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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017946 ID=TCONS_00017946|Name=TCONS_00017946|organism=Clytia hemisphaerica|type=transcript|length=1711bp
TTTATCGATAAACAGCCTTATAGTttttaacaataaaatgtaTCGATATA
ATTTTTAATAATCTTTCAAAAAGACTGATCACTAAGATCATTATCGCTTG
AAAATCTTTGACCATAAAAGGATAAATTTACTTTCCATTAAACGggtaaa
aagatttttggagCAACGTGCAAACACAACACTTTTGTTTGGAGCAATGA
GGCAAACGAAACTCGATAAGTCAANCAAACACAACACTTTTGTTTGGAGC
AATGAGGCAAACGAAACTCGATAAGTCAAGAAATTCATAAACCTACATGT
ATAAAAAGACCactaaattttaacaaaacaccaaacactggTTCAAAGCT
GGCGAAGAACAGTAAAATGGCGCTAACAGGAAGTCAAATCTTCATATTCA
TCTGCATACAATGGTTTGCGTATACATCAGCCACTGGCAATGAAACAGTA
GATGTCTTGATTGACCAATCAATTTCCAATCTCCAGAAAATCAAACTAAA
GATGAAGTTACTTTCCCTGCTCAAAAAGATGTATGGTGATTGCTTGCCAT
GTAGATCAATCTTTAATAGCAAAAGCTGTGATTGTACAGCCATCACACCG
ATGAAAGATTGTCTGGAGTTTTTACAGAACGGCTACACCAAGAATGGAAT
CTACAAAGTAACACAGAAAGAAAACGTCTACTGCGATCAAACCACTCAAA
ATGGTGGCTGGACAGTTTTCTTAAGGAGACAAGATGGATCAACAGACTTC
AAACAGAACTGGCTGGACTACAAATATGGTTTTGGTAAGCTGACCAGTGA
ATTTTGGCTTGGAAATGAAATGGTCCATGATTTGACCAAACCATCAGTGG
CTCCAAAGAAGTCAGAGCTGTTGATCAACATGCGAATGAAAGGACAAACC
AAACTAGTTTTCGCCAAATACGACACTTTTGAAATTGGAGATGAGGTGAG
CAAATACACATTGAAGATCAGCGGTGTGTCAGGCGATGCCAATGATTTGA
CTGCCCTTAGTTACCATAACAATACGAAATTTTCAACGTATGATCAAGAT
AATGACAATTCTGGAGGGGATTGTTCAAATAACTGGGAAGGAACTGGGTG
GTGGTTTAATAATTGCTTGGAAACACTTTTAACTGCTATTCTTTCTGACG
GTAATGCGTATTGGACTATTCCTGGCATAGCAACTTTTGTAGAAATGAAA
TTTAGACGCAATGTCTGATGATAATCTAACTTGAGTATATTTAAAACTCT
CTCTgaaagaaacaaataaaattcattGTTTTACGACATGAGGCCGCAAC
ATGagtttcagtttgagtttacCAATTTCGCACAACGAACANgtgttata
atgttattggaatttgataaagtttacaaaagtacagctactgtctaaat
ttgataaagactggatgcaatcgtgcttttttggacttgttggtggtttg
gacgtgtttgataaggcgaatcgcaaaaaattgtttggttcccgtcattt
ctactttaaaaagtgggggtaaTTCGGTCGgtcagtcgaaaatatttttc
ttttaagaagcagctaccgtaacttggtctaatgtcgacatccctcctct
aattccgacaccctttttatcagctgaaattgatagaaaggctgaaactg
tttttctttgcttagtggtcagagaggaataatcctttttcaatcagtga
ttcaagctttc Run BLAST on NCBI protein sequence of TCONS_00017946-protein >TCONS_00017946-protein ID=TCONS_00017946-protein|Name=TCONS_00017946-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MALTGSQIFIFICIQWFAYTSATGNETVDVLIDQSISNLQKIKLKMKLLS
LLKKMYGDCLPCRSIFNSKSCDCTAITPMKDCLEFLQNGYTKNGIYKVTQ
KENVYCDQTTQNGGWTVFLRRQDGSTDFKQNWLDYKYGFGKLTSEFWLGN
EMVHDLTKPSVAPKKSELLINMRMKGQTKLVFAKYDTFEIGDEVSKYTLK
ISGVSGDANDLTALSYHNNTKFSTYDQDNDNSGGDCSNNWEGTGWWFNNC
LETLLTAILSDGNAYWTIPGIATFVEMKFRRNV Run BLAST on NCBI transcript from alignment at sc0000279:327871..333531- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017946 ID=TCONS_00017946|Name=TCONS_00017946|organism=Clytia hemisphaerica|type=transcript|length=5661bp|location=Sequence derived from alignment at sc0000279:327871..333531- (Clytia hemisphaerica)
TTTATCGATAAACAGCCTTATAGTTTTTAACAATAAAATGTATCGATATA
ATTTTTAATAATCTTTCAAAAAGACTGATCACTAAGATCATTATCGCTTG
AAAATCTTTGACCATAAAAGGATAAATTTACTTTCCATTAAACGGGTAAA
AAGATTTTTGGAGCAACGTGCAAACACAACACTTTTGTTTGGAGCAATGA
GGCAAACGAAACTCGATAAGTCAANCAAACACAACACTTTTGTTTGGAGC
AATGAGGCAAACGAAACTCGATAAGTCAAGAAATTCATAAACCTACATGT
ATAAAAAGACCACTAAATTTTAACAAAACACCAAACACTGGTTCAAAGCT
GGCGAAGAACAGTAAAATGGCGCTAACAGGAAGTCAAATCTTCATATTCA
TCTGCATACAATGGTTTGCGTATACATCAGCCACTGGCAATGAAACAGTA
GATGTCTTGATTGACCAATCAATTTCCAATCTCCAGAAAATCAAACTAAA
GATGAAGTTACTTTCCCTGCTCAAAAAGATGTATGGTGATTGCTTGCCAT
GTAGATCAATCTTTAATAGCAAAAGCTGTGATTGTACAGCCATCACACCG
ATGAAAGATTGTCTGGAGTTTTTACAGAACGGCTACACCAAGAATGGAAT
CTACAAAGTAACACAGAAAGAAAACGTCTACTGCGATCAAACCACTCAAA
ATGGTGGCTGGACAGTTTTCTTAAGGAGACAAGATGGATCAACAGACTTC
AAACAGAACTGGCTGGACTACAAATATGGTTTTGGTAAGCTGACCAGTGA
ATTTTGGCTTGGAAATGAAATGGTCCATGATTTGACCAAACCATCAGTGG
CTCCAAAGAAGTCAGAGCTGTTGATCAACATGCGAATGAAAGGACAAACC
AAACTAGTTTTCGCCAAATACGACACTTTTGAAATTGGAGATGAGGTGAG
CAAATACACATTGAAGATCAGTGGTGTATCAGGCGATGCATCTCATTTAA
CTGGATCAAGTTCTTTTCTTGGTTATCATAACAACATGAAGTTTTCAACG
TATGATCAGGATAATGACAAGTATTCTGGCCATTGTTCGTCTAGATACAG
AGTTGGTTGGTGGTTCAAAAGTTGTTATAACACGCTTTTGACTGGTAATT
ACAAATTTACAAAGGATAACGGTAATATCTATTGGGTTGGTAGTAACCAA
CCCGAANCTGGTAATTACAAATTCACGGGACACAGCAATGGCGAGATCTC
TTGGAATAATAATCCCGGTGATGTCGAACCCAAGTTTGTCCAAATGATGA
TGCGCCGTAAGCTCTAATCATTAAAAAGTAAGTTCATTTTATAGATTACG
AGATGATTTCAAAATCTTTTAAATCAAAATAAGAAAAGAATTTTTAATAA
AAACTTCAACCACAGCGTCAACATTCGGATTTTTGACATCGCACACGTAA
CAAAATTCTTCTTATGACTTGATTTTTTTCCTCTGATGGTTCAATTTGAA
GCAACTTCAAAAATTTACCGTGCACTTTAGAAAATTGTGGCCATTTGTTA
TCAGGTTATTTAAAAATTTGTTTTGCTAAATAGGTTTTTTGGGCTATTTT
TTGATTGGGTCAATCCTAAAATTTCCTCTGTTGGATTCTCTATCCCTAAA
TCCACCTTAATTTTGATAACATCATCGGACGTTCAGAAAATCGGACAGTT
TCAATACATATATAACTTGTAAAATTACTCTTTTTTTCAGAACAACCTCA
AAATCGTGGACGCGAAGCAATGAAAACATTGATAAAGAAGTTCAAACGAT
CAGATGAGAATCAATACAATCATATTTTAATCTAATTTTCTAAGAAATTG
TATGTTTCAAACTCTGAAAAAACTTGAATGTTCTTAAAATGTTCTTAAAT
TTATAGCTTAGATATCGTATGTTCTTATTATATAATCATATTGTTTTTTT
TCGTTCTTTCGGTTAAATTTTTTTTGCAAGAACGTCTGAAGATTTTGAAA
CCTTCAGACCGTGGGTTTTAAGTCTAAAAAATGTTCGTAGTATGCTCCTA
TTTTTAGTCCAATTTTCTAAAAAAAAATTGGATGTTTTAGAATATGAAAA
AACTTTCACGTTGTTTCTAGAATTTTCTTAATTCTACCTAAGGTACTAGC
CTTTGCAGGACCTTAACCCTAAGAATCAACTTATTAAGTGACTTTGCTTG
GAGACTTGCGTTATCTTGCACGACCAAGGAGACCTATTTTGAATTGTTAG
ATTACAAGTGTAATGAAAGCGCATAGAAATAAAGCATGTGCACGTCTGAC
GTTTCGGAAAAGTAAGACTTGAAAGTCAGTCAATTTACGAAATTTACCAC
AGTGAAGACCTAGACGAATTGTTTAGATCTAACAATGCATGCACGTCAGA
CGCTTCGGAAATGTTGGACGTGAAAGTCCGTCAATTTCGAATTTGACGGT
AGTGAAAACCTGACGATTTCAGGTCTACATACATTGCGATACTTGCCCAT
TTTTTTATAGATTAGGGGTTGTCATTATAAAATATAACTATCGGCATCAT
CGATGCTACCGGTTTTCAAATGAATCTCTTTACAAAAATGTCTAACTAAA
TTTTGAACATTGCCATTTATGTTGACGATAAGTTTATATACGGTTGACCC
AAAGCTAATACCACGATATTTTCTCGGATATTTCGAAAATCTCTCTTAGA
CCCGTTATTTCAGTAAAAAAAATTTGGATATCGTTATTTTGAATCAGTTT
GTAAAAAATTAGAAAAACCCAATGACCTAATCCCTAAAAAAAATCGTAAC
AGACCTAACAGAACGAACAGATAGGCGAACGAAAGAACGAAAAACGGTTA
TGATTTGTAGGACCTTAAAGCCAAAAGTTATAATTAAGATTTTAGCGAAT
AAGACTATTTTACTCAGTAGATCATAAGTTTTCCTTTTTATTCAAATTCA
GTGACTAAAGCTAAATAAAAAGAGGCACACCACGTAATCCTTGCTCAACA
AAAGTTTGCTAAACGGTAGCGTTTTTATGGGTTGATTCACAACCTTTATA
ACATAAACTTTTCAGGGATAAAGGAACTGTTTCGCAAAGAAAGGCTCCAA
AGTTTGTCTCAAATGTCTCAATATGTAGACACTTTACTTTTTTTTGATAA
TTTCTCAGCACCCATTAATGCTATGTTAAAACAAACTAGATACTCTGAAT
GGACATACCTAATGATGAAAGTTAGATAGCAATAAGGAGAAAAACGAAAA
CAATCAGTCAGAAAATATAGCGTTTAGCGAAAATGCATAGCGCATTAAAT
TTCATCATTGATTGTTGACAGGGGAAAGGGAAGGGGAGTGTGTTAATTTA
AAGGACCTTCGAGGTAGGTTCAAAAAGCTATACACCGTTGGAATGATAAT
TTCCAGGAGAATTATCAAATATTATTGAAAATTTCCGTTGAATCGAAAAT
TGAAGATGAAAAACTTAAGATTCAAAAATAGTGACAACAACAAGCTGAAA
ACAGATTTGAAATCGGCGAAGTTCAAATATTCTAAAAAGTATATTATGTC
ATGAAACCAGTAGTTTCATCTGTATTTTTCGTCTCCAATTTTCAATATAT
TTGATAGTTCTCCTTGAGAATATCTTTCCAACAGTGTATAACCTCTTATC
ATACCATAAATCATGTATCATAACAAACTTGCAGGACTTTAATATGGATT
TCTAAAACTTCACAATTGTTTCAATTGTTTCAAGATCCAGTGAGATGATG
AGTTTTGAGGGTTTTACTTTATACAAAATTTGTTCACAACTCATTCACCA
AACGATAATACTTCTTTATCTAATTCCTTATGATGACTTTATTTCGCCGC
AGAATCAACCATTTGGGTTTCAGTTCTGTTGTGACTCAATGTTTTAAAAA
GTTTGTTAGAAAAGAAGAGAAATTACACTAATGTAGATGTTCATTTATGA
GATTGGCTAAATTCTAAGACCACGCTACATGGAGATTTTTACCGTTTAAT
TTGCGGCTAAAATTTAATTCGAATGCATCTTTGTCATTGGTAAAATGCCA
ATTTTTTTGTTCTTTCTTTGGCACTGTGTACAAATGACAAAGACAAAGCA
TTCCAATTAAACTGTAGCCGCAAATTAAACGGCAAAAGTTTTTGAAACGT
TCCAAACCAACATTATTGTTTGGAGCAATAAGGCAAACGAAACTCGATAC
GTCAAGAAATTCATAAACCTACATGTATAAAAAGACCACTAAATTTCAAC
AAAACACCTAACACTGGTTCAAAGCTGGCGAAGGACAGTAAAATGGCGCT
AACAGGAAGTCAAATCTTCATATTCATCTGCATACAATGGTTTGCGTATA
CATCAGCCACTGGTAATGAAACAGTAGATGTCTTAGTTGACCGATCAATT
TCCAATCTCCAGAAAATCAAACTGACCTACAAACTGAAGTTAAAATCGAT
AGCTCTCATAAAGAAATTATACGGACATTGTGCTCCTTGTAAGTTGATCC
CTAAGAGCGAATACTGCGACTGTACATTTGCTGACCCTATGAAAGATTGT
CTGGAGTTTCGACAAGCTGGCAATCAAGTTAATCGCTTTTATCAGCTGGT
GGGGCCTGTATTTAACAGACCACGAGTGTTCTGTGATCAAGCTACCCAAG
GTGGAGGATGGACGGTATATCTCAGAAGAGAAGGCGGATCCTTAGACTTT
AAACAGAACTGGAATAACTACAAATATGGTTTTGGAGAGTTAGCCAATGA
ATTCTAACTTGGAAATGAAATAGTCCATGATTTGACCAAAGAATCGATGG
CACCGAATAAATCAGAGCTGTTGATCAACATGCGAATGAAAGGACAAACA
AAACCAGTTTATGCAAAATACGACACTTTTGAAATTGGAGATGAGGCGAG
CAAATACACATTGAAGATCAGCGGTGTGTCAGGCGATGCCAATGATTTGA
CTGCCCTTAGTTACCATAACAATACGAAATTTTCAACGTATGATCAAGAT
AATGACAATTCTGGAGGGGATTGTTCAAATAACTGGGAAGGAACTGGGTG
GTGGTTTAATAATTGCTTGGAAACACTTTTAACTGCTATTCTTTCTGACG
GTAATGCGTATTGGACTATTCCTGGCATAGCAACTTTTGTAGAAATGAAA
TTTAGACGCAATGTCTGATGATAATCTAACTTGAGTATATTTAAAACTCT
CTCTGAAAGAAACAAATAAAATTCATTGTTTTACGACATGAGGCCGCAAC
ATGAGTTTCAGTTTGAGTTTACCAATTTCGCACAACGAACANGTGTTATA
ATGTTATTGGAATTTGATAAAGTTTACAAAAGTACAGCTACTGTCTAAAT
TTGATAAAGACTGGATGCAATCGTGCTTTTTTGGACTTGTTGGTGGTTTG
GACGTGTTTGATAAGGCGAATCGCAAAAAATTGTTTGGTTCCCGTCATTT
CTACTTTAAAAAGTGGGGGTAATTCGGTCGGTCAGTCGAAAATATTTTTC
TTTTAAGAAGCAGCTACCGTAACTTGGTCTAATGTCGACATCCCTCCTCT
AATTCCGACACCCTTTTTATCAGCTGAAATTGATAGAAAGGCTGAAACTG
TTTTTCTTTGCTTAGTGGTCAGAGAGGAATAATCCTTTTTCAATCAGTGA
TTCAAGCTTTC Coding sequence (CDS) from alignment at sc0000279:327871..333531- >TCONS_00017946 ID=TCONS_00017946|Name=TCONS_00017946|organism=Clytia hemisphaerica|type=CDS|length=1704bp|location=Sequence derived from alignment at sc0000279:327871..333531- (Clytia hemisphaerica)
ATTGAAGATCAGCGGTGTGTCAGGCGATGCCAATGATTTGACTGCCCTTA
GTTACCATAACAATACGAAATTTTCAACGTATGATCAAGATAATGACAAT
TCTGGAGGGGATTGTTCAAATAACTGGGAAGGAACTGGGTGGTGGTTTAA
TAATTGCTTGGAAACACTTTTAACTGCTATTCTTTCTGACGGTAATGCGT
ATTGGACTATTCCTGGCATAGCAACTTTTGTAGAAATGAAATTTAGACGC
AATGTCTGAATGGCGCTAACAGGAAGTCAAATCTTCATATTCATCTGCAT
ACAATGGTTTGCGTATACATCAGCCACTGGCAATGAAACAGTAGATGTCT
TGATTGACCAATCAATTTCCAATCTCCAGAAAATCAAACTAAAGATGAAG
TTACTTTCCCTGCTCAAAAAGATGTATGGTGATTGCTTGCCATGTAGATC
AATCTTTAATAGCAAAAGCTGTGATTGTACAGCCATCACACCGATGAAAG
ATTGTCTGGAGTTTTTACAGAACGGCTACACCAAGAATGGAATCTACAAA
GTAACACAGAAAGAAAACGTCTACTGCGATCAAACCACTCAAAATGGTGG
CTGGACAGTTTTCTTAAGGAGACAAGATGGATCAACAGACTTCAAACAGA
ACTGGCTGGACTACAAATATGGTTTTGGTAAGCTGACCAGTGAATTTTGG
CTTGGAAATGAAATGGTCCATGATTTGACCAAACCATCAGTGGCTCCAAA
GAAGTCAGAGCTGTTGATCAACATGCGAATGAAAGGACAAACCAAACTAG
TTTTCGCCAAATACGACACTTTTGAAATTGGAGATGAGGTGAGCAAATAC
ACATTGAAGATCAGCGGTGTGTCAGGCGATGCCAATGATTTGACTGCCCT
TAGTTACCATAACAATACGAAATTTTCAACGTATGATCAAGATAATGACA
ATTCTGGAGGGGATTGTTCAAATAACTGGGAAGGAACTGGGTGGTGGTTT
AATAATTGCTTGGAAACACTTTTAACTGCTATTCTTTCTGACGGTAATGC
GTATTGGACTATTCCTGGCATAGCAACTTTTGTAGAAATGAAATTTAGAC
GCAATGTCTGAATGGCGCTAACAGGAAGTCAAATCTTCATATTCATCTGC
ATACAATGGTTTGCGTATACATCAGCCACTGGCAATGAAACAGTAGATGT
CTTGATTGACCAATCAATTTCCAATCTCCAGAAAATCAAACTAAAGATGA
AGTTACTTTCCCTGCTCAAAAAGATGTATGGTGATTGCTTGCCATGTAGA
TCAATCTTTAATAGCAAAAGCTGTGATTGTACAGCCATCACACCGATGAA
AGATTGTCTGGAGTTTTTACAGAACGGCTACACCAAGAATGGAATCTACA
AAGTAACACAGAAAGAAAACGTCTACTGCGATCAAACCACTCAAAATGGT
GGCTGGACAGTTTTCTTAAGGAGACAAGATGGATCAACAGACTTCAAACA
GAACTGGCTGGACTACAAATATGGTTTTGGTAAGCTGACCAGTGAATTTT
GGCTTGGAAATGAAATGGTCCATGATTTGACCAAACCATCAGTGGCTCCA
AAGAAGTCAGAGCTGTTGATCAACATGCGAATGAAAGGACAAACCAAACT
AGTTTTCGCCAAATACGACACTTTTGAAATTGGAGATGAGGTGAGCAAAT
ACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017946-exon-sc0000279-1575043694:332573..333531 | TCONS_00017946-exon-sc0000279-1575043694:332573..333531 | Clytia hemisphaerica | exon |
| TCONS_00017946-exon-sc0000279-1575043694:327871..328622 | TCONS_00017946-exon-sc0000279-1575043694:327871..328622 | Clytia hemisphaerica | exon |
| TCONS_00017946-exon-sc0000279-1510915933:332573..333531 | TCONS_00017946-exon-sc0000279-1510915933:332573..333531 | Clytia hemisphaerica | exon |
| TCONS_00017946-exon-sc0000279-1510915933:327871..328622 | TCONS_00017946-exon-sc0000279-1510915933:327871..328622 | Clytia hemisphaerica | exon |
| TCONS_00017946-exon-sc0000279-1491911889:332573..333531 | TCONS_00017946-exon-sc0000279-1491911889:332573..333531 | Clytia hemisphaerica | exon |
| TCONS_00017946-exon-sc0000279-1491911889:327871..328622 | TCONS_00017946-exon-sc0000279-1491911889:327871..328622 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000279 | supercontig | sc0000279:327871..333531 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00017946 vs. Swiss-Prot (Human)
Match: TENR (Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3) HSP 1 Score: 134.035 bits (336), Expect = 1.183e-32 Identity = 87/219 (39.73%), Postives = 121/219 (55.25%), Query Frame = 1
Query: 604 KDCLEFLQNGYTKNGIYKV------TQKENVYCDQTTQNGGWTVFLRRQDGSTDFKQNWLDYKYGFGKLTSEFWLGNEMVHDLTKPSVAPKKSELLINMRMKGQTKLVFAKYDTFEIGDEVSKYTLKISGVSGDANDLTALSYHNNTKFSTYXXXXXXXXXXXXXXWEGTGWWFNNCLETLLTAILSDGNA-------YW-----TIPGIATFVEMKFR 1206
+DC + L NG T +G+Y + +QK VYCD TT GGW VF RRQ+G TDF + W DY+ GFG + EFWLG + +H +T + + EL ++MR GQ + FA YD F + D + Y L+I +G A D +LSYH FST D+DND + +C+ +++G WW+ NC T L + +W +IP FVEMK R
Sbjct: 1136 QDCAQHLMNGDTLSGVYPIFLNGELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKWADYRVGFGNVEDEFWLGLDNIHRIT----SQGRYELRVDMR-DGQ-EAAFASYDRFSVEDSRNLYKLRIGSYNGTAGD--SLSYHQGRPFSTEDRDNDVAVTNCAMSYKG-AWWYKNCHRTNLNGKYGESRHSQGINWYHWKGHEFSIP----FVEMKMR 1341
The following BLAST results are available for this feature:
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