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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017917 ID=TCONS_00017917|Name=TCONS_00017917|organism=Clytia hemisphaerica|type=transcript|length=1177bp
GTTAATTTATGCAAGTATGCTGATAATGTTCAGTTCCCCATTTCCTTATC
GGTTCTCTTGTAAAATACATTTGTTAAGGAAGTAGTTCAAACCCCTTTCA
AGGGAGTTGAGATATGTAAAAATAGGATAGTCATGTAAAACCGTATAAAT
TGAGAAGATATTCAGCTCAAAACAGTTCTAGTCGTAAAGAAGTAAACAAC
TGGGATCTTCAACAATTTGTTAAAAAAGATGAAAGTATTTTTGCTGTTAT
TGGCTCTTTTAGCCGTAGCTCAATCAACATACCATCCCGGTAATTATGCC
AGATGGCCTCGATTTCCTGAAGAATTCAGATTCAGTTATCGTGGAACAAT
CCATGGATACCATTGTGTGAAGATTATTGAACCATCAGATCCTGTATGGA
AAAATGGTGATAATTTCTTTTGCAGTAAAGCAGGAAACGGTATCCGCAAC
CCAGGAATGGTTTGGTCTTATGCAGGTCCAAAACATGGGATGAGATGTTT
CCGCGTTTATGAACCATCTGAACCAAAACATTACAATTGGCATGATAACT
GGCTTTGTGTCCCTCACAACTCGCCCTACCATCTTCGATTCTTTAATCAC
AATGTCAAGTACTCGAAGTGCAGATGTGTTCAGTGGATCGAGCCTTCAGA
CCCTCACACTTGGAAAGATAACTTTATGTGCAACAAGGACTAAACCTATG
Taaaatcatggttgaaatatattgagggttattttaacgtttttcaagat
ttaaagttccggcgagaaagtcgattttgggctatctttttaatttaatc
gaatatttcaatttgggaggggttggcagacttccaggctttatattctg
agccttattggactgtttttgaacttttggatcctcagatcctaagctcc
taagttttaagtctagccgtaaaactcagagttaaaactctacccttcaa
acctactttagcgcacttacaaatcgattgtggtttcaaaacttcccggt
gaatttcccttttttctcaaatattacgaccttgATTGTAGATGTTACTA
ACATGGTCTTGATCTGAAATATGGAATTCTTTATTATGCATTTtctatga
aatattttttatttctcatgtaagaatttcaaaaaatcttaattagtcaa
atctatcaaaattcaaaataaaaatga Run BLAST on NCBI protein sequence of TCONS_00017917-protein >TCONS_00017917-protein ID=TCONS_00017917-protein|Name=TCONS_00017917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MKVFLLLLALLAVAQSTYHPGNYARWPRFPEEFRFSYRGTIHGYHCVKII
EPSDPVWKNGDNFFCSKAGNGIRNPGMVWSYAGPKHGMRCFRVYEPSEPK
HYNWHDNWLCVPHNSPYHLRFFNHNVKYSKCRCVQWIEPSDPHTWKDNFM
CNKD Run BLAST on NCBI transcript from alignment at sc0000279:240564..242261+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017917 ID=TCONS_00017917|Name=TCONS_00017917|organism=Clytia hemisphaerica|type=transcript|length=1698bp|location=Sequence derived from alignment at sc0000279:240564..242261+ (Clytia hemisphaerica)
GTTAATTTATGCAAGTATGCTGATAATGTTCAGTTCCCCATTTCCTTATC
GGTTCTCTTGTAAAATACATTTGTTAAGGAAGTAGTTCAAACCCCTTTCA
AGGGAGTTGAGATATGTAAAAATAGGATAGTCATGTAAAACCGTATAAAT
TGAGAAGATATTCAGCTCAAAACAGTTCTAGTCGTAAAGAAGTAAACAAC
TGGGATCTTCAACAATTTGTTAAAAAAGATGAAAGTATTTTTGCTGTTAT
TGGCTCTTTTAGCCGTAGCTCAATCAACATACCATCCCGGTAATTATGCC
AGATGGCCTCGATTTCCTGAAGAATTCAGATTCAGTTATCGTGGAACAAT
CCATGGATACCATTGTGTGAAGATTATTGAACCATCAGATCCTGTATGGA
AAAATGGTGATAATTTCTTTTGCAGTAAAGCAGGAAACGGTATCCGCAAC
CCAGGAATGGTTTGGTCTTATGCAGGTAAATACTACTTTATATTTTACGC
CTCAAGTATTTTTCTTATGTACACTTTCAGACATATGCTTCAGTAGCTGA
ATTATGGTTTGACTGAAAAGAATTAGTACGAAGGTAAAAGTTTTATAAAG
TTCAGGTTAGGCGTCCAGACCCAGTGGAAATTTCCCTCCACTTTCCCTCC
ACTAAATAGATCTGACCAGAAccgttttaaaaaaatcatcatcaaatCTT
CCCTAGTGGAGACAAAACCGTTTAAATTTAGTTCTCGTattaaaattttc
tataaaaCAATTTCTCAAACATTGGGACTCGCtttcatcagtaaaatcaa
aaaggggTACATAAGTGGCTCTTAGGTATGAAATTGTCGTCTTTATAACT
CTATAACTTGTTATTGATTCATTTTCTAGTAGAACGGTTAAAGGTGGATG
CGTATAGCACCCCCCCCCCTATAGCGTAAGAAGACAGTTTTTTGGAGCTG
CaaatctgaaaatgagttttaactcttgtttttttctttccaacagGTCC
AAAACATGGGATGAGATGTTTCCGCGTTTATGAACCATCTGAACCAAAAC
ATTACAATTGGCATGATAACTGGCTTTGTGTCCCTCACAACTCGCCCTAC
CATCTTCGATTCTTTAATCACAATGTCAAGTACTCGAAGTGCAGATGTGT
TCAGTGGATCGAGCCTTCAGACCCTCACACTTGGAAAGATAACTTTATGT
GCAACAAGGACTAAACCTATGTaaaatcatggttgaaatatattgagggt
tattttaacgtttttcaagatttaaagttccggcgagaaagtcgattttg
ggctatctttttaatttaatcgaatatttcaatttgggaggggttggcag
acttccaggctttatattctgagccttattggactgtttttgaacttttg
gatcctcagatcctaagctcctaagttttaagtctagccgtaaaactcag
agttaaaactctacccttcaaacctactttagcgcacttacaaatcgatt
gtggtttcaaaacttcccggtgaatttcccttttttctcaaatattacga
ccttgATTGTAGATGTTACTAACATGGTCTTGATCTGAAATATGGAATTC
TTTATTATGCATTTtctatgaaatattttttatttctcatgtaagaattt
caaaaaatcttaattagtcaaatctatcaaaattcaaaataaaaatga Coding sequence (CDS) from alignment at sc0000279:240564..242261+ >TCONS_00017917 ID=TCONS_00017917|Name=TCONS_00017917|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at sc0000279:240564..242261+ (Clytia hemisphaerica)
ATGAAAGTATTTTTGCTGTTATTGGCTCTTTTAGCCGTAGCTCAATCAAC
ATACCATCCCGGTAATTATGCCAGATGGCCTCGATTTCCTGAAGAATTCA
GATTCAGTTATCGTGGAACAATCCATGGATACCATTGTGTGAAGATTATT
GAACCATCAGATCCTGTATGGAAAAATGGTGATAATTTCTTTTGCAGTAA
AGCAGGAAACGGTATCCGCAACCCAGGAATGGTTTGGTCTTATGCAGGTC
CAAAACATGGGATGAGATGTTTCCGCGTTTATGAACCATCTGAACCAAAA
CATTACAATTGGCATGATAACTGGCTTTGTGTCCCTCACAACTCGCCCTA
CCATCTTCGATTCTTTAATCACAATGTCAAGTACTCGAAGTGCAGATGTG
TTCAGTGGATCGAGCCTTCAGACCCTCACACTTGGAAAGATAACTTTATG
TGCAACAAGGACTAAATGAAAGTATTTTTGCTGTTATTGGCTCTTTTAGC
CGTAGCTCAATCAACATACCATCCCGGTAATTATGCCAGATGGCCTCGAT
TTCCTGAAGAATTCAGATTCAGTTATCGTGGAACAATCCATGGATACCAT
TGTGTGAAGATTATTGAACCATCAGATCCTGTATGGAAAAATGGTGATAA
TTTCTTTTGCAGTAAAGCAGGAAACGGTATCCGCAACCCAGGAATGGTTT
GGTCTTATGCAGGTCCAAAACATGGGATGAGATGTTTCCGCGTTTATGAA
CCATCTGAACCAAAACATTACAATTGGCATGATAACTGGCTTTGTGTCCC
TCACAACTCGCCCTACCATCTTCGATTCTTTAATCACAATGTCAAGTACT
CGAAGTGCAGATGTGTTCAGTGGATCGAGCCTTCAGACCCTCACACTTGG
AAAGATAACTTTATGTGCAACAAGGACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017917-exon-sc0000279-1491911889:240564..241038 | TCONS_00017917-exon-sc0000279-1491911889:240564..241038 | Clytia hemisphaerica | exon |
| TCONS_00017917-exon-sc0000279-1510915933:240564..241038 | TCONS_00017917-exon-sc0000279-1510915933:240564..241038 | Clytia hemisphaerica | exon |
| TCONS_00017917-exon-sc0000279-1575043694:240564..241038 | TCONS_00017917-exon-sc0000279-1575043694:240564..241038 | Clytia hemisphaerica | exon |
| TCONS_00017917-exon-sc0000279-1491911889:241560..242261 | TCONS_00017917-exon-sc0000279-1491911889:241560..242261 | Clytia hemisphaerica | exon |
| TCONS_00017917-exon-sc0000279-1510915933:241560..242261 | TCONS_00017917-exon-sc0000279-1510915933:241560..242261 | Clytia hemisphaerica | exon |
| TCONS_00017917-exon-sc0000279-1575043694:241560..242261 | TCONS_00017917-exon-sc0000279-1575043694:241560..242261 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000279 | supercontig | sc0000279:240564..242261 + |
Blast
The following BLAST results are available for this feature:
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