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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017832 ID=TCONS_00017832|Name=TCONS_00017832|organism=Clytia hemisphaerica|type=transcript|length=4718bpRun BLAST on NCBI protein sequence of TCONS_00017832-protein >TCONS_00017832-protein ID=TCONS_00017832-protein|Name=TCONS_00017832-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1319bp MPGIVQDSVVSSEQNSPDPVGKKKLEVDSSLLKDDQETSSNGAEKAEENIRun BLAST on NCBI transcript from alignment at sc0000278:75607..90018+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017832 ID=TCONS_00017832|Name=TCONS_00017832|organism=Clytia hemisphaerica|type=transcript|length=14412bp|location=Sequence derived from alignment at sc0000278:75607..90018+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000278:75607..90018+ >TCONS_00017832 ID=TCONS_00017832|Name=TCONS_00017832|organism=Clytia hemisphaerica|type=CDS|length=114840bp|location=Sequence derived from alignment at sc0000278:75607..90018+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017832 vs. Swiss-Prot (Human)
Match: CLU (Clustered mitochondria protein homolog OS=Homo sapiens GN=CLUH PE=1 SV=2) HSP 1 Score: 1042.34 bits (2694), Expect = 0.000e+0 Identity = 527/1199 (43.95%), Postives = 772/1199 (64.39%), Query Frame = 2
Query: 335 ETLPVQLSNHDTVQDIRQIILEKPECCYRTCFSLYLEGTRLDDFMELHDIPGLSDNSVIKVVDEPYSIREARIHIRRLRDLLVTMLEPNAFTATDNLSLSYCSAITEVDVEEEAWKAMKDKNNYQKGNV-TLPPNFAGLKSKPSVEQIIIP----DYDVQLPTCLKDLRFSSWNPPPGYRKLAGDLLYLEVVTLDHPEHVYHITSSSNGFFVNRITNHLFDPRPANDSQRSQTLAGLLNMISPLFKKNFCSIQRTTIKKHPLELVSSPQQVFPWVSPQFEHTRDPFRAEDAVTNRIGYEEQIPGQLRDWNEELQSAKELPKKTRHQRTLRDRALYKITCDFIAAATRGAVAVVDGNVMAINPGEEEKMRMYIWNNIFFSFACDSRDHYQKYGGDEAAYTAASLDLKGVELYNKLDVEGLYTLGTVVVDYRGYRIIAQSIIPGILQREQENSVVYGSVDGGKTIATHEQFLEKLKTAGLSLKIRPHKVINEKDEDVELCSSIECKGIIGADGRHYILDLFRSFPPDVNFLDVEKVERTLINGEAIPETKKAKKDEFEFPVPHSQHLVSLRQAALEAFIGYKYVSFVKVIALNKLQDENKKDQNXXXXXXXXXXXXXXXXXXXXXMAAGCDKSTENDENSAEEIKTEGTVEAESDXXXXXXXXXXXXXXXXQSDIRAVEA---AATAIGSLSPQEFDIRFNPDAYVKEV-IPSNSEDEVAKKERLIMEDMSSFVCTTIIPKFIEDLANLSTTPIDGIALTDIMHTRGINMRYLGKIAHTCSK---KRNLSYVYGIAVKEMVLRAAKKQFKGCMQSANQRCLSAAVSHFLNCFLSSFPSPQPHLPXXXXXXXXXXXXRTQKLPHLPSNNNVAWMSLSPSFLWMAITKHVQQHFGFKIESSNIESFTQEYKVQKVSMLREICKKTGIQMLLKEYDFENRKHTTFSHEDILSIFPIVKSVTPRATDATTIFELAQTRLQSGFFGEAHELMIEALNMFNQVYGPLHPDIVVCYRAIARIHYLADDGAQAVAFQKKAVIVAERIYGVDHPETLVAYVHLALYCYHAGLVSASLKLMYRSRYLAILAYGEEHPDIATFDTNIGLMLHNQREFTTACQYLEHSCNLQMKFHGAESLHTATGHHLVARALSALGDYKKALNNEKSTHSIYQKHFGTEDARTKESGEALKTILNQAVMLQKTLKDIAEKG 3895
E +Q+S + VQ+I Q+++++ + C+RTCFSL+L+G LD F EL + GL + SV++VV+EPY++REARIH+R +RDLL ++ +AF D SLS+ S T+ D+ + K K + + PP + S+ E+ + P + D + CLK L S WNPPPG RK+ GDL+YL V+T + + IT+S+ GF++N+ T + F+P+PA+ S +L LLN ISP FKKNF +Q+ +++HP E +++P QV+ W +PQ EH D RAEDA T+R+GYEE IPGQ RDWNEELQ+ +ELP+K +R LR+RA++K+ DF AAATRGA+AV+DGNVMAINP EE KM+M+IWNNIFFS D RDHY+ +GGD AAY A + DL GV YN +DVEGLYTLGTVVVDYRGYR+ AQSIIPGIL+R+QE SV+YGS+D GKT+ +H ++LE L+ LKI H+V+N++DE+VELCSS+ECKGIIG DGRHYILDL R+FPPD+NFL V GE +PE FP H L LRQ ++AF+ ++Y+ F+K+ AL +Q + + ++ + + + + AG ++ + A+ + T+ A+ +D R+ E A A+GS+S FDIRFNPD + V P + +DEV + ++ +++D ++F+ + IP ++D + P+DG L ++M RGINMRYLGK+ + + L +V+ I + E++ R+AK FK +Q LSAA+SHFLNCFLSS+P+P HLP++E KK+NK+R + P + +N AW ++P LW I + + +F F +E ++ + Y +QK+++LREI KTGIQ+LLKEY F++R F+ ED+L+IFP+VK V P+A+DA F+ Q ++Q GF E EL+ EALN+FN VYG +H + C R +AR+HY+ D A+A++ Q+KAV+++ER+ G +HP T+ Y+HLALYC+ + +S +L L+YR+RYL +L +GE+HP++A D NIGL+LH E+ + ++LE++ + K+HG ++L A HHLVAR + +++ AL +EK ++IY+ G + +TKES E LK + QAV LQ+T+ +I G
Sbjct: 58 EPFSLQVSPQEMVQEIHQVLMDREDTCHRTCFSLHLDGNVLDHFSELRSVEGLQEGSVLRVVEEPYTVREARIHVRHVRDLLKSLDPSDAFNGVDCNSLSFLSVFTDGDLGDSG----KRKKGLEMDPIDCTPPEYILPGSR---ERPLCPLQPQNRDWKPLQCLKVLTMSGWNPPPGNRKMHGDLMYLFVITAE--DRQVSITASTRGFYLNQSTAYHFNPKPASPRFLSHSLVELLNQISPTFKKNFAVLQKKRVQRHPFERIATPFQVYSWTAPQAEHAMDCVRAEDAYTSRLGYEEHIPGQTRDWNEELQTTRELPRKNLPERLLRERAIFKVHSDFTAAATRGAMAVIDGNVMAINPSEETKMQMFIWNNIFFSLGFDVRDHYKDFGGDVAAYVAPTNDLNGVRTYNAVDVEGLYTLGTVVVDYRGYRVTAQSIIPGILERDQEQSVIYGSIDFGKTVVSHPRYLELLERTSRPLKILRHQVLNDRDEEVELCSSVECKGIIGNDGRHYILDLLRTFPPDLNFLPVP--------GEELPEECARAG----FPRAHRHKLCCLRQELVDAFVEHRYLLFMKLAALQLMQQNASQLETPSSLENGGPSSLESKSEDPPGQEAGSEEEGSSASGLAKVKELAETIAADDG-----------------TDPRSREVIRNACKAVGSISSTAFDIRFNPDIFSPGVRFPESCQDEV-RDQKQLLKDAAAFLLSCQIPGLVKDCMEHAVLPVDGATLAEVMRQRGINMRYLGKVLELVLRSPARHQLDHVFKIGIGELITRSAKHIFKTYLQGVELSGLSAAISHFLNCFLSSYPNPVAHLPADELVSKKRNKRRKNRPPG--AADNTAWAVMTPQELWKNICQEAKNYFDFDLECETVDQAVETYGLQKITLLREISLKTGIQVLLKEYSFDSRHKPAFTEEDVLNIFPVVKHVNPKASDAFHFFQSGQAKVQQGFLKEGCELINEALNLFNNVYGAMHVETCACLRLLARLHYIMGDYAEALSNQQKAVLMSERVMGTEHPNTIQEYMHLALYCFASSQLSTALSLLYRARYLMLLVFGEDHPEMALLDNNIGLVLHGVMEYDLSLRFLENALAVSTKYHGPKALKVALSHHLVARVYESKAEFRSALQHEKEGYTIYKTQLGEDHEKTKESSEYLKCLTQQAVALQRTMNEIYRNG 1215 The following BLAST results are available for this feature:
BLAST of TCONS_00017832 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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