TCONS_00017916 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00017916
Unique Name	TCONS_00017916
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1070

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000279:236472..240167+
coding sequence from alignment at sc0000279:236472..240167+

transcript sequence

>TCONS_00017916 ID=TCONS_00017916|Name=TCONS_00017916|organism=Clytia hemisphaerica|type=transcript|length=1070bp
tgaagatCCAGTGATAAATTAGAGGATGGATGTTGATAATAGACGATCTA
CGGTATCTTTGGATTTATTTATAAGTATTTCTCTGTAATAGGTATAATAA
GTAAAAAAACCATCACCACCACCTCAGTTATATTCAAAATGACTAAAACT
TCAAGaGGGAGAATTGAACTTGGTGCTGTCACCCCACACAatataaaaca
attgaaaaaattaaattcagtTGTTTTTCCTGTATCTTATAATGACAAAt
tttacaAAGATATCTTAGATGTTGGAGAACTAGCAAAATTAGcATATTAC
AACGATATAGTGGTTGGCGCAGTGTGTTGTCGGATAGATAAACTAGACAA
TGCCAGAAGATTATATATCATGACCCTTGGATGTTTAGCAAGATACAGGC
GATATGGAATTGGCACGGAAATGCTGAAACATGTTCTAAAGATATGCGAA
GATGACGGAAAATTTGACAGTGTATATCTGCATGTTCAAATCAGCAACGA
GGGTGCTATTGATTTTTATCAGAATTTCGGATTCGAAATCATCGAAACAA
AACAACAATATTATAAACGAATCGAACCAGCTGATGCTTATGTTCTACAA
AAAACCCTTACACAAAACGGCAACAAAAAATGAAGACTGATTaaatttcg
tgttaattttGCCGTTGAAGAATGAGTACACAAAAGAAACTACATAGATT
TCAGGATGTACGAGACATTGATAAATAACTTGAAACTTACTTTCGGATAT
AATCCCGTTTTATTATCGGGATAATTATCCCCGGTTTATGTAAACATGGG
AATTGTATGAGAGAGAAATGGATTTTTTTAATGTTGTGAGGCagctttga
ttttcttttgttatatcATGTGTTTTGTTTGTTGcgtaaaaaatgatttt
ttacacaggTTTTTGTATGAATTGTGATAGCaagattttcaacaaaagaa
agaaatatgaaatattgaaattataaaaatgatcatttatatttttgtca
attttcttgCAATGTTGACACAATCATCCAAACGTTTATAGAGGTTTCTA
TATCGTCTTGGGCTTCTTAA

Run BLAST on NCBI

protein sequence of TCONS_00017916-protein

>TCONS_00017916-protein ID=TCONS_00017916-protein|Name=TCONS_00017916-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
MTKTSRGRIELGAVTPHNIKQLKKLNSVVFPVSYNDKFYKDILDVGELAK
LAYYNDIVVGAVCCRIDKLDNARRLYIMTLGCLARYRRYGIGTEMLKHVL
KICEDDGKFDSVYLHVQISNEGAIDFYQNFGFEIIETKQQYYKRIEPADA
YVLQKTLTQNGNKK

Run BLAST on NCBI

transcript from alignment at sc0000279:236472..240167+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00017916 ID=TCONS_00017916|Name=TCONS_00017916|organism=Clytia hemisphaerica|type=transcript|length=3696bp|location=Sequence derived from alignment at sc0000279:236472..240167+ (Clytia hemisphaerica)
tgaagatCCAGTGATAAATTAGAGGATGGATGTTGATAATAGACGATCTA
CGGTATCTTTGGATTTATTTATAAGTATTTCTCTGTAATAGGTATAATAA
GTAAAAAAACCATCACCACCACCTCAGTTATATTCAAAATGACTAAAACT
TCAAGGTAAGTAAAGTTTTCTATACTATAacatgttgatttttttttgaa
aatggattTGACACCCTCTAATTCAATTTCCAAGGGGAAtcagattttca
tcgaataagggagcatatGGAATAGCAGAGCGCTGTTTATGGAAGTTTCT
TTTTGGCGGTGTaaactttcaatattattgaaTAATTGAGCGTATTGAAT
AGTAGAAAGTCAAATTAGAACACGTCGACTGTATCATACTACTGGTAGTT
CTTTCTTAAGATAACAGAAAACCAAACAGGTATTGACTGATATGTCTGGA
ATATGGAAATTGTGCTAGTTTTTGTCCATAGACCATACCAATATACccca
aaaaatggcgaaattaaTTTCCATGTTATAGTGTAGCTTTATTATATATA
TTATTAATaaatttgttgttgttattttggtaatttttagaGGGAGAATT
GAACTTGGTGCTGTCACCCCACACAatataaaacaattgaaaaaattaaa
ttcagtTGTTTTTCCTGTATCTTATAATGACAAAGTAAGTAAgaagaact
ttttttctacttgaTTCATTTAAAGTATCACACTGTAAAATCCCAGCACA
AGCTCCCTACTTCCTTTACTTTTTGTCCACACTGATCTGCACTCATTCAT
CTATGTTTATTGATATTgatatacatattttcataagCAACCAGGTGGTT
AAGACTTGAGCCCTCAAATTTGccaatatcttttttttcactttcttgta
aagtgaaattgttaaaaataatCTAACCATCACAGGCGATACCCTTTGAC
CCAATGAGCAAAAATATGTTAAGATATAAGGGCTGGTTGaggcaaatttt
tcagaaaatgtagaGCTATAATGAGCTAAGCAACCTTAGCCCTCACCCAA
ACATtgggagttgcttataaaaaaaagtgtacagtGATATACAATTATTG
ATTTGCCATATAAATAAACTTTGTTTTGTAAGTATCTTGAAacctatata
tttttttcatctataTTTCCATCTGTATTTTACACGCCACAGTATGTTAA
AAAATATCtctatttttttcagttttacaAAGATATCTTAGATGTTGGAG
AACTAGCAAAATTAGGTAACTGTTACCAGGGCATACGAAATAACGTCTCT
TTTTTTGCCTTCTTTGCAGACCTTCTTCTTGTCGCCCCACAGGTTTTCGA
GTTTAGAAAATATTGTGTGTCTTGGATGTATTATGTATCAGCCAAAGAGC
ACACTAAAAATTTGCCctggaaattggaaaaaattcccctcTGAAACATG
ATGCTGCAGATTGACAATTTTgatctaaaataaaaattaggcTTCATTTA
TGTAGACCCCTCACCCTTTTTAAAGATTGTGATTTTAAAGGTTTATTAAt
atatctttgttgttttgttttgatgaatcaacattttaagttcattttac
tttcttcattttcagcATATTACAACGATATAGTGGTTGGCGCAGTGTGT
TGTCGGATAGATAAACTAGACAATGCCAGAAGATTATATATCATGACCCT
TGGATGTTTAGCAAGATACAGGCGATATGGAATTGGTATGTCTAAAGTTT
AGTTTCAACGTGATTGGTACAATTGAAGAttgaaaattgttaatgaaGAT
TATTTCTGCATTTTCGGAAATTCTGTTCCAAATTCTTTTGCCTTGATATC
CTATGACTTACCGGAAAGTATAGTAAGGGTCTTTACTTTTTCAGTGGATA
GCCAGTAGTATTCCACTCTTAATTATATGTTCAGCAAGTAAAAAATCACA
TTCTCTGGCATATCAACAATCCTTTTTAATTAACTctaatcattttttct
ttttgccgaCAATTATATAAACAAACTTCTTGGAGTTACCTGCTCATACC
TCAATGCATTAGTTATCTTCTTATTTCTGTAGGCACGGAAATGCTGAAAC
ATGTTCTAAAGATATGCGAAGATGACGGAAAATTTGACAGTGTATATCTG
TGAGTCAACAAACTCTTTATATACCTAATAAATTTGTTTTGTCTGTTTGG
TTTTCTGTTTCTCTTGTCCGTTAATTGTTCACTACATTATGTTTGAGTTT
TCTACTGTCAGTAAAGAGGTTTCAACCAATACAATACTGTTACTTACTTG
TGATACAATAACACATTAACACACTATGTTATACCATACACAGTACATAC
TATACACAGTATTTGAAGCAATGCCTAGATTGCATCAATTCAAAGCAGTA
GAAGCAGTTAGTTTCCATAAGCTTTTTAAACAATACCATAACAACCTGCA
AGCACGTACAAATTTTTGGTGCTTCTTTATTCAGTGTATTGCACTTGTAT
ATTTTTGCACAATATATTCTGTTCATAACTTTCGACAGCCAATAACCAGC
AATAACTTCTATATCAGAGTAAAACTTGTAAAGATACTTAGTGGACAAAA
TAGGAAATCACGTCTTAATGAATATCTTAGCACTTAGCACTTCACAGCAC
TCACATTAACGGTACGGTATGTTATTAGTAATTATTAGTTTCAAACTCGT
CGCTTATGTCGGTTTCTTCTGGCATTCCCGATTATTTGATTAATTGATAT
TGATTGAGATATGAGTTTTATGATCAAATAGACAACTGCCCTTTTATTAC
ACCCTTGTGAAATTTCGCCAAActtttgtccccggtggaaaaaagcACCC
TACAATTTCATCCCCAGacggaaattgactttgatttgatGATCCCCATT
GGAGATTCCACTGTAAAACCATCTCCACTGGATTTTTTCAGCTTAGATAA
ATAGAATTTCTACccccattggaatttcgatAGAAAAATATACCCCTGTT
GTTGGAAAAGTtttaccggggctgtgagacaggggtgtttaatgGGAAGT
AAATTGAACCTTGGAACTTCTGTAGctatcactttcattttccctATATT
TCTAGGCATGTTCAAATCAGCAACGAGGGTGCTATTGATTTTTATCAGAA
TTTCGGATTCGAAATCATCGAAACAAAACAACAATATTATAAACGAATCG
AACCAGCTGATGCTTATGTTCTACAAAAAACCCTTACACAAAACGGCAAC
AAAAAATGAAGACTGATTaaatttcgtgttaattttGCCGTTGAAGAATG
AGTACACAAAAGAAACTACATAGATTTCAGGATGTACGAGACATTGATAA
ATAACTTGAAACTTACTTTCGGATATAATCCCGTTTTATTATCGGGATAA
TTATCCCCGGTTTATGTAAACATGGGAATTGTATGAGAGAGAAATGGATT
TTTTTAATGTTGTGAGGCagctttgattttcttttgttatatcATGTGTT
TTGTTTGTTGcgtaaaaaatgattttttacacaggTTTTTGTATGAATTG
TGATAGCaagattttcaacaaaagaaagaaatatgaaatattgaaattat
aaaaatgatcatttatatttttgtcaattttcttgCAATGTTGACACAAT
CATCCAAACGTTTATAGAGGTTTCTATATCGTCTTGGGCTTCTTAA

Coding sequence (CDS) from alignment at sc0000279:236472..240167+

>TCONS_00017916 ID=TCONS_00017916|Name=TCONS_00017916|organism=Clytia hemisphaerica|type=CDS|length=2970bp|location=Sequence derived from alignment at sc0000279:236472..240167+ (Clytia hemisphaerica)
ATGACTAAAACTTCAAGaGGGAGAATTGAACTTGGTGCTGTCACCCCACA
CAatataaaacaattgaaaaaattaaattcagtTGTTTTTCCTGTATCTT
ATAATGACAAAttttacaAAGATATCTTAGATGTTGGAGAACTAGCAAAA
TTAGcATATTACAACGATATAGTGGTTGGCGCAGTGTGTTGTCGGATAGA
TAAACTAGACAATGCCAGAAGATTATATATCATGACCCTTGGATGTTTAG
CAAGATACAGGCGATATGGAATTGGCACGGAAATGCTGAAACATGTTCTA
AAGATATGCGAAGATGACGGAAAATTTGACAGTGTATATCTGCATGTTCA
AATCAGCAACGAGGGTGCTATTGATTTTTATCAGAATTTCGGATTCGAAA
TCATCGAAACAAAACAACAATATTATAAACGAATCGAACCAGCTGATGCT
TATGTTCTACAAAAAACCCTTACACAAAACGGCAACAAAAAATGAATGAC
TAAAACTTCAAGaGGGAGAATTGAACTTGGTGCTGTCACCCCACACAata
taaaacaattgaaaaaattaaattcagtTGTTTTTCCTGTATCTTATAAT
GACAAAttttacaAAGATATCTTAGATGTTGGAGAACTAGCAAAATTAGc
ATATTACAACGATATAGTGGTTGGCGCAGTGTGTTGTCGGATAGATAAAC
TAGACAATGCCAGAAGATTATATATCATGACCCTTGGATGTTTAGCAAGA
TACAGGCGATATGGAATTGGCACGGAAATGCTGAAACATGTTCTAAAGAT
ATGCGAAGATGACGGAAAATTTGACAGTGTATATCTGCATGTTCAAATCA
GCAACGAGGGTGCTATTGATTTTTATCAGAATTTCGGATTCGAAATCATC
GAAACAAAACAACAATATTATAAACGAATCGAACCAGCTGATGCTTATGT
TCTACAAAAAACCCTTACACAAAACGGCAACAAAAAATGAATGACTAAAA
CTTCAAGaGGGAGAATTGAACTTGGTGCTGTCACCCCACACAatataaaa
caattgaaaaaattaaattcagtTGTTTTTCCTGTATCTTATAATGACAA
AttttacaAAGATATCTTAGATGTTGGAGAACTAGCAAAATTAGcATATT
ACAACGATATAGTGGTTGGCGCAGTGTGTTGTCGGATAGATAAACTAGAC
AATGCCAGAAGATTATATATCATGACCCTTGGATGTTTAGCAAGATACAG
GCGATATGGAATTGGCACGGAAATGCTGAAACATGTTCTAAAGATATGCG
AAGATGACGGAAAATTTGACAGTGTATATCTGCATGTTCAAATCAGCAAC
GAGGGTGCTATTGATTTTTATCAGAATTTCGGATTCGAAATCATCGAAAC
AAAACAACAATATTATAAACGAATCGAACCAGCTGATGCTTATGTTCTAC
AAAAAACCCTTACACAAAACGGCAACAAAAAATGAATGACTAAAACTTCA
AGaGGGAGAATTGAACTTGGTGCTGTCACCCCACACAatataaaacaatt
gaaaaaattaaattcagtTGTTTTTCCTGTATCTTATAATGACAAAtttt
acaAAGATATCTTAGATGTTGGAGAACTAGCAAAATTAGcATATTACAAC
GATATAGTGGTTGGCGCAGTGTGTTGTCGGATAGATAAACTAGACAATGC
CAGAAGATTATATATCATGACCCTTGGATGTTTAGCAAGATACAGGCGAT
ATGGAATTGGCACGGAAATGCTGAAACATGTTCTAAAGATATGCGAAGAT
GACGGAAAATTTGACAGTGTATATCTGCATGTTCAAATCAGCAACGAGGG
TGCTATTGATTTTTATCAGAATTTCGGATTCGAAATCATCGAAACAAAAC
AACAATATTATAAACGAATCGAACCAGCTGATGCTTATGTTCTACAAAAA
ACCCTTACACAAAACGGCAACAAAAAATGAATGACTAAAACTTCAAGaGG
GAGAATTGAACTTGGTGCTGTCACCCCACACAatataaaacaattgaaaa
aattaaattcagtTGTTTTTCCTGTATCTTATAATGACAAAttttacaAA
GATATCTTAGATGTTGGAGAACTAGCAAAATTAGcATATTACAACGATAT
AGTGGTTGGCGCAGTGTGTTGTCGGATAGATAAACTAGACAATGCCAGAA
GATTATATATCATGACCCTTGGATGTTTAGCAAGATACAGGCGATATGGA
ATTGGCACGGAAATGCTGAAACATGTTCTAAAGATATGCGAAGATGACGG
AAAATTTGACAGTGTATATCTGCATGTTCAAATCAGCAACGAGGGTGCTA
TTGATTTTTATCAGAATTTCGGATTCGAAATCATCGAAACAAAACAACAA
TATTATAAACGAATCGAACCAGCTGATGCTTATGTTCTACAAAAAACCCT
TACACAAAACGGCAACAAAAAATGAATGACTAAAACTTCAAGaGGGAGAA
TTGAACTTGGTGCTGTCACCCCACACAatataaaacaattgaaaaaatta
aattcagtTGTTTTTCCTGTATCTTATAATGACAAAttttacaAAGATAT
CTTAGATGTTGGAGAACTAGCAAAATTAGcATATTACAACGATATAGTGG
TTGGCGCAGTGTGTTGTCGGATAGATAAACTAGACAATGCCAGAAGATTA
TATATCATGACCCTTGGATGTTTAGCAAGATACAGGCGATATGGAATTGG
CACGGAAATGCTGAAACATGTTCTAAAGATATGCGAAGATGACGGAAAAT
TTGACAGTGTATATCTGCATGTTCAAATCAGCAACGAGGGTGCTATTGAT
TTTTATCAGAATTTCGGATTCGAAATCATCGAAACAAAACAACAATATTA
TAAACGAATCGAACCAGCTGATGCTTATGTTCTACAAAAAACCCTTACAC
AAAACGGCAACAAAAAATGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010045	XLOC_010045	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00017916-protein	TCONS_00017916-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000279	supercontig	sc0000279:236472..240167 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
344.023	353.156	344.405	334.117	51.789	37.8946	84.4965	86.6927	70.1402	60.3859	56.316	49.2044	42.9974	52.3658	48.9012	43.866	72.3515	71.5264	31.4061	27.364	74.5399	79.7504	156.948	135.602	46.3196	64.0026	69.7783	54.8721	83.3743	78.6547

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000182	GNAT_dom
IPR016181	Acyl_CoA_acyltransferase

Vocabulary: **Molecular Function**
Term	Definition
GO:0008080	N-acetyltransferase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008080	N-acetyltransferase activity

Blast

[Close]

BLAST of TCONS_00017916 vs. Swiss-Prot (Human)
Match: NAA50 (N-alpha-acetyltransferase 50 OS=Homo sapiens GN=NAA50 PE=1 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 5.786e-85
Identity = 120/151 (79.47%), Postives = 133/151 (88.08%), Query Frame = 1

Query:  157 GRIELGAVTPHNIKQLKKLNSVVFPVSYNDKFYKDILDVGELAKLAYYNDIVVGAVCCRIDKLDNARRLYIMTLGCLARYRRYGIGTEMLKHVLKICEDDGKFDSVYLHVQISNEGAIDFYQNFGFEIIETKQQYYKRIEPADAYVLQKTL 609
             RIELG VTPHNIKQLK+LN V+FPVSYNDKFYKD+L+VGELAKLAY+NDI VGAVCCR+D   N +RLYIMTLGCLA YRR GIGT+ML HVL ICE DG FD++YLHVQISNE AIDFY+ FGFEIIETK+ YYKRIEPADA+VLQK L
Sbjct:    4 SRIELGDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGELAKLAYFNDIAVGAVCCRVDHSQNQKRLYIMTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFDNIYLHVQISNESAIDFYRKFGFEIIETKKNYYKRIEPADAHVLQKNL 154

The following BLAST results are available for this feature:

BLAST of TCONS_00017916 vs. Swiss-Prot (Human)

BLAST of TCONS_00017916 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NAA50	5.786e-85	79.47	N-alpha-acetyltransferase 50 OS=Homo sapiens GN=NA...	[more]

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TCONS_00017916 (transcript) - C. hemisphaerica