TCONS_00017830 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017830
Unique NameTCONS_00017830
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1114

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017830 ID=TCONS_00017830|Name=TCONS_00017830|organism=Clytia hemisphaerica|type=transcript|length=1114bp
caaaaattttagaaactaaAAAGCTGTCATGTTCAAAAGTGTTTCTGTTA
AATCAGATTTCTATTAGCCAGACATCAACAACAACACCAGCTACAACACA
AACCACAACAAACATTCCACCTGGAGCGATTTGCCATCACAATTATACTA
TTCGTCATGATATGACCATTCCATCAAATTCAACCTGTCATTCATATTCA
GATtAAACGGACGATAGGGATTCCCATATTTGGGGAATATGAATATTTGG
CGCACAGGAAATGGTTCACAGTGATCCAGCATGGCGGCATTGTTTTTTTG
TATCATCCATGCATCAGCACAAACGAAAAGCAAAAACTTCAAATGGTTGC
ACGATCGTGCTTAAGAAGATATGTTTTAACTCCATCAGAAATTCTCAATG
TCGAAATGCCGATAGCTCTTGTATCATGGGGTTGTTTTCACGGAGCTTCG
CACGTCAATACCACCGCAATGAGAGCATGGTTACGCAACAACTCTTTCAA
TGCACGCTTCCATAATCTACAcactttgaaaagtgaaaatggTGGTGGGA
GATATAAGAAAAATCTGTTGCGGAAGTCGCTTGTTGTCACTGATGAGGTT
GACACAATTGTCTGCCCCACTGAACAAgaggtttgtacttttacttcAAA
GTTCGTGAAcccttttcaaaaagattttagtgTGTTTTCCTCTActacaa
aacttttcaaaaatgaaatctaGTGGGGAAGTGAAGAAGTGGGAAATGGA
ATTTTGTCTGAAATAGATGTTCTTCGGAACGAACGGATATAGCGGAATTA
GAAGTGCCCATCTTTCGTAAGGTTTTGAATGCTGCGCTAACATGAGAGAA
TTAACTATCTTTCTGCAACGTAACAAAAAGGTTGTAGCAAACATCTATGT
GCCTGAAACAAAATCTGTTTCAACATCGAActcttatttttatttgttct
tGTGATTGCAGACTCTAAAGGTTTAAAAGCAATGCAACAACCACAATATA
ATCGGCTGAAAAAGTTATCAGCTTGTTGCCCTAGCttaactacacgcttt
ttttatataagaatacactttataagaatgtccatgatgaaaatggccaa
aaaattaagaatat
Run BLAST on NCBI

protein sequence of TCONS_00017830-protein

>TCONS_00017830-protein ID=TCONS_00017830-protein|Name=TCONS_00017830-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MVARSCLRRYVLTPSEILNVEMPIALVSWGCFHGASHVNTTAMRAWLRNN
SFNARFHNLHTLKSENGGGRYKKNLLRKSLVVTDEVDTIVCPTEQEVCTF
TSKFVNPFQKDFSVFSSTTKLFKNEI
Run BLAST on NCBI

transcript from alignment at sc0000278:39454..56139+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017830 ID=TCONS_00017830|Name=TCONS_00017830|organism=Clytia hemisphaerica|type=transcript|length=16686bp|location=Sequence derived from alignment at sc0000278:39454..56139+ (Clytia hemisphaerica)
caaaaattttagaaactaaAAAGCTGTCATGTTCAAAAGTGTTTCTGTTA
AATCAGGTAAGTAATGTGTTTTCAAAGACATGAATGCTTCAGGCTCTAGT
AAGGGTACAGTAGCAAATTACCTTGTTTccgtgaaaattttcaaatgaaa
ttgaTTCTTCCTTCGTAAAAGGAAGGAAAATATTATACCAAATTATTCAA
ATAGTCCAGCCCAGCCCAGAtcattgaattgaattgaattgaataataTA
TTTACTACTCGGTTAGGTAGAGGGATCACCCCTAATAGAAACTTAATTCT
AATAAATTAAGTCTAATTAAATTAAGCAGAGCCAGATGCCAGAGGTACAT
GGTGTACCATGGCATGAACATGAACTCGGGTAACTGGCCTGGGTAACTTG
cttcagtcagggaaatccctcaattgcggtagtaatttcttactgcaatt
gcagtataaacatcacttttaaatttttcatgtgccgcaattgcagtata
ctcaagaaacagaattcaagattcaaggggggaaaacaggcaatttttgt
acataattgatcatatctttttttaacgcacagacaaaatattttttccg
tagatcagattcttttgataaagaaaagctATCTTCTCGTACAATTTTTT
ACAGTctatgtttgtttatctttgtcgaccagcactatTATGTAGctgtt
ataagcctttgtaggctatCACTATTGAAAACTaccagtgataaatcaat
ttagaatggaagccttgaccataaaatatagaccgTGTGGTGGAAATTCT
GTTAGAGACAGAAAGAAAGTGCAAAgtgatttttggagaaattttttttt
caaaatccaacccaaaacagcaatacaaaaaataagaattgaagcaaaat
aaagaagaattgaagcaaaataaagatacacctttagttctttacacaat
gcaaccaagtcattaagaagattaaaacaagaatatctaaggaagtaatt
gaaaagaaaacaaccagaacatctaaaaattggAAGAAGCTATATCGGAt
cgcccaaagttaccttcatgtACCAccacattttattttcttatccacgg
atcgctgatagtcaccccGGAGTCtgtgtttccgggggtttttttgtttg
gaattgattaactaacagtaacccatgttttgatcttcgcACTTCTTCCC
taacattatttttatttttatttggatgcgtggtcaaacacccaagggag
ataattagctattcttttgttatttgctttgaaaaagaaaaatcagggag
atttgcaaagcagcgtacGCGCCTTGCTGATCACCCGCGCGGTCCATCCA
AATACTTAGGCGaacacttcaagtcggctcgcataatttcttatacgcgc
gccaccattcagatctctgattcgcttggaccaaccaatcagaatatcca
cataatcatcctcagatgagaatgcagacaatctaggtaaaccagaccgt
aaacataagaaatatcaattaatcaagaaaaaagtttacgggctggatat
ccaggctacttgAGTCGGTGTAATTATGTTGCCGCCCAAAAAAACCTGAC
GATTTTACTGAATTTCCGAATCaggttttcttgtaaataaacagtCCGTT
GGACAACCCAAAcgcaacatatttttgattgtcgCCTAATAGAACTGGGA
gcagagctgataggttgaCGATATtctaaattatgttaaaaatctatgct
gtgggaAAGGTTTTATcctgtagcctggatatccagactgtaaactattt
catcgtctagttttttattatcttgtctctggtttacggtctggtccaac
taactcctctgcagggatatttgtccctgcatatgcgagtgtatcTGATT
GTTCGATTCGCTCcgagtcactgagcagaattttcgggggcttttcgata
tttttctatgcgcgcgcataatttatggaaaaaagctgacaatgcaaaat
aatataataaacaaacgaaaatgaaaacacaggttcattcctaaacaaaa
tggcctctggaatgtggctgatgttttgatgttgtttaaccctattcaac
ctaggcttttaggggtggttcagaactagggggggggtcttttcctgtac
caccccttaacttttgatctagtgggtctttttggatgaaatttggcaca
caagatccttgtcacataaggtaacttttgacaaaaattttttttgatga
cgtcactcatcatgcccaaagtgagcaaaaaccaaaaatttcctttgttc
ttataaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
aagtagttcgaaagttatttccaaaaaactgactttttttccatgtcgaa
atttaaaaaaatcattaaaaacagcaatcacgctataaataagacaaaat
gacaatagctcaatttcattgttttttttattcctttttcttccatgtta
tattttgccaacagtttctccatcttatttgcatgtcatgaacatttcca
accccagcaaactcaatgcagacccaagttctttgagcaactagtcgagg
aatggtgatctattttttcaaaagttttctcacataccgcacataacatc
aaaacatctcttggagatttccaaaaaaagtctttcagcctttccaaaaa
tattatcccatgtgggaatagcttgttttaccatattcttaaattcagTA
AAGAGTTTTCATGAGCGCAGttgtttttttggtatttttatgtgtaaaga
aggtaagtgtgAAGAAAAaggtttgctcgctgtttttgatgattttttga
aatttcgacatggaaaaaaagtcagttttttggaaataactttcgaacta
ctttttcaaaattaatgtatgatggctcaaaattcaagttagagcatcct
ctatacattaaaagaaaaatgaacaaaaaatttaaatcctgaagctcaca
atatctcgacaaagtcatatacttttttttggtgcacccggtatatattg
gaaaagtgtcaatttttgtgacaccttgctgtcagaaatgtcatcatgct
caaggtgtgaaaatttttaggtgtcaaatttttttttatttNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGGT
TCACTCACatacagtatcaaacaaactgtatcagacttttttagttgcac
cagactctaaaattttagaaactttgtatgatgAGGTaagagtttgtttt
tttttaattttgagtctggatacccaggctagttttatccctcttgaaaa
aaagttttgtccgTGGCCCAATAAATTTATCAAGAATTTGTatgtaaaat
ttctttgatattttgctttgtgaaggtggaggctatgtttctagaattta
gccaggggctattttccttagcTTCCCCCTGAAAAGTGCTtggggctgga
cccctctgcacactatgtagTAGTCttattcctttgaaaatacagaaATT
GGTATTTTTCCCTGGAAAAGTACATGCCAGCTGGAGTATCTTGAATACAC
AAGTATttcctgtttttgtttttgaaattacaAAGCTTGTTTTGAAAGga
ggtattttttagtgctctatacgatgatctgtatttttttgaattctatg
tttagatttttctatccagccccgttgctatgtacgtgcgccctgttgct
aagacttttgcttgaaattgaaattgaaaccaAAATGATTTCGCCGTTTG
CGTAATGTCGATAAAGTGAGAGGAGGTCCTGACTTATTACATTCGATTGT
ATTCAattatgttcgattacgttcaattgattcaatacaccgtttaacag
tctcgccatctccaccgtagaggcggtaggtaaaaatgctcactttagta
ctgtggaaggttagagaaatttaaacattgccattttttttctttccttt
aaagagaatgttttagatatttgaacatgatattaatgtcaattttatgt
atctctcctgaaaatttcactaaaattcatccagaggaaaagaagttatg
attaaaaggagttctttacctaccatttctctgctgggttttcttatgag
aactggatgtttacctaccattttttaNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCT
TAGCTTCCCCTGAAAAGTGCTtggggctggacccctctgcacactatgta
gTAGTCttattcctttgaaaatacagaaATTGTTATTTTTCCCTGGAAAA
GTACATGCCAGCTGGAGTATCTTGAATACACAAGTATttcctgtttttgt
ttttgaaattacaAAGCTTGTTtctccagacggtgtcaatcaaacaaatT
GAACGCCAAATCAATTGAACTTAAATGAACACACTCGAATAAGTGCAAtt
caattgtcgaacgcaatcgaatcgcaatcgaatattacacAGAATTTGcg
tttgattgtttcaattaccagtcagggcctccttggtcttttataacatt
agttcggatagaataaaattatacctgatcaacacaaccaaaccctctgt
cttgcgtttactctctccttcccaacaacttttgtttttagttatgtagg
ttttaaaatccacaagtaattaacctcttatagctttatctgaatataTC
TGGTTGAAAACTTCTGTCAGGTTCATTcggtacgttttttatccacgtgg
tggaCCGGTTTCCTGATTTCCCAATAataaaaaattggaactttcccgtc
gACGCAgttgggcgtaccgccatcgcgaaatatttttcgtgaaaatttac
cgtattctaatgctaatataatctagataggaaacaaataatAAATTTGA
TCCTTTAATTGtttgtatttctaaatttcacgataaaaagaactattaac
aaattattataaaaatacaaagcTGGTGGTTTTGTCCTCCATCTTAAAAA
TACATTTGATCATctcaattttcctttttgagAATACAGAAATTTTTATT
CTTCCTTGGAAAATTCACGAGTATCTCCTgttttcctttttaaaaatgca
aAGCTTGTTTTGCtccatttttgttatttttccctcggaaaatacatttt
tactttttaaattgatttggtttgtgaattttttcaagtttgttattttt
ttatttgactaatCATGCTTTTTTTCTATTCTAGACACTAGATAATGCTC
AAAGATGTGAGCGAAAGATCTCATAAATGAATGGTGTTTTCCTTGTCTGA
ATAGTTCTTTATTTCATGACATTTCATAAAATTAGCTTTGAATTTTTACC
ATATGTTCAGCCCAGGTCTAGGCTAGgtctaggtcccaggcaaaaaaaat
GAGGTTCCCCAAAGATTTAGGTCCCCCTTATATCAAAAGTATTTAAGCAG
CTCCCAGTTTTATACCTGTTTGAGCTAGTTCGATTAAAAAAGCAGTTCAA
TTAGTTTGACTAATCGGGCCTGGACCATTATCCCTTGTTCAGTTTTCTAA
ACTTgactttaaaaataatttgcacaACTTTCTGTCCAGGCTATGAAAGa
agcccccccagcggacccaaatttcacgcattcacgaaaaaaactttcgc
aattcacgcattcacgcaagtttttctcgaatttcacgcaaaaccaattt
tttgggaaatcggggaaattttcggaaaaaatcggggaaaatgccaaaaa
tagaggtcttgcacatttcgctaagttacgtaatttacgtaatttccgcc
attatggactaaaacgttcgatttgcataaaaaagtatgacaaggctgta
ttcgagatattattcgaccggatctggtcatgcacttgagaaaaacttaa
ctcagtagtgattttttcctgtagacctgactataaaacaccgtgtttgg
tagtgtcataagaagcccccaaatagaaagcgttacataatttttcaact
ttaatcacatgccatcacgcaaaatatttgattcttctagcttgtcacga
tcgtttagaaaaggtgaagcttctgcagttaacgtatcacgatagtaagt
gaaaagatatgcgccgcaggcgagtttttgtaataaaaatagcttaaaca
ttatcaaaaataggtcaaacaaactcgagtatgacacAATGATGCTTAGC
TCcggggtaaggaggcgcaaccatggtttacgcagagaggAAATTTTTGC
ATTTCTATCACTCGCGTTTGGCTAAAAATGCTCTCTTTAACACCATTGAA
Aaagaatgtagtctaaattcgttagaggcaaggtacgatcgcttgatagc
ttgtaaaatgaggtaaaagaatgaacatttgttgcgagcgaagcgatcaa
aaaaaatttaaaaagaaaggttttaatcaggcctcgcgaattaatttcct
aacgtggaggggccgaaaacatagtgactaaggaggcgcaaacatgtttt
gcgccgacaggagaaaatttctattttaaccctgTGATGTGCTTAAATAC
GACTCCATTTCAGACTAATTttgccaagaaatcaggttatcgaaagtcta
catcatgggtaaaaatttctttgaaataagtttctttttatttgcaaaaa
cgtggtgaagtcatgTCCGCCTCCTGCTCCCAGTGGCTCTGGCCCTGGCT
GGCCTtggccctggccctggatcactcatcatgcataaccatggttttaC
CTTTAACAAACACTTTCACACTTTCAAGGGGGCAAATTAGAGTTAAttaa
gattcgagggccaataaatgtttggcccgagcgaaaaaatctggaaattt
aaggtgtctagatcAGATgaaatggagtttttataagatactttaataat
tggtcatttgaagtaataaagatgacgcgttctttagaaaaagtaacaaa
attgttttattactgatttaacgaccaaccaaatcaaatgagagcttgta
aaaactccatctcgtcccgtctagattgctagaaagcgcatctaaatcat
gaatcgtttcataaaatagagaatttgaaagttgctgatttttttgtgca
ccttcacctggcatcccttgaattcaggataggtgcgcacctttgggttt
tctacaaactgtgaaaaggaaaaattcacgcgttcacgcatNGCAGAGGA
AATAAAACTGTGATTCTGGTGGTTAACTCGAGAAagtactttcaaaattt
caaaaagatcttGCAATTTTTCAATTACTCTGACAAAAATTGAGCActcc
aaattttgaaacatCTTTAACATCTGACTGGAGGTTCTAGgtcccccgcc
aaatttaggccccccctgagaacaaggtccctaagcctgataaaatttta
ggtcccagtataggggaaaaattttatggcattcacaaagctctatttac
ataaGTGTGCACTTTTATNcaagttttttcaattcacgcattcacgcaat
tttttttcgattttcacgcattcacgcaaccaaaaaagcccattcacaca
ttcacgcaaacTGCTGGGGGGCCCTTATAAGGATTTTGTTTGAACCAGTC
TATCATAGTAGTCTGACGATTGCGGTCGGAGGCGACCCTAGGGCTTATCC
TTTGATAGCTATATACCTAAGGTAGGGGTACCCAGAACACCTTCCGCACC
GTTTCACTACGGATCGCTTTCACAGTAAAACTTATTTATATGTTTGTACA
TTTCTGAAAAAGACAATAATTGCTACCATGGTAATTCGATATGCTTTTTA
TGATACTTTTTAATGCGACCATTCTTTAGGTATCGTGaacatttcatttt
taattctttccgatgaaaggaaaaattgattcatttaaatcattttcatt
ttagccGATCATCATTCGAGCTGCTCCACCAAATACAGTGACTACATCAA
CACTTGGCGTAAAACTGGTGCACAACACAACCAATAACACTGTGGCTTCG
CAACTCCAGCAACACAAACAGCAACCTCCCAAACCATCTCAGCCTCAAGT
CAAACTGAAAACAACACTAAGCACCCCTCAATTGCCAGCATATGCCAACA
AATACGTTCCAATCATGCCACGTGTAGCAACGACCACTCTCGCTACGCCC
TCTCTCGCTACACCCTCTCTCGCTACACCCTCTCTCGCTACGCCCTCTCT
CGCTACGCCCTCCAATACGATGTTACCGCCTGAAAAACACCGACTTCCCA
CCATCATGCCATGCGCACCAGCACCTCTCGCGACAACCTCCGGTAGACTT
TCGTCACATAAGACCCATACTACTTCTACTACCGTATCCAGCACCGCTGC
TGTGATGGAAGCCTTTCAAAAAGAAGCCATTGACGTTGCCAAGAAAGCCC
AAGAATCGGTGGAAATGCTTTTGGATAAACCCAAAGTCGCTGAACATCTG
AACGACTATCTGGCGGTTCTTAAAGGTAAGTTAGAAAAAATGGATGAAAA
CAAATTTAGTAGACCGACCTTCTAAGTTCCTTGAGACTACTTACTTTAAA
GAGAAGGGAAAAGCTGACTGACTTTCAGTAGTCGAAAGTTTCAAATAAGT
GGCTTTAGGTACATCCATTAAGTTGGAATTGTGCATTTAAAGATAACCCT
TAAAGTAGTCTTTCGGTGATCCTTCTTCACCTATGTTTCCGAGGCTAGGT
TCAGTCCAATAGTAtagttttatttgcttttttattttcacagtACAAGA
CTCACAGCCCGTCAAAGGAAAGAACACTATCAAATTTGAGCTCGCTTCAC
CCTTACAAAGTATCCAGGAGTTAACCGTGCCCAGTGCTTCTCTGCTTGTT
TTGATCTTAAAAAATGCACTAACAGCACCTATCCTCTCCTCTATTCCTGA
AAGGAATTTTACCCACCGCTATATAAATGGGTTACTTACTAAAGTGAATA
TATGTTGCAAAGTGATTGTGAAATCAATGGATCCAGCCACACCGGAGATT
TTAAGCGTCTTCAAGAATAAAGCATCGTGGTGGATGGCAATCATTGCTAA
CCTGACACCTGAAACTAAATATAAACTCCAGTCTGGCAATATCGGTCGAC
CACCAGGGATTGTCGATTTACCAAGAGATATTGAAACAGTTTTAGAAAAC
TTTATTCAAAGGAAACCAGTAGCCTTACCTGCAATTCAATATGCTTTAAG
AAATTTAACAATCGTCTCAATGACACTCGAATGTNccccccccccctgtt
gaggatatcggatatccagcaAGAGGTTCTGGGAGGTTtacgatttttgt
ttaaaagtggatatccagggggttgaatatttacaagggagcggatatcc
agggggtaaagtgtcttttcaagtaaaaaatacgctatccagggggtaag
catctttataagagaggatatccagggggttgaacatctttttagagtgg
atatccactttactaataaagtaggatatccagggacttcaatacttcaa
aaaatcaatatccttaACAGTCcgggtaaaatttttttctggaaaagccc
aatacgtGATATAGATTCTCCAAATTTCATGaaagtctctggaaatctat
caaaacactttaTAATTTGTTTTCGCACATACTGATGCTTACTAAGATCT
TGGCATTTACATTGCAGTTTTATTTCTTTAGATTTCTATTAGCCAGACAT
CAACAACAACACCAGCTACAACACAAACCACAACAAACATTCCACCTGGA
GCGATTTGCCATCACAATTATACTATTCGTCATGATATGGTATGCTAGGT
CTTCCAAAAACTTCCTAAACCTCTTGCTCTTTTATGGGAGAGTATATGAT
TGAAAATAACATccttcgttgaaaagataacttgGTTGAATTGATTTCAG
CCTAAAAGAATTTTCtaaacatttgaaaaagaaattgaataatgaagaaa
acaaatttctattttaccaaagattttcatttttataatttatttaaaaC
TCTCTCAAAACCCTTCTCAAATTTAAGGTTTAAGGTCTAAATCGGCGGCC
ATTCGGACGATTTTGTTTACTCATTTAAAAGTATAGTAAACAGCATTTCT
TCCTGTCATTTGATATTTCTAATTTAATGTTTAAGACCATTCCATCAAAT
TCAACCTGTCATTCATATTCAGATGTAAGTTTCATACTTTTCTTTCTAAT
TATAATATTGTAAAGTCGGCTGTTTTCTAAGCATTTAAAGTACTTAGGAT
ACAAGTAAAACTTCGTACAAGTGGTACTAAATGAATACATTATGTGCCAG
GTTACTCTGTACGAGAGTGTACGTATAtcacgtttatcgtttcgtaATAC
attctgtgcgcattgtctgtttgattcCCGTACGAAAACCTCtacgatga
agtatgatttataaatagcaacacttcttccatcgtctcccctctcattg
acactccatcgcagcagttgttttgaaaaatttcaaatcagaaaagacaa
CAGActctctacggcaatgaattctAAAATTAGCTGAAGAtatcgggttt
gtgtacagactagTGCCAGACAGGTCTAACCATTTTGGGTATTTCACATT
ATATAATCCTAAGGAATCATTGATTTATCTTTAAACTTGTCTTTGCCAAA
GTAGGGCTAGCACTACATTAGTAGCGTGAAATGTAGCTTCTGCAAAAAAA
TCCACATTTTTTGCTGTGGTTTCTAAATGTCACAACACAATTTTTCGACC
AAATTCTCATAATgttttttatcatttgaaaCAAGAGATGTTTAAGTTGA
AGTTAGCTCAGGTTAGCTATCAAAAGTAATATTATTACTTCTACTGCCAA
TTATATCGATACATGCCTTTTAataattgtaaaaaaataataaaaaaatg
attcCAGAAATGGATGATATTTTTCCTTCTTCATTTTGTGTCTTCATTCT
CACTTTTGACTGTTtcaaattattatatttttggacctacctggaggtcc
tataaattaacctctgtccgtccgttcgtccgttcgtccgtccgtctgtt
accagcttttctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNgggggggtcttcttacctaagggggtcttcttagataagga
ggatcttccttgaattatgcgaaatttcaatcgtttcatttatactgatt
ttctaaggggtggtatgaaattttaaatgaatttcctaagggggggttag
cacttaagggggggTGGGTCTTGATCATGGTTACATAAGGGAATGTTAAA
ATCCATGGAAAAGCTGATACAacatgaaaaaagataatattcTATTTTAA
CCGTTGAAAAGTTatcattatattttgtttttgtagtAAACGGACGATAG
GGATTCCCATATTTGGGGAATATGAATATTTGGCGCACAGGAAATGGTTC
ACAGTGATCCAGgtaaaagtttgtttgtttaaaaacaAGTTTCTCTATAC
GTCAACTTTATACAGATTACTTTAATGTCGTATATTTTCACGCTAAATAT
ACCTCATCCTTTTTATCAAACTCATAATCAACCCCTGTATGTTTTTTTAC
TTTAGCATGGCGGCATTGTTTTTTTGTATCATCCATGCATCAGCACAAAC
GAAAAGCAAAAACTTCAAATGGTTGCACGATCGTGCTTAAGAAGATATGT
TTTAACTCCATCAGAAATTCTCAATGTCGAAATGGTATATTAATAAATAA
TTTGTAGAATTTTCTTTTCTGCTCTAAAATATCCCAATCTATTCTTctca
atttttaaaacattaagGTCAATGTCAGCATGAAATTTCCAACTTTGAAG
ACGCATCTGCCATTTCTGGGTACTAAGTCAACCGAATTAGACAAAATTGC
CTCATTATGGAATAATGTGGAAATCAGTTTTGGTCAAAAAGGAACTTCAA
ATTTTCTAGTTTCTGTAGCTAAGGCTACACTAATGAGATTGTACAGGCAG
CAACAATGCAATTTACATTGCAGCACAAAAGACACGTGAGAAATTGCTCA
ATATACCTATACATAGGGCCCCTTACATAGAAGAGCTCATTCATTTCATT
CTGTTGATGTTTTTTCATGCTTTCATTTCATCTACGAAAATAACGTGAAA
AAGAGCAGCAAAGAGTAGTAACACGCACAAAAAGTCAGCGTGGTAATAAA
AGGGagaaggaaattttttcaatttttatgggGGAAGGAACCAACCTACC
AGGAATCTGTGTCGGAATCTTCAAATACACTGCAATGCAATAAAAAATGA
TGCAGAAAAATGCGATTTGTCCTtgcaattttgttttgtttctctaATAT
ATACTTTGTTTTGTTGGCTAGAATGCAACAATAGGCAATGGTCTGTAAGG
CTTAAAGGTCTGGGCCCACTTGAAACAAATTTCATCAAGACGAAACAGAA
ACAATTTGCAATCCAATTGCTAAACTTTGTATCAAGTGGCCAACCCGCCT
CAGAGAAatctcaacaaaaaatatttttgtcacgACGTAACaacaatgaa
aattttcttaagTCTTGgatgaattttttgaaacattttggacctaccgg
gaggtcctttaatttgaccgttgtccgttcgtctgttacaagcttttctc
gggattggctcattattatttttttttttttttgcacaatgatacaaaat
agcaatgcctgaaaagtgacggagcccgatttttgaaaaaaatttttggg
gggcaaatttgggccaaaaactacaaaggtaccctaaaatgtggcttaag
taatttttctcggaaaattttttttcgtcgtcaaatacggattttcgcaa
atttgggccaaaaactacctaaaaataaggttttttggacttggtgcaaa
attgcttcattagtttttcctgatttttgtcaNaaggttttttggacttg
gtgaaaAATTGCTtctttagtttttcctgatttttgtcagaaagatatag
tgcaaggtaccttaaaatgtggctgaagtaatttttctcggaaaattttt
tttcgtcgtaaaattttcaaaaaaagacgatcaagttacacaatgataaa
agaaaataaatcagacgtttttgcattgttctaaaacttattgtgtttgc
tcaataccaatagtaaaatgtatctgattttgatcaacaggcaggtccat
tcagcatgttgcttgtttttttgttgTATTCTTTTCGTCCTCGTTGGAGG
TGGCAACTTTTTCATCAcatcaaaatgaaatatttttttgcgtttcagtt
ttcaaatgtttttatttgatgaaaaatgtcaaaagtaTTATTCACAACTA
AATATAATATTTGAATGGCTTATTTTGTAGCCGATAGCTCTTGTATCATG
GGGTTGTTTTCACGGAGCTTCGCACGTCAATACCACCGCAATGAGAGCAT
GGTTACGCAACAACTCTTTCAATGCACGCTTCCATAATCTACAcactttg
aaaagtgaaaatggTGGTGGGAGATATAAGAAAAATCTGTTGCGGAAGTC
GCTTGTTGTCACTGATGAGGTTGACACAATTGTCTGCCCCACTGAACAAg
aggtttgtacttttacttcAAAGTTCGTGAAcccttttcaaaaagatttt
agtgTGTTTTCCTCTActacaaaacttttcaaaaatgaaatctaGTGGGG
AAGTGAAGAAGTGGGAAATGGAATTTTGTCTGAAATAGATGTTCTTCGGA
ACGAACGGATATAGCGGAATTAGAAGTGCCCATCTTTCGTAAGGTTTTGA
ATGCTGCGCTAACATGAGAGAATTAACTATCTTTCTGCAACGTAACAAAA
AGGTTGTAGCAAACATCTATGTGCCTGAAACAAAATCTGTTTCAACATCG
AActcttatttttatttgttcttGTGATTGCAGACTCTAAAGGTTTAAAA
GCAATGCAACAACCACAATATAATCGGCTGAAAAAGTTATCAGCTTGTTG
CCCTAGCttaactacacgctttttttatataagaatacactttataagaa
tgtccatgatgaaaatggccaaaaaattaagaatat

Coding sequence (CDS) from alignment at sc0000278:39454..56139+

>TCONS_00017830 ID=TCONS_00017830|Name=TCONS_00017830|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at sc0000278:39454..56139+ (Clytia hemisphaerica)
ATGGTTGCACGATCGTGCTTAAGAAGATATGTTTTAACTCCATCAGAAAT
TCTCAATGTCGAAATGCCGATAGCTCTTGTATCATGGGGTTGTTTTCACG
GAGCTTCGCACGTCAATACCACCGCAATGAGAGCATGGTTACGCAACAAC
TCTTTCAATGCACGCTTCCATAATCTACAcactttgaaaagtgaaaatgg
TGGTGGGAGATATAAGAAAAATCTGTTGCGGAAGTCGCTTGTTGTCACTG
ATGAGGTTGACACAATTGTCTGCCCCACTGAACAAgaggtttgtactttt
acttcAAAGTTCGTGAAcccttttcaaaaagattttagtgTGTTTTCCTC
TActacaaaacttttcaaaaatgaaatctaGATGGTTGCACGATCGTGCT
TAAGAAGATATGTTTTAACTCCATCAGAAATTCTCAATGTCGAAATGCCG
ATAGCTCTTGTATCATGGGGTTGTTTTCACGGAGCTTCGCACGTCAATAC
CACCGCAATGAGAGCATGGTTACGCAACAACTCTTTCAATGCACGCTTCC
ATAATCTACAcactttgaaaagtgaaaatggTGGTGGGAGATATAAGAAA
AATCTGTTGCGGAAGTCGCTTGTTGTCACTGATGAGGTTGACACAATTGT
CTGCCCCACTGAACAAgaggtttgtacttttacttcAAAGTTCGTGAAcc
cttttcaaaaagattttagtgTGTTTTCCTCTActacaaaacttttcaaa
aatgaaatctaG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010004XLOC_010004Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017830-proteinTCONS_00017830-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017830-exon-sc0000278-1491911889:39454..39509TCONS_00017830-exon-sc0000278-1491911889:39454..39509Clytia hemisphaericaexon
TCONS_00017830-exon-sc0000278-1510915933:39454..39509TCONS_00017830-exon-sc0000278-1510915933:39454..39509Clytia hemisphaericaexon
TCONS_00017830-exon-sc0000278-1575043694:39454..39509TCONS_00017830-exon-sc0000278-1575043694:39454..39509Clytia hemisphaericaexon
TCONS_00017830-exon-sc0000278-1491911889:49835..49942TCONS_00017830-exon-sc0000278-1491911889:49835..49942Clytia hemisphaericaexon
TCONS_00017830-exon-sc0000278-1510915933:49835..49942TCONS_00017830-exon-sc0000278-1510915933:49835..49942Clytia hemisphaericaexon
TCONS_00017830-exon-sc0000278-1575043694:49835..49942TCONS_00017830-exon-sc0000278-1575043694:49835..49942Clytia hemisphaericaexon
TCONS_00017830-exon-sc0000278-1491911889:50289..50327TCONS_00017830-exon-sc0000278-1491911889:50289..50327Clytia hemisphaericaexon
TCONS_00017830-exon-sc0000278-1510915933:50289..50327TCONS_00017830-exon-sc0000278-1510915933:50289..50327Clytia hemisphaericaexon
TCONS_00017830-exon-sc0000278-1575043694:50289..50327TCONS_00017830-exon-sc0000278-1575043694:50289..50327Clytia hemisphaericaexon
TCONS_00017830-exon-sc0000278-1491911889:53440..53515TCONS_00017830-exon-sc0000278-1491911889:53440..53515Clytia hemisphaericaexon
TCONS_00017830-exon-sc0000278-1510915933:53440..53515TCONS_00017830-exon-sc0000278-1510915933:53440..53515Clytia hemisphaericaexon
TCONS_00017830-exon-sc0000278-1575043694:53440..53515TCONS_00017830-exon-sc0000278-1575043694:53440..53515Clytia hemisphaericaexon
TCONS_00017830-exon-sc0000278-1491911889:53659..53787TCONS_00017830-exon-sc0000278-1491911889:53659..53787Clytia hemisphaericaexon
TCONS_00017830-exon-sc0000278-1510915933:53659..53787TCONS_00017830-exon-sc0000278-1510915933:53659..53787Clytia hemisphaericaexon
TCONS_00017830-exon-sc0000278-1575043694:53659..53787TCONS_00017830-exon-sc0000278-1575043694:53659..53787Clytia hemisphaericaexon
TCONS_00017830-exon-sc0000278-1491911889:55434..56139TCONS_00017830-exon-sc0000278-1491911889:55434..56139Clytia hemisphaericaexon
TCONS_00017830-exon-sc0000278-1510915933:55434..56139TCONS_00017830-exon-sc0000278-1510915933:55434..56139Clytia hemisphaericaexon
TCONS_00017830-exon-sc0000278-1575043694:55434..56139TCONS_00017830-exon-sc0000278-1575043694:55434..56139Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000278supercontigsc0000278:39454..56139 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.6146	16.9539	37.0521	35.8238	15.0668	11.573	12.332	11.3738	13.4503	14.336	11.138	10.4121	8.32764	7.94152	8.19749	9.02759	10.4985	9.81257	6.18412	6.77273	6.54296	7.96582	13.9193	14.4886	9.80903	9.70101	7.6462	5.11625	9.72316	11.6073
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017830 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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