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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017958 ID=TCONS_00017958|Name=TCONS_00017958|organism=Clytia hemisphaerica|type=transcript|length=970bp
GTAGCACTACAAAATTCATCAAAAGCCCAGCTATTTTGAACAAGAATGGA
CAAAGAATCACTGATATCATACCTGGAGCAATAGTCGATTCTTGGATAGA
CTTTTGTATGTTTTTAGAAGTTTCAGAATTTATTTGGCATCCAATGCTGC
CAGAGATTCCATTCAAAACAAATACCACAAGTCAACTTCATGATAAGGAA
GGAATCACAGATAATCTTTATCGCCGAATCTATGCCTATATGCACGTGCC
TGAAGATGGCTCTTACGACTTCAAATTAGGGTCGAGAGATGGTGCCGAGG
TCCTGATTCACgatacaaaaaagttaatttcggATCTAGACGATATTCAA
TTATCATATGATAGATCACGAGAGACTGCATATTTGAAAATTAATGCTGA
AGTTATTGGCAAGTTGGATCCAGAACAAAGCAAAATTTCTACAGAAAAGT
TGTACGAAATTGAATCTAAAGACATAAAGATGTTTAAAAATCGTGTTTAT
TTTATCGAGATTTTACAAGGTGGTAAGATGTTTGTCAAGTATAGCTTTCA
GATGAAGAAATCTGGGTTAGCTGACGAATCGTATACAGTTGTTGCAGCTC
CAAGCGTGTTTCACACAAAGTTAATGTCTTCCGAAAATACACCGtctctt
ataaaacaaaaatataaccCACAAAAAATTCCATTTAAAGAATCAGAAAA
ACCAAGACttgaattttataaaaatgaagtaTTACGAAGCAATGAATTAA
TAGAAAAAACAAATCTAACTTGCAGTCCACCTGTTCAAAAACAATATATT
GATACTCCAGATTTATATTGGGCTTACTATAAAGTGTTGGAACCTATTCA
AACATATCCACCGGAATTCTTTGATCAAGAAACTTCTGGTCATAAAACAA
CATTGACAAAAGAAGAAGGTGAACAAGTGGCGAATATGACTTTCAAGAAA
TTATCAAGCTTACATGGAAA Run BLAST on NCBI protein sequence of TCONS_00017958-protein >TCONS_00017958-protein ID=TCONS_00017958-protein|Name=TCONS_00017958-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
STTKFIKSPAILNKNGQRITDIIPGAIVDSWIDFCMFLEVSEFIWHPMLP
EIPFKTNTTSQLHDKEGITDNLYRRIYAYMHVPEDGSYDFKLGSRDGAEV
LIHDTKKLISDLDDIQLSYDRSRETAYLKINAEVIGKLDPEQSKISTEKL
YEIESKDIKMFKNRVYFIEILQGGKMFVKYSFQMKKSGLADESYTVVAAP
SVFHTKLMSSENTPSLIKQKYNPQKIPFKESEKPRLEFYKNEVLRSNELI
EKTNLTCSPPVQKQYIDTPDLYWAYYKVLEPIQTYPPEFFDQETSGHKTT
LTKEEGEQVANMTFKKLSSLHG Run BLAST on NCBI transcript from alignment at sc0000279:193209..194178 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017958 ID=TCONS_00017958|Name=TCONS_00017958|organism=Clytia hemisphaerica|type=transcript|length=970bp|location=Sequence derived from alignment at sc0000279:193209..194178 (Clytia hemisphaerica)
TTTCCATGTAAGCTTGATAATTTCTTGAAAGTCATATTCGCCACTTGTTC
ACCTTCTTCTTTTGTCAATGTTGTTTTATGACCAGAAGTTTCTTGATCAA
AGAATTCCGGTGGATATGTTTGAATAGGTTCCAACACTTTATAGTAAGCC
CAATATAAATCTGGAGTATCAATATATTGTTTTTGAACAGGTGGACTGCA
AGTTAGATTTGTTTTTTCTATTAATTCATTGCTTCGTAAtacttcatttt
tataaaattcaaGTCTTGGTTTTTCTGATTCTTTAAATGGAATTTTTTGT
GggttatatttttgttttataagagaCGGTGTATTTTCGGAAGACATTAA
CTTTGTGTGAAACACGCTTGGAGCTGCAACAACTGTATACGATTCGTCAG
CTAACCCAGATTTCTTCATCTGAAAGCTATACTTGACAAACATCTTACCA
CCTTGTAAAATCTCGATAAAATAAACACGATTTTTAAACATCTTTATGTC
TTTAGATTCAATTTCGTACAACTTTTCTGTAGAAATTTTGCTTTGTTCTG
GATCCAACTTGCCAATAACTTCAGCATTAATTTTCAAATATGCAGTCTCT
CGTGATCTATCATATGATAATTGAATATCGTCTAGATccgaaattaactt
ttttgtatcGTGAATCAGGACCTCGGCACCATCTCTCGACCCTAATTTGA
AGTCGTAAGAGCCATCTTCAGGCACGTGCATATAGGCATAGATTCGGCGA
TAAAGATTATCTGTGATTCCTTCCTTATCATGAAGTTGACTTGTGGTATT
TGTTTTGAATGGAATCTCTGGCAGCATTGGATGCCAAATAAATTCTGAAA
CTTCTAAAAACATACAAAAGTCTATCCAAGAATCGACTATTGCTCCAGGT
ATGATATCAGTGATTCTTTGTCCATTCTTGTTCAAAATAGCTGGGCTTTT
GATGAATTTTGTAGTGCTAC Coding sequence (CDS) from alignment at sc0000279:193209..194178 >TCONS_00017958 ID=TCONS_00017958|Name=TCONS_00017958|organism=Clytia hemisphaerica|type=CDS|length=966bp|location=Sequence derived from alignment at sc0000279:193209..194178 (Clytia hemisphaerica)
TCCATGTAAGCTTGATAATTTCTTGAAAGTCATATTCGCCACTTGTTCAC
CTTCTTCTTTTGTCAATGTTGTTTTATGACCAGAAGTTTCTTGATCAAAG
AATTCCGGTGGATATGTTTGAATAGGTTCCAACACTTTATAGTAAGCCCA
ATATAAATCTGGAGTATCAATATATTGTTTTTGAACAGGTGGACTGCAAG
TTAGATTTGTTTTTTCTATTAATTCATTGCTTCGTAAtacttcattttta
taaaattcaaGTCTTGGTTTTTCTGATTCTTTAAATGGAATTTTTTGTGg
gttatatttttgttttataagagaCGGTGTATTTTCGGAAGACATTAACT
TTGTGTGAAACACGCTTGGAGCTGCAACAACTGTATACGATTCGTCAGCT
AACCCAGATTTCTTCATCTGAAAGCTATACTTGACAAACATCTTACCACC
TTGTAAAATCTCGATAAAATAAACACGATTTTTAAACATCTTTATGTCTT
TAGATTCAATTTCGTACAACTTTTCTGTAGAAATTTTGCTTTGTTCTGGA
TCCAACTTGCCAATAACTTCAGCATTAATTTTCAAATATGCAGTCTCTCG
TGATCTATCATATGATAATTGAATATCGTCTAGATccgaaattaactttt
ttgtatcGTGAATCAGGACCTCGGCACCATCTCTCGACCCTAATTTGAAG
TCGTAAGAGCCATCTTCAGGCACGTGCATATAGGCATAGATTCGGCGATA
AAGATTATCTGTGATTCCTTCCTTATCATGAAGTTGACTTGTGGTATTTG
TTTTGAATGGAATCTCTGGCAGCATTGGATGCCAAATAAATTCTGAAACT
TCTAAAAACATACAAAAGTCTATCCAAGAATCGACTATTGCTCCAGGTAT
GATATCAGTGATTCTTTGTCCATTCTTGTTCAAAATAGCTGGGCTTTTGA
TGAATTTTGTAGTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017958-exon-sc0000279-1491911889:193209..194178 | TCONS_00017958-exon-sc0000279-1491911889:193209..194178 | Clytia hemisphaerica | exon |
| TCONS_00017958-exon-sc0000279-1510915933:193209..194178 | TCONS_00017958-exon-sc0000279-1510915933:193209..194178 | Clytia hemisphaerica | exon |
| TCONS_00017958-exon-sc0000279-1575043694:193209..194178 | TCONS_00017958-exon-sc0000279-1575043694:193209..194178 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000279 | supercontig | sc0000279:193209..194178 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011658 | PA14_dom |
Blast
The following BLAST results are available for this feature:
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