TCONS_00017960 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017960
Unique NameTCONS_00017960
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017960 ID=TCONS_00017960|Name=TCONS_00017960|organism=Clytia hemisphaerica|type=transcript|length=407bp
GCgtagtggcttcactttttcttgcctgggaaaagttagagattctactc
tagccttTCGGGCATCAAATTCAATGATAAATCCTATAAATTAGGCTATT
CACGGGTAAAAAGGGATTTTCTTTCTACCAGAGATATTATCATAAAAACT
CTAATAAACCAGGGGTTCACTTTTAGGTCCAGGTTAATAACCTACAGGAA
CGATGTCACAAATACTGGGtgatgaatttctttgatacaaatttcttttt
gactttgtaGAAGTCAGTATAAGTAATTTAATGGGAAAAACACTGTTATA
AAAGTATAATACAaaaactagtgtatatgtataagaattgcaaagcgatc
caggcaagtcactcgattcacaagttgcaagcaaaatatttatagggtca
cacacta
Run BLAST on NCBI

transcript from alignment at sc0000279:252503..252909

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017960 ID=TCONS_00017960|Name=TCONS_00017960|organism=Clytia hemisphaerica|type=transcript|length=407bp|location=Sequence derived from alignment at sc0000279:252503..252909 (Clytia hemisphaerica)
tagtgtgtgaccctataaatattttgcttgcaacttgtgaatcgagtgac
ttgcctggatcgctttgcaattcttatacatatacactagttttTGTATT
ATACTTTTATAACAGTGTTTTTCCCATTAAATTACTTATACTGACTTCta
caaagtcaaaaagaaatttgtatcaaagaaattcatcaCCCAGTATTTGT
GACATCGTTCCTGTAGGTTATTAACCTGGACCTAAAAGTGAACCCCTGGT
TTATTAGAGTTTTTATGATAATATCTCTGGTAGAAAGAAAATCCCTTTTT
ACCCGTGAATAGCCTAATTTATAGGATTTATCATTGAATTTGATGCCCGA
aaggctagagtagaatctctaacttttcccaggcaagaaaaagtgaagcc
actacGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010072XLOC_010072Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017960-exon-sc0000279-1491911889:252503..252909TCONS_00017960-exon-sc0000279-1491911889:252503..252909Clytia hemisphaericaexon
TCONS_00017960-exon-sc0000279-1510915933:252503..252909TCONS_00017960-exon-sc0000279-1510915933:252503..252909Clytia hemisphaericaexon
TCONS_00017960-exon-sc0000279-1575043694:252503..252909TCONS_00017960-exon-sc0000279-1575043694:252503..252909Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000279supercontigsc0000279:252503..252909 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.179181	0	0	0	0	0.381886	1.15182	2.15665	2.86885	3.74056	0.544602	0.954666	0.476669	0	0.610468	0.109188	0.13451	0.275737	0.190473	0	0.346484	0.507008	0	0.186779	0	0	0.245692	0.262209	0.397753	0.202624
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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