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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017939 ID=TCONS_00017939|Name=TCONS_00017939|organism=Clytia hemisphaerica|type=transcript|length=1631bp
acgatatcggcttaacatgaaaactcagatttgatccctgagaattcccc
acaatgctttgcacGGAAAATATTTCACCGCtaacttttttccgcgcaaa
gcattgtaggtaattctcggggatcaaatctgagttttcatgttaagccg
atatcgtctattgcatTTAGTCAGGGACTTTTCAAAAGATGTCTGTTCAG
GTGTGGTCCTTTAAGAAAGGGTTGTCAATTTTTTATGGGTTGGGTTTTAG
TCGAAGGAAATAAGGTGACCAATTCAAATTTTGGATATCTTTCGATGTAT
GTACAGTATAAGTATCATATAAACAAAATCGAAGATAAAATATAAGAAAG
TCAATAGCATTAAAGCAGTTATAGAAAGATTAGAAGATCTAAGAATTGAG
GATTTCTAatatacccctgtgtcacagacccgagGGGCCGTAGTCCCGCT
GGAAAGTTTCGTTAGAATTTCCTCAACTGGGAAATTGGCTTTGATTTTAT
CCTCCTCATTCCAacttcaatgtaaaaaattgttCTCCAAAACACCATCT
CCACTTGATTTTTTAGGCTTGGAGCAATTTCTATAACATACCCATTTGAT
TTCAATAAAATGTTTTATCGCTGCTGTGGGacaaagttccaccggggcga
gacaggggtgttattatTAAGTAAAAAGTATGAACAAATAAGCTAAACGG
TTTTATAGGCTACGGTGACCAAAATCTTAAACATTTATCAATCAACGTAA
AAAGGATTGGGTACGACACACTATACAGTAGTATCCGATTGCACGTTTTG
TAGAACTTCGATTTTAGTATCATCTTTAGGACTTTCAATGTTTTGTCGTT
CGTTTTGATCAGTCTTTTCAATTGTCTCTTTCTTTCCAGAAATGTCGTTA
AGATTTTCCCCATTATCGGTTTTAGCTTCGGCTTCCGGTGTTTTCGAGGA
ATCAGGATCCGTGTTTTTATGCACTGGTTGAGCAGAGGGCTCATTGGTTT
CCGAAGGTTTGttattttttaccccctgactttcaggtttttgattttgt
acaGTTTCCAAAGGTTTTAAGGAAACGTTCTCCTCCGGTTTTGGTTTTGT
TACAGAGGCATTTTCATAGTTATTTAACGGCTTGTCGATGTTTTGTTTGT
CTGACTTAGAATCTTGTTTTTCCTGTAAAGGCTCGTCAATtaataaatct
ttttcatttgaattagGAGTCTCCGCTATAATGTCATTGTCCTCATCTAT
TTTCGATTTCTCATTTTGTATGTCTTCGCTTTTAGCTCGATCTTTTATGA
TTTCTTGGGAGGGATCATGATCATTCTTTTGTGAGTGATTAGGTTCTTCC
TCTGGCTCAGGAACCTCACGGATGGACATCAAACATCCATTCTCATCTTC
AAAATTGATCTGAGGTATTTGTTCTTCCGGCGTTTTAGCTTTCTTTTCCT
TCGACGGTAGATTAGTGTTCTCGTCACTTTCAAGATTGATAAATAATGTA
TCACCTTTAGAGCTAGGTTTATTGTCTGCGCTATCGACTCCTTCCTCAGC
CACAATAAGGTTTATTGTTTCGGTATTTTCAGTTGTCGCGCGGCCATTTG
ATTTCACTGCAGCATACTTGATAGCTTCTGA Run BLAST on NCBI transcript from alignment at sc0000279:110191..111854- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017939 ID=TCONS_00017939|Name=TCONS_00017939|organism=Clytia hemisphaerica|type=transcript|length=1664bp|location=Sequence derived from alignment at sc0000279:110191..111854- (Clytia hemisphaerica)
ACGATATCGGCTTAACATGAAAACTCAGATTTGATCCCTGAGAATTCCCC
ACAATGCTTTGCACGGAAAATATTTCACCGCTAACTTTTTTCCGCGCAAA
GCATTGTAGGTAATTCTCGGGGATCAAATCTGAGTTTTCATGTTAAGCCG
ATATCGTCTATTGCATTTAGTCAGGGACTTTTCAAAAGATGTCTGTTCAG
GTGTGGTCCTTTAAGAAAGGGTTGTCAATTTTTTATGGGTTGGGTTTTAG
TCGAAGGAAATAAGGTGACCAATTCAAATTTTGGATATCTTTCGATGTAT
GTACAGTATAAGTATCATATAAACAAAATCGAAGATAAAATATAAGAAAG
TCAATAGCATTAAAGCAGTTATAGAAAGATTAGAAGATCTAAGAATTGAG
GATTTCTAATATACCCCTGTGTCACAGACCCGAGGGGCCGTAGTCCCGCT
GGAAAGTTTCGTTAGAATTTCGTCCCCGTTGGGAAAAATACCCTACAATT
TTAGCTCAACTGGGAAATTGGCTTTGATTTTATCCTCCTCATTCCAACTT
CAATGTAAAAAATTGTTCTCCAAAACACCATCTCCACTTGATTTTTTAGG
CTTGGAGCAATTTCTATAACATACCCATTTGATTTCAATAAAATGTTTTA
TCGCTGCTGTGGGACAAAGTTCCACCGGGGCGAGACAGGGGTGTTATTAT
TAAGTAAAAAGTATGAACAAATAAGCTAAACGGTTTTATAGGCTACGGTG
ACCAAAATCTTAAACATTTATCAATCAACGTAAAAAGGATTGGGTACGAC
ACACTATACAGTAGTATCCGATTGCACGTTTTGTAGAACTTCGATTTTAG
TATCATCTTTAGGACTTTCAATGTTTTGTCGTTCGTTTTGATCAGTCTTT
TCAATTGTCTCTTTCTTTCCAGAAATGTCGTTAAGATTTTCCCCATTATC
GGTTTTAGCTTCGGCTTCCGGTGTTTTCGAGGAATCAGGATCCGTGTTTT
TATGCACTGGTTGAGCAGAGGGCTCATTGGTTTCCGAAGGTTTGTTATTT
TTTACCCCCTGACTTTCAGGTTTTTGATTTTGTACAGTTTCCAAAGGTTT
TAAGGAAACGTTCTCCTCCGGTTTTGGTTTTGTTACAGAGGCATTTTCAT
AGTTATTTAACGGCTTGTCGATGTTTTGTTTGTCTGACTTAGAATCTTGT
TTTTCCTGTAAAGGCTCGTCAATTAATAAATCTTTTTCATTTGAATTAGG
AGTCTCCGCTATAATGTCATTGTCCTCATCTATTTTCGATTTCTCATTTT
GTATGTCTTCGCTTTTAGCTCGATCTTTTATGATTTCTTGGGAGGGATCA
TGATCATTCTTTTGTGAGTGATTAGGTTCTTCCTCTGGCTCAGGAACCTC
ACGGATGGACATCAAACATCCATTCTCATCTTCAAAATTGATCTGAGGTA
TTTGTTCTTCCGGCGTTTTAGCTTTCTTTTCCTTCGACGGTAGATTAGTG
TTCTCGTCACTTTCAAGATTGATAAATAATGTATCACCTTTAGAGCTAGG
TTTATTGTCTGCGCTATCGACTCCTTCCTCAGCCACAATAAGGTTTATTG
TTTCGGTATTTTCAGTTGTCGCGCGGCCATTTGATTTCACTGCAGCATAC
TTGATAGCTTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017939-exon-sc0000279-1575043694:111384..111854 | TCONS_00017939-exon-sc0000279-1575043694:111384..111854 | Clytia hemisphaerica | exon |
| TCONS_00017939-exon-sc0000279-1575043694:110191..111350 | TCONS_00017939-exon-sc0000279-1575043694:110191..111350 | Clytia hemisphaerica | exon |
| TCONS_00017939-exon-sc0000279-1510915933:111384..111854 | TCONS_00017939-exon-sc0000279-1510915933:111384..111854 | Clytia hemisphaerica | exon |
| TCONS_00017939-exon-sc0000279-1510915933:110191..111350 | TCONS_00017939-exon-sc0000279-1510915933:110191..111350 | Clytia hemisphaerica | exon |
| TCONS_00017939-exon-sc0000279-1491911889:111384..111854 | TCONS_00017939-exon-sc0000279-1491911889:111384..111854 | Clytia hemisphaerica | exon |
| TCONS_00017939-exon-sc0000279-1491911889:110191..111350 | TCONS_00017939-exon-sc0000279-1491911889:110191..111350 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000279 | supercontig | sc0000279:110191..111854 - |
Blast
The following BLAST results are available for this feature:
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