGTCCGAGTGTACTATCTTTGAAAGATCTTTA
CGAGGTTTTTTGTTGAGAGAGTTCGAGACAAAAAGAGCAGTTCCCCCAAC
TGTTGAGACTGCAGGGGTATCAAAAGATTTGAAGCCGCTAATAGAAAGTT
CAGTGTTTTCGATAGACGATTTGAGTCTTGTTTCAGTGATACCGAGTATA
CTGAAATTATGATTGAGATTAGAAAGTAAAGTAGTAAGGTTATCACGATG
TTTTTCTAAAGAGCAGATATTGAGATGAaggcaagaaaaagtttgttttt
tgagAGGTAGAGAAGCAAATTCTTGAGTACTATGATATTTGCAGTCAAAA
TGATTAACATGATCATCAAAAGTAATATCGCCACGTTGTTCATCGATTTG
AGAATCGAAGTTAGAAAAAGAGTTTGAAATAGAATTTAGATGTctaaaat
atgattttaagtgGCTTATATCTTTACCAATGGGTAATTTTTCATTGGAT
TCGAAATTGGGTAGAGCATCATGCGTACAAAGTTTACAGAGCCAAATGTT
TTTTACGTATTTTGGTTCAACGCCTAAGCACCGTGCATGGGATCGTCTTT
TACACTTGGGGCAAGAATGAAAAGTTTTAGTAGTTATTTTTTTCGAGCAA
ACAGAGC Run BLAST on NCBI protein sequence of TCONS_00017827-protein >TCONS_00017827-protein ID=TCONS_00017827-protein|Name=TCONS_00017827-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
SVCSKKITTKTFHSCPKCKRRSHARCLGVEPKYVKNIWLCKLCTHDALPN
FESNEKLPIGKDISHLKSYFRHLNSISNSFSNFDSQIDEQRGDITFDDHV
NHFDCKYHSTQEFASLPLKKQTFSCLHLNICSLEKHRDNLTTLLSNLNHN
FSILGITETRLKSSIENTELSISGFKSFDTPAVSTVGGTALFVSNSLNKK
PRKDLSKIVHSDCGNLESTFVEIVLKNRKNFIVGCIYKHPLLDIDLFNDK
FLKPLLRKSCQENKNLILLGDFNIDLLTCDSVISHSKFLDILGAYQILPT
ITLPTRITDTSSTLIDNI Run BLAST on NCBI transcript from alignment at sc0000276:390876..391832 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017827 ID=TCONS_00017827|Name=TCONS_00017827|organism=Clytia hemisphaerica|type=transcript|length=957bp|location=Sequence derived from alignment at sc0000276:390876..391832 (Clytia hemisphaerica)
GCTCTGTTTGCTCGAAAAAAATAACTACTAAAACTTTTCATTCTTGCCCC
AAGTGTAAAAGACGATCCCATGCACGGTGCTTAGGCGTTGAACCAAAATA
CGTAAAAAACATTTGGCTCTGTAAACTTTGTACGCATGATGCTCTACCCA
ATTTCGAATCCAATGAAAAATTACCCATTGGTAAAGATATAAGCcactta
aaatcatattttagACATCTAAATTCTATTTCAAACTCTTTTTCTAACTT
CGATTCTCAAATCGATGAACAACGTGGCGATATTACTTTTGATGATCATG
TTAATCATTTTGACTGCAAATATCATAGTACTCAAGAATTTGCTTCTCTA
CCTctcaaaaaacaaactttttcttgcctTCATCTCAATATCTGCTCTTT
AGAAAAACATCGTGATAACCTTACTACTTTACTTTCTAATCTCAATCATA
ATTTCAGTATACTCGGTATCACTGAAACAAGACTCAAATCGTCTATCGAA
AACACTGAACTTTCTATTAGCGGCTTCAAATCTTTTGATACCCCTGCAGT
CTCAACAGTTGGGGGAACTGCTCTTTTTGTCTCGAACTCTCTCAACAAAA
AACCTCGTAAAGATCTTTCAAAGATAGTACACTCGGACTGTGGTAATCTC
GAATCAACCTTTGTTGAAATCGTcttaaaaaataggaaaaacttCATTGT
TGGATGTATCTACAAACATCCCCTTTTAGACATCGACCTTTTCAATGATA
AATTCTTAAAACCTTTGCTGAGAAAATCCtgtcaagaaaataaaaatctt
attttgttaGGCGATTTCAACATAGACCTTTTGACTTGTGACTCTGTGAT
TTCTCACTCCAAATTTCTTGACATTCTTGGTGCCTACCAGATTCTACCAA
CTATTACCTTGCCAACGCGGATCACTGATACCTCTAGTACTCTTATTGAT
AACATCT Coding sequence (CDS) from alignment at sc0000276:390876..391832 >TCONS_00017827 ID=TCONS_00017827|Name=TCONS_00017827|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at sc0000276:390876..391832 (Clytia hemisphaerica)
TCTGTTTGCTCGAAAAAAATAACTACTAAAACTTTTCATTCTTGCCCCAA
GTGTAAAAGACGATCCCATGCACGGTGCTTAGGCGTTGAACCAAAATACG
TAAAAAACATTTGGCTCTGTAAACTTTGTACGCATGATGCTCTACCCAAT
TTCGAATCCAATGAAAAATTACCCATTGGTAAAGATATAAGCcacttaaa
atcatattttagACATCTAAATTCTATTTCAAACTCTTTTTCTAACTTCG
ATTCTCAAATCGATGAACAACGTGGCGATATTACTTTTGATGATCATGTT
AATCATTTTGACTGCAAATATCATAGTACTCAAGAATTTGCTTCTCTACC
TctcaaaaaacaaactttttcttgcctTCATCTCAATATCTGCTCTTTAG
AAAAACATCGTGATAACCTTACTACTTTACTTTCTAATCTCAATCATAAT
TTCAGTATACTCGGTATCACTGAAACAAGACTCAAATCGTCTATCGAAAA
CACTGAACTTTCTATTAGCGGCTTCAAATCTTTTGATACCCCTGCAGTCT
CAACAGTTGGGGGAACTGCTCTTTTTGTCTCGAACTCTCTCAACAAAAAA
CCTCGTAAAGATCTTTCAAAGATAGTACACTCGGACTGTGGTAATCTCGA
ATCAACCTTTGTTGAAATCGTcttaaaaaataggaaaaacttCATTGTTG
GATGTATCTACAAACATCCCCTTTTAGACATCGACCTTTTCAATGATAAA
TTCTTAAAACCTTTGCTGAGAAAATCCtgtcaagaaaataaaaatcttat
tttgttaGGCGATTTCAACATAGACCTTTTGACTTGTGACTCTGTGATTT
CTCACTCCAAATTTCTTGACATTCTTGGTGCCTACCAGATTCTACCAACT
ATTACCTTGCCAACGCGGATCACTGATACCTCTAGTACTCTTATTGATAA
CATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017827-exon-sc0000276-1491911889:390876..391832 | TCONS_00017827-exon-sc0000276-1491911889:390876..391832 | Clytia hemisphaerica | exon |
| TCONS_00017827-exon-sc0000276-1510915933:390876..391832 | TCONS_00017827-exon-sc0000276-1510915933:390876..391832 | Clytia hemisphaerica | exon |
| TCONS_00017827-exon-sc0000276-1575043694:390876..391832 | TCONS_00017827-exon-sc0000276-1575043694:390876..391832 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000276 | supercontig | sc0000276:390876..391832 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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