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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017880 ID=TCONS_00017880|Name=TCONS_00017880|organism=Clytia hemisphaerica|type=transcript|length=5290bpRun BLAST on NCBI transcript from alignment at sc0000278:316601..330491- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017880 ID=TCONS_00017880|Name=TCONS_00017880|organism=Clytia hemisphaerica|type=transcript|length=13891bp|location=Sequence derived from alignment at sc0000278:316601..330491- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00017880 vs. Swiss-Prot (Human)
Match: CBPD (Carboxypeptidase D OS=Homo sapiens GN=CPD PE=1 SV=2) HSP 1 Score: 384.03 bits (985), Expect = 6.426e-110 Identity = 184/384 (47.92%), Postives = 259/384 (67.45%), Query Frame = 1
Query: 385 IHYEKYDELTRILKCYHKKYPDITKMGSIGKSVQGRELWYMQITDKPGEIEEGEPMFKYVGNMHGDEVISRQILIYLIQYLCDSYSTDRRVKKIVDSTNIFILPSMNPDGFELAKEGSCGYMYTGRGLPSGRENANNKDLNRNFPDQFTNWDKFKLKSAEPETRNMMRWIYKNPFVLSANLHGGSVVASYPFDDNKQMKDKVYSKSPDDAFFRHLALSYAKHNPIMKTGKPNCPHSNGESFKNGITNGAKWYNVPGGMQDFNYLISNCLEITVELSCCKYPHAKELKKEWGNNKESLLTYIEQVHRGIKGKVVDE-NGKPVAKALVNIKGIDHPIKSIKNGDYWRLLLPGSYLVNVSAHGYETEVRQVNVGERLATKLDFTLQK 1533
H+ + ++ L+ + +YP+IT++ S+GKSV+ REL+ M+I+D PG E GEP FKY+GNMHG+EV+ R++L+ LI+YLC ++ TD V +V +T I ++PSMNPDG+E ++EG + GR N+NN DLNRNFPDQF +PET +M W+ PFVLSANLHGGS+V +YPFDD++Q YSKSPDDA F+ +ALSY+K N M G+P E F +GITNGA WYNVPGGMQD+NYL +NC E+T+EL C KYP KEL W N+ SL+ +++QVH+G++G V+D +G+ + A +++ I+HP+ + K GDYWRLL+PG+Y + SA GY + V V A +++FTL +
Sbjct: 501 FHHHHFPDMEIFLRRFANEYPNITRLYSLGKSVESRELYVMEISDNPGVHEPGEPEFKYIGNMHGNEVVGRELLLNLIEYLCKNFGTDPEVTDLVHNTRIHLMPSMNPDGYEKSQEGDSISVI-------GRNNSNNFDLNRNFPDQFVQI----TDPTQPETIAVMSWMKSYPFVLSANLHGGSLVVNYPFDDDEQGL-ATYSKSPDDAVFQQIALSYSKENSQMFQGRPCKNMYPNEYFPHGITNGASWYNVPGGMQDWNYLQTNCFEVTIELGCVKYPLEKELPNFWEQNRRSLIQFMKQVHQGVRGFVLDATDGRGILNATISVAEINHPVTTYKTGDYWRLLVPGTYKITASARGYNPVTKNVTVKSEGAIQVNFTLVR 872 HSP 2 Score: 382.104 bits (980), Expect = 2.685e-109 Identity = 247/795 (31.07%), Postives = 402/795 (50.57%), Query Frame = 1
Query: 1915 TVKGRNLRCLEITNDVGK-------------PD------PTKANIALIAGLHGYDAIGREILMMFLHSLTKGHTEKKARVKKLLESTSIHIVPMVLSNEMDLAVEGDCN-GEKFPENA--------HDVHNKF-NINKKGDDPA-----EVNIVKDWMNSKPFLFSAVVEGGDMVVTYPPNTEVFGDHRIKG--HKTIDDELLRSLSVEYSVHNKKIYSGK----GCXXXXXXXXXXXXXDWKNEKNTLGDYLYRTKDSLLVNIHLSCCRNPQPSEVNGIWNDNKESLMRFAERAFSRIYGKVVNS-NGADVIDAVVKFSGTKVVANVSAIT-GHYQKYLLPRQY---VVTADHHSLDMVSHDVMITGKTPVRQDFTL---------------------------------YEKPQ---YKHHKYDDLVKHLNDLTQQCPNITRLSSMGKSREGKDLWVLEFSGNPGKPQAGKPEFAYIAGIHGNELVGRELILLLARHLCLGYGKEEHITQLVNHTRIHLIPLMNPDGAENAVEGSCSSTVGQNNAAGVDLATDFPVDKDDHSKPTQPETKALFKWLQNKTSLVYATLHSGSLVVGYPYSERWSVDSDFSPTADDDIFRAISQSYSKDHPTMSNGEPFCPGKEVHRKFKDGVVNMATWKGHSMPMLDYNYVTNKGIGFAIFTGCCKAPGSEQLDRIWKNHKKAMLKFMKWTHRGVKGFVYDRTSKKALEGATIQIKGRDFQTTTSNFGDFWRILTPGSYKITALAEGYQPKNFEIKVDSDAESPTEIVFSLDKS 4056
+V+GR L L +T +G PD P + + L+ +HG + + R++L+ L G+ R+ +LL +T ++++P + + + A EGDC G+ P A D++ F + G+ PA EV + +W+ F+ S + GG +V +YP + +H+ G KT DDE+ + L+ Y+ ++ + +G+ G GI++G W + + + DY Y + + + LSCC+ P S++ W +N+ESL+ E+ + G V +S G+ + +A + +G + N++ G + + L+P Y VV + L + +V++ DF+L Y+ Q + HH + D+ L + PNITRL S+GKS E ++L+V+E S NPG + G+PEF YI +HGNE+VGREL+L L +LC +G + +T LV++TRIHL+P MNPDG E + EG S +G+NN+ DL +FP + PTQPET A+ W+++ ++ A LH GSLVV YP+ + + +S + DD +F+ I+ SYSK++ M G P C + F G+ N A+W M D+NY+ I GC K P ++L W+ +++++++FMK H+GV+GFV D T + + ATI + + TT GD+WR+L PG+YKITA A GY P + V S E ++ F+L +S
Sbjct: 88 SVEGRPLWVLRLTAGLGSLIPEGDAGPDAAGPDAAGPLLPGRPQVKLVGNMHGDETVSRQVLIYLARELAAGYRRGDPRLVRLLNTTDVYLLPSLNPDGFERAREGDCGFGDGGPSGASGRDNSRGRDLNRSFPDQFSTGEPPALDEVPEVRALIEWIRRNKFVLSGNLHGGSVVASYPFDDS--PEHKATGIYSKTSDDEVFKYLAKAYASNHPIMKTGEPHCPGDEDETFKDGITNGAHWYDVEGGMQDYNYVWANCFEITLELSCCKYPPASQLRQEWENNRESLITLIEKVHIGVKGFVKDSITGSGLENATISVAG--INHNITTGRFGDFYRLLVPGTYNLTVVLTGYMPLTVT--NVVVKEGPATEVDFSLRPTVTSVIPDTTEAVSTASTVAIPNILSGTSSSYQPIQPKDFHHHHFPDMEIFLRRFANEYPNITRLYSLGKSVESRELYVMEISDNPGVHEPGEPEFKYIGNMHGNEVVGRELLLNLIEYLCKNFGTDPEVTDLVHNTRIHLMPSMNPDGYEKSQEGDSISVIGRNNSNNFDLNRNFPDQFVQITDPTQPETIAVMSWMKSYPFVLSANLHGGSLVVNYPFDDDEQGLATYSKSPDDAVFQQIALSYSKENSQMFQGRP-CKNMYPNEYFPHGITNGASWYNVPGGMQDWNYLQTNCFEVTIELGCVKYPLEKELPNFWEQNRRSLIQFMKQVHQGVRGFVLDATDGRGILNATISVAEINHPVTTYKTGDYWRLLVPGTYKITASARGYNPVTKNVTVKS--EGAIQVNFTLVRS 873 HSP 3 Score: 374.4 bits (960), Expect = 1.151e-106 Identity = 186/381 (48.82%), Postives = 260/381 (68.24%), Query Frame = 1
Query: 457 KMGSIGKSVQGRELWYMQIT-------------------DKPGEIEEGEPMFKYVGNMHGDEVISRQILIYLIQYLCDSYST-DRRVKKIVDSTNIFILPSMNPDGFELAKEGSCGYMYTGRGLPSGRENANNKDLNRNFPDQFTNWDKFKLKSAEPETRNMMRWIYKNPFVLSANLHGGSVVASYPFDDNKQMKDK-VYSKSPDDAFFRHLALSYAKHNPIMKTGKPNCPHSNGESFKNGITNGAKWYNVPGGMQDFNYLISNCLEITVELSCCKYPHAKELKKEWGNNKESLLTYIEQVHRGIKGKVVDE-NGKPVAKALVNIKGIDHPIKSIKNGDYWRLLLPGSYLVNVSAHGY-ETEVRQVNVGERLATKLDFTLQ 1530
++ SIG+SV+GR LW +++T D G + G P K VGNMHGDE +SRQ+LIYL + L Y D R+ +++++T++++LPS+NPDGFE A+EG CG+ G SGR+N+ +DLNR+FPDQF+ + L PE R ++ WI +N FVLS NLHGGSVVASYPFDD+ + K +YSK+ DD F++LA +YA ++PIMKTG+P+CP E+FK+GITNGA WY+V GGMQD+NY+ +NC EIT+ELSCCKYP A +L++EW NN+ESL+T IE+VH G+KG V D G + A +++ GI+H I + + GD++RLL+PG+Y + V GY V V V E AT++DF+L+
Sbjct: 81 RLFSIGRSVEGRPLWVLRLTAGLGSLIPEGDAGPDAAGPDAAGPLLPGRPQVKLVGNMHGDETVSRQVLIYLARELAAGYRRGDPRLVRLLNTTDVYLLPSLNPDGFERAREGDCGFGDGGPSGASGRDNSRGRDLNRSFPDQFSTGEPPALDEV-PEVRALIEWIRRNKFVLSGNLHGGSVVASYPFDDSPEHKATGIYSKTSDDEVFKYLAKAYASNHPIMKTGEPHCPGDEDETFKDGITNGAHWYDVEGGMQDYNYVWANCFEITLELSCCKYPPASQLRQEWENNRESLITLIEKVHIGVKGFVKDSITGSGLENATISVAGINHNITTGRFGDFYRLLVPGTYNLTVVLTGYMPLTVTNVVVKEGPATEVDFSLR 460 HSP 4 Score: 327.405 bits (838), Expect = 2.151e-91 Identity = 238/840 (28.33%), Postives = 403/840 (47.98%), Query Frame = 1
Query: 1825 FKYHDYDSMTKYFFQHQEKFPDLVKIHNLG-TVKGRNLRCLEITNDVGKPDPTKANIALIAGLHGYDAIGREILMMFLHSLTKGHTEKKARVKKLLESTSIHIVPMVLSNEMDLAVEGDCNGEKFPENAHDVHNKFNINK-------KGDDPA--EVNIVKDWMNSKPFLFSAVVEGGDMVVTYPPNTEVFGDHRIKGHKTIDDELLRSLSVEYSVHNKKIYSGKGCXXXXXXXX----XXXXXDWKNEKNTLGDYLYRTKDSLLVNIHLSCCRNPQPSEVNGIWNDNKESLMRFAERAFSRIYGKVVN-SNGADVIDAVVKFSGTKVVANVSAI-TGHYQKYLLPRQYVVTADHHSLDMVSHDVMITGKTPVRQDFTLYEKPQYKHH---------------------KYDDLVKHLN---------------------------DLTQ-------QCPNITRLSSMGKSREGKDLWVLEFSGNPGKPQAGKPEFAYIAGIHGNELVGRELILLLARHLCLGYGKEEHITQLVNHTRIHLIPLMNPDGAENAVEGSCSSTVGQNNAAGVDLATDFPVDKDDHSKPTQPETKALFKWLQNKTSL-VYATLHSGSLVVGYPYSERWSVDSDFSPTADDDIFRAISQSYSKDHPTMSNGEPFCPGKEVHRKFKDGVVNMATWKGHSMPMLDYNYVTNKGIGFAIFTGCCKAPGSEQLDRIWKNHKKAMLKFMKWTHRGVKGFVYDRTSKKALEGATIQIKGRDFQTTTSNFGDFWRILTPGSYKITALAEGYQPKNFEIKVDSDAESPTEIVFSLD-------KSGIVRVSGIIFLALIASC 4107
F +H + M + + ++P++ ++++LG +V+ R L +EI+++ G +P + I +HG + +GRE+L+ + L K V L+ +T IH++P + + + + EGD N+ N F++N+ + DP E V WM S PF+ SA + GG +VV YP + + G K+ DD + + +++ YS N +++ G+ C N I++G W N + D+ Y + V I L C + P E+ W N+ SL++F ++ + G V++ ++G +++A + + ++ V+ TG Y + L+P Y +TA + V+ +V + + ++ +FTL ++ +++ L+K L+ DL++ P+IT L+++G+S E + +W LE S P + +P+ ++AGIHGN VG EL+L LA LCL Y K +TQLV+ TRI ++P +NPDG E A E C+S +GQ NA G DL TDF + +QPETKA+ + L K + L GS++V YPY D + + + ++ Y+ +HP+M G+P CP K GV+ A W H M DY+ ++T CC P + +L +W ++K+++L + H+GV GFV D+T K + + +G QT + F +L PG + I A+A+GYQ ++ ++ V DA S IVF D + +V VSG ALI +
Sbjct: 501 FHHHHFPDMEIFLRRFANEYPNITRLYSLGKSVESRELYVMEISDNPGVHEPGEPEFKYIGNMHGNEVVGRELLLNLIEYLCKNFG-TDPEVTDLVHNTRIHLMPSMNPDGYEKSQEGDSISVIGRNNS----NNFDLNRNFPDQFVQITDPTQPETIAVMSWMKSYPFVLSANLHGGSLVVNYPFDDDEQGLATYS--KSPDDAVFQQIALSYSKENSQMFQGRPCKNMYPNEYFPHGITNGASWYNVPGGMQDWNYLQTNCFEVTIELGCVKYPLEKELPNFWEQNRRSLIQFMKQVHQGVRGFVLDATDGRGILNATISVA--EINHPVTTYKTGDYWRLLVPGTYKITASARGYNPVTKNVTVKSEGAIQVNFTLVRSSTDSNNESKKGKGASSSTNDASDPTTKEFETLIKDLSAENGLESLMLRSSSNLALALYRYHSYKDLSEFLRGLVMNYPHITNLTNLGQSTEYRHIWSLEISNKPNVSEPEEPKIRFVAGIHGNAPVGTELLLALAEFLCLNYKKNPAVTQLVDRTRIVIVPSLNPDGRERAQEKDCTSKIGQTNARGKDLDTDFT------NNASQPETKAIIENLIQKQDFSLSVALDGGSMLVTYPY------DKPVQTVENKETLKHLASLYANNHPSMHMGQPSCPNKS-DENIPGGVMRGAEWHSHLGSMKDYSVTYGHCPEITVYTSCCYFPSAARLPSLWADNKRSLLSMLVEVHKGVHGFVKDKTGKPISKAVIVLNEGIKVQTKEGGY--FHVLLAPGVHNIIAIADGYQQQHSQVFVHHDAASSVVIVFDTDNRIFGLPRELVVTVSGATMSALILTA 1316 HSP 5 Score: 245.743 bits (626), Expect = 1.646e-65 Identity = 136/382 (35.60%), Postives = 206/382 (53.93%), Query Frame = 1
Query: 3001 RLSSMGKSREGKDLWVLEFSGNPGK-------------PQA------GKPEFAYIAGIHGNELVGRELILLLARHLCLGYGK-EEHITQLVNHTRIHLIPLMNPDGAENAVEGSC-------SSTVGQNNAAGVDLATDFPVDKDDHSKPTQ----PETKALFKWLQNKTSLVYATLHSGSLVVGYPY--SERWSVDSDFSPTADDDIFRAISQSYSKDHPTMSNGEPFCPGKEVHRKFKDGVVNMATWKGHSMPMLDYNYVTNKGIGFAIFTGCCKAPGSEQLDRIWKNHKKAMLKFMKWTHRGVKGFVYDRTSKKALEGATIQIKGRDFQTTTSNFGDFWRILTPGSYKITALAEGYQPKNFEIKVDSDAESPTEIVFSL 4047
RL S+G+S EG+ LWVL + G P A G+P+ + +HG+E V R++++ LAR L GY + + + +L+N T ++L+P +NPDG E A EG C S G++N+ G DL FP D+ +P PE +AL +W++ ++ LH GS+V YP+ S +S T+DD++F+ ++++Y+ +HP M GEP CPG E FKDG+ N A W M DYNYV + CCK P + QL + W+N++++++ ++ H GVKGFV D + LE ATI + G + TT FGDF+R+L PG+Y +T + GY P V + + TE+ FSL
Sbjct: 81 RLFSIGRSVEGRPLWVLRLTAGLGSLIPEGDAGPDAAGPDAAGPLLPGRPQVKLVGNMHGDETVSRQVLIYLARELAAGYRRGDPRLVRLLNTTDVYLLPSLNPDGFERAREGDCGFGDGGPSGASGRDNSRGRDLNRSFP-DQFSTGEPPALDEVPEVRALIEWIRRNKFVLSGNLHGGSVVASYPFDDSPEHKATGIYSKTSDDEVFKYLAKAYASNHPIMKTGEPHCPGDE-DETFKDGITNGAHWYDVEGGMQDYNYVWANCFEITLELSCCKYPPASQLRQEWENNRESLITLIEKVHIGVKGFVKDSITGSGLENATISVAGINHNITTGRFGDFYRLLVPGTYNLTVVLTGYMPLTVTNVVVKEGPA-TEVDFSL 459 HSP 6 Score: 215.698 bits (548), Expect = 2.930e-56 Identity = 126/380 (33.16%), Postives = 214/380 (56.32%), Query Frame = 1
Query: 382 MIHYEKYDELTRILKCYHKKYPDITKMGSIGKSVQGRELWYMQITDKPGEIEEGEPMFKYVGNMHGDEVISRQILIYLIQYLCDSYSTDRRVKKIVDSTNIFILPSMNPDGFELAKEGSCGYMYTGRGLPSGRENANNKDLNRNFPDQFTNWDKFKLKSAEPETRNMMR-WIYKNPFVLSANLHGGSVVASYPFDDNKQMKDKVYSKSPDDAFFRHLALSYAKHNPIMKTGKPNCPHSNGESFKNGITNGAKWYNVPGGMQDFNYLISNCLEITVELSCCKYPHAKELKKEWGNNKESLLTYIEQVHRGIKGKVVDENGKPVAKALVNI-KGIDHPIKSIKNGDYWRLLLPGSYLVNVSAHGYETEVRQVNVGERLATKL 1515
+ Y Y +L+ L+ YP IT + ++G+S + R +W ++I++KP E EP ++V +HG+ + ++L+ L ++LC +Y + V ++VD T I I+PS+NPDG E A+E C G+ NA KDL+ +F + +++PET+ ++ I K F LS L GGS++ +YP+D Q + + +HLA YA ++P M G+P+CP+ + E+ G+ GA+W++ G M+D++ +C EITV SCC +P A L W +NK SLL+ + +VH+G+ G V D+ GKP++KA++ + +GI +++ + G + LL PG + + A GY+ + QV V A+ +
Sbjct: 930 LYRYHSYKDLSEFLRGLVMNYPHITNLTNLGQSTEYRHIWSLEISNKPNVSEPEEPKIRFVAGIHGNAPVGTELLLALAEFLCLNYKKNPAVTQLVDRTRIVIVPSLNPDGRERAQEKDCTSKI-------GQTNARGKDLDTDFTNN----------ASQPETKAIIENLIQKQDFSLSVALDGGSMLVTYPYDKPVQTVE-------NKETLKHLASLYANNHPSMHMGQPSCPNKSDENIPGGVMRGAEWHSHLGSMKDYSVTYGHCPEITVYTSCCYFPSAARLPSLWADNKRSLLSMLVEVHKGVHGFVKDKTGKPISKAVIVLNEGIK--VQTKEGGYFHVLLAPGVHNIIAIADGYQQQHSQVFVHHDAASSV 1283 The following BLAST results are available for this feature:
BLAST of TCONS_00017880 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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