TCONS_00017864 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017864
Unique NameTCONS_00017864
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1162

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017864 ID=TCONS_00017864|Name=TCONS_00017864|organism=Clytia hemisphaerica|type=transcript|length=1162bp
GTTTTatcagatttatttttgatagagGAGAGATTCAAACACAGtctcaa
aatatgaattttGGTTTGGTTTTCTTATGTTTATTAGGTTTGATAGCCTC
TGTTGCTCCATCGCCTATCAAAGATGAAAATCCGTGTGACGGAAAAGCTG
ATGGCGTGTATGAAATCCGCGACGTCTTCCGTTTCTTGAGATGCCGTAAG
GGAAAAGCATCCCTAAGAAATTGCAAGGACGGTCGATATTTCAGTCCGGT
TGCTGGAAGATGTATCAGAGGAAAGAAGGTTGATTTGACTACCTTTTGCA
AAGGTCGTGGAGAGAGCAATTTCCGTAACCCATGGGATTGTCACAACTAC
ATCACGTGTCACGGTGCACAGAGTTTCGATAGAGAGTGTGACGTTCACGT
AGAGCTGAACTATGACCCTTATCATGACCGATGTGAAAAGCCAGCTCTCT
TCCCATGCAAAGAATTAAatccAAAAGACATCATGGCAGAGATCATTGAA
GCTGAACTCATCGTTTTTTGAGCGCCATCATCACCAAAGCAAAAGGGGCT
ATACACCACGCACAAAACGCAAACGCCCTTTTGTTTGGAACCTTGCTCCT
GAAAGTGATAATTTAagtttaaatataatttttttatgttcattttgatt
aattttttttttgattctttACAATAACGCCATCTAAAGCTAATTTTCAA
CGAATATAGCGGACAATGCGGATCTGAGGATCTGATTcgaaattttgaga
aataaaaaactattgTAATTGTCTACGAAGTCttagttttaaatattttg
atactttttttatttttttacgcATTTGATACtgtaaaaaattgattttt
gggcacttttttgaaattaaatatatagtatttttgtaaaattttctttc
aaaatatttttaagaatatatctagaatttaaaaagttgcaactggactc
tttttttgtttcaatgaTACAATGTGATATCAGACGAGATATGGAAAGGA
ACCCAGTCAAATTTCATACACTCCGGCAAGATCCATTTCGACTGCAGCAT
CCTGTTTAAAAGTCTTGGCATgcttaaatatttccttccaacttgacttt
attttctttttttaaatccgaAATAATTCGATTGaagttaccttaaggga
actatttttggc
Run BLAST on NCBI

transcript from alignment at sc0000278:311674..314093+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017864 ID=TCONS_00017864|Name=TCONS_00017864|organism=Clytia hemisphaerica|type=transcript|length=2420bp|location=Sequence derived from alignment at sc0000278:311674..314093+ (Clytia hemisphaerica)
GTTTTatcagatttatttttgatagagGAGAGATTCAAACACAGtctcaa
aatatgaattttGGTTTGGTTTTCTTATGTTTATTAGGTTTGATAGGTAT
GTAGGAGAGCTTTAACAAAGGCTGGTGTGTTTATTAGCCAGTACGGGACG
TCTCGCTAGTCAGGTCAAAAAATCTGGCTGGCAGGGTCTAAAATTcgcta
aattttttaaaatcatgTAAAATCGGACCTAGGCTTATCATTTTTACCAC
TTTTTACTATGGATAATTATATCTATGATTATTTCTTTTCTTAACAGCCT
CTGTTGCTCCATCGCCTATCAAAGATGAAAATCCGTGTGACGGAAAAGCT
GATGGCGTGTATGAAATCCGCGACGTCTTCCGTTTCTTGAGATGCCGTAA
GGGAAAAGCATCCCTAAGAAATTGCAAGGACGGTCGATATTTCAGTCCGG
TTGCTGGAAGATGTATCAGAGGAAAGAAGGTTGATTTGAGTAAGTGAATT
AATCCTGCTtgatatactttttttttttctatcagaAACACCTTTACCTC
TTTTGCATGTCGTCATTTGAAGCGATGAACAAATTATCCAGAATTTCGGC
CGTTGATGTGAGGAAGGTGACGTAATCTTAGCTTGATATCATAAATAGCC
TCCATATTGTCAAATACATCTTCCTACCGAGCCAAACTCTTTTAGATATC
CTTCTTGAATCGATGTCCTACCATTAGACTATTAGAAAGAGTTTTTAGTT
AATATTTTGAAGTTAGATATTTTCCGATCCCCCTGTAATAATTAGTTGAA
ATGTTTCATGGACTTTTTATGAACGTTAGAGTGACgttgttttgatgttt
ggtACTAACCGGACCTTCAGTAACTGCCACTAAACCATGGAGCCAGTTTT
TCGATCCCGGCCAACCAAAATCTTTTGATAACGGTGTAATACATCGAGAC
CAACTTCTCCTCGAATACTCGTTTGACGTTAGGCTAGGTTCCGACATTAC
AATGACTTCCTTGATGGTTCCAGCTtcaaagaaactcatttcaaagaTAG
CATAAATTTTAGTTCAGTAGTAGCGACCATTGTTCTGTACGAAGACTTTC
ATGATATTCATAGCATCTCATTTTTTTATAGCTACCTTTTGCAAAGGTCG
TGGAGAGAGCAATTTCCGTAACCCATGGGATTGTCACAACTACATCACGT
GTCACGGTGCACAGAGTTTCGATAGAGAGTGTGACGTTCACGTAGAGCTG
AACTATGACCCTTATCATGACCGATGTGAAAAGCCAGCTCTCTTCCCATG
CAAAGAATTAAGTAAGTCTTATACTTTATAGTTTCTGTGTTAAAGTGTTG
TGAGACTGAGGTTGGGAGTTTACAGGGAAGAATTGACTCTATGTGCCTGT
AGTGGTTGCATTGATATACAGTTGACGTTCTCCATtatgacgttctacta
ttcgatacgctccattaatacaataatgactggTTAAGCGAGGGCTttaa
aaagccgtgtagcccgctctgaaaaagtaaccggttaacaatataCAATA
TTGAAGGTCACCGTCAAAAAGagactctcataaacgacgctcccttattc
gatgaaaatccaatttcccttgaatattgaattagagagcgttaGCTGTA
TTCACTTAGACAGAAATTGTGTCACCtggaaaatctttaaaaaatgtaaT
TGTTAACttcgttttttctttttcagatccAAAAGACATCATGGCAGAGA
TCATTGAAGCTGAACTCATCGTTTTTTGAGCGCCATCATCACCAAAGCAA
AAGGGGCTATACACCACGCACAAAACGCAAACGCCCTTTTGTTTGGAACC
TTGCTCCTGAAAGTGATAATTTAagtttaaatataatttttttatgttca
ttttgattaattttttttttgattctttACAATAACGCCATCTAAAGCTA
ATTTTCAACGAATATAGCGGACAATGCGGATCTGAGGATCTGATTcgaaa
ttttgagaaataaaaaactattgTAATTGTCTACGAAGTCttagttttaa
atattttgatactttttttatttttttacgcATTTGATACtgtaaaaaat
tgatttttgggcacttttttgaaattaaatatatagtatttttgtaaaat
tttctttcaaaatatttttaagaatatatctagaatttaaaaagttgcaa
ctggactctttttttgtttcaatgaTACAATGTGATATCAGACGAGATAT
GGAAAGGAACCCAGTCAAATTTCATACACTCCGGCAAGATCCATTTCGAC
TGCAGCATCCTGTTTAAAAGTCTTGGCATgcttaaatatttccttccaac
ttgactttattttctttttttaaatccgaAATAATTCGATTGaagttacc
ttaagggaactatttttggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010009XLOC_010009Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017864-exon-sc0000278-1491911889:311674..311769TCONS_00017864-exon-sc0000278-1491911889:311674..311769Clytia hemisphaericaexon
TCONS_00017864-exon-sc0000278-1510915933:311674..311769TCONS_00017864-exon-sc0000278-1510915933:311674..311769Clytia hemisphaericaexon
TCONS_00017864-exon-sc0000278-1575043694:311674..311769TCONS_00017864-exon-sc0000278-1575043694:311674..311769Clytia hemisphaericaexon
TCONS_00017864-exon-sc0000278-1491911889:311971..312162TCONS_00017864-exon-sc0000278-1491911889:311971..312162Clytia hemisphaericaexon
TCONS_00017864-exon-sc0000278-1510915933:311971..312162TCONS_00017864-exon-sc0000278-1510915933:311971..312162Clytia hemisphaericaexon
TCONS_00017864-exon-sc0000278-1575043694:311971..312162TCONS_00017864-exon-sc0000278-1575043694:311971..312162Clytia hemisphaericaexon
TCONS_00017864-exon-sc0000278-1491911889:312805..312984TCONS_00017864-exon-sc0000278-1491911889:312805..312984Clytia hemisphaericaexon
TCONS_00017864-exon-sc0000278-1510915933:312805..312984TCONS_00017864-exon-sc0000278-1510915933:312805..312984Clytia hemisphaericaexon
TCONS_00017864-exon-sc0000278-1575043694:312805..312984TCONS_00017864-exon-sc0000278-1575043694:312805..312984Clytia hemisphaericaexon
TCONS_00017864-exon-sc0000278-1491911889:313400..314093TCONS_00017864-exon-sc0000278-1491911889:313400..314093Clytia hemisphaericaexon
TCONS_00017864-exon-sc0000278-1510915933:313400..314093TCONS_00017864-exon-sc0000278-1510915933:313400..314093Clytia hemisphaericaexon
TCONS_00017864-exon-sc0000278-1575043694:313400..314093TCONS_00017864-exon-sc0000278-1575043694:313400..314093Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000278supercontigsc0000278:311674..314093 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	14.6606	6.51298	23.057	23.8155	1.72623	2.57431	1.13766	4.93527	70.8026	52.3812	0.480174	0.452841	37.1378	33.3923	49.7029	43.1555	11.2775	0.668828	4.41639	4.1373	141.444	91.4717
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017864 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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