TCONS_00017969 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00017969
Unique Name	TCONS_00017969
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1296

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000282:98554..105809+
coding sequence from alignment at sc0000282:98554..105809+

transcript sequence

>TCONS_00017969 ID=TCONS_00017969|Name=TCONS_00017969|organism=Clytia hemisphaerica|type=transcript|length=1296bp
TCTAGACATCTATTACAAGAACTGTGTGTGGCACAATTTGTCAGTAACAC
AAGCCATCTGTCAACGGAAGAAGGCAAAATGAGGATATTGACAGGCCCTA
ACGCAAGTGGGAAAAGTGTTTATATGAAACAGGTTGGATTGATCGTCTAC
ATGGCGCACATTGGGAGTTTTGTTCCGGCAgtgtcagcaaaaatcagtat
CAAGAGTGGTATTTATACGAGANTCGATGAGTTCGGTAAAGGTACTTCTG
CGactGATGGGTTAGCTCTCTTAGCTTCAGTTTTACAATTTTGGTCTGAT
GAAAACAATCAAAGGCCCATGGTCCTGGTTTCCactcattttcatcaaat
acGGAAAACGGTTTCTCCATCAAGCTATGTTAAATACCAGACACTAGATG
TCATGCATGGAGAGGACGAAGAATTGGTCTTTTTGTACTCTTTGAAAGAA
GGCTATGTTGAATACAGCTATGCAGCTCACGTCGCCCGGTCCGTTGGAAT
ACAGGCTGATATCGTACAACGAGCTAAAGAGATTACAGATTGTATCCTGA
AAGAACAGCCGATCGCGAAGAAAAACCACCCTTACAAACAGAGAGAAGAA
GAAGAactGATCAAAATTGCGGACGAATTTCTGACCATGGATTTGTCGGA
CGAAAATGTCATCGGGTTATTCATACGCCGTCTTTGTGAAGAAATCAACG
AAGCGAGCGCCACGGAAGTAGAAGAGTAACATATATTCCAACgaacaaaa
caaatcaaaggGATTGGTAtgaaagatttcattttcatttgtgaATGGCT
GGGAACATTTGTTACGTTCAGTGCCACCATGAtgcaaatttttaattttt
caaacaaaacattttttgaaaagaaggcAGACAGAAGGGAAAATTCATCT
AGAAAATTTCTCCAAGATTGTTTTAAAATGGCATGAATGTTAAAATGTGG
GCTAAGAAGTTATTATTTCAGTCAAAAGAGTTTCTTGATGATTTCCCGGA
TTTCCCGGATTTAAAGAACGTTATTCTACAAAGTGAAGGACGACGGAAAC
GAATGTTGATGTCGTTTGTCAATGTTCATTCgaatttaaagggacataac
agtacttgagAAATTTGTAAACGGAGCGGATACAACATcgaaacaaatgt
cacatgtcaaaatagaaaatcaaaccaaactttgattgttcaattgtttt
acaagtttgttttggacacgtgattttgattgttctctttaatgaaacgt
ggttcgcgcaatgtttacattttactactttaatgtccctttaata

Run BLAST on NCBI

protein sequence of TCONS_00017969-protein

>TCONS_00017969-protein ID=TCONS_00017969-protein|Name=TCONS_00017969-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
SRHLLQELCVAQFVSNTSHLSTEEGKMRILTGPNASGKSVYMKQVGLIVY
MAHIGSFVPAVSAKISIKSGIYTRXDEFGKGTSATDGLALLASVLQFWSD
ENNQRPMVLVSTHFHQIRKTVSPSSYVKYQTLDVMHGEDEELVFLYSLKE
GYVEYSYAAHVARSVGIQADIVQRAKEITDCILKEQPIAKKNHPYKQREE
EELIKIADEFLTMDLSDENVIGLFIRRLCEEINEASATEVEE

Run BLAST on NCBI

transcript from alignment at sc0000282:98554..105809+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00017969 ID=TCONS_00017969|Name=TCONS_00017969|organism=Clytia hemisphaerica|type=transcript|length=7256bp|location=Sequence derived from alignment at sc0000282:98554..105809+ (Clytia hemisphaerica)
TCTAGACATCTATTACAAGAACTGTGTGTGGCACAATTTGTCAGTAACAC
AAGCCATCTGTCAACGGAAGAAGGCAAAATGAGGATATTGACAGGCCCTA
ACGCAAGTGGGAAAAGTGTTTATATGAAACAGGTCAGTTGGAAAATTGAT
TGTGGTTTTTTATGTTACATTGTCGGGGAAAGTAATGTCGGAGGAAAATG
ACGAAagttttgagggggtgacgaaatctttcgacattttatcacccgtT
TTGCATGGTTTTTCATGTGATATTTTAACCTACTCTCTTATTAATGGCTG
AAATGTCGTAATTTAGtaaaacatgaaaataacaacctcatcggcccttt
ttacgccggccccttttacgccgacccttattacgccacagcctaatttt
gggcttacgccaattagggccgttaataacgccaaaatttgtaaaaatgg
ctacatatgcttcaaattagtaacTAGTGActgaaaatttacattaaaat
gtcattttttagtagtaaactgttgaaaattccatcgaaaatcactgatt
ttcaaatatattaaatatttcactgaagttttaaatattgagtaaaacaa
tggataattttcgtcttcgaatcatacccaaaatcctttaaattgagaaa
taattaacgccgcttttaggttaaaattgcaaaattttggccttttcaac
gctggcccttattacgccaagagcccaaaaaaaaaacgccaataagggcc
ggtgtaaaaaggtcCGATAAGGTATATTAAGGTTTTTGTTTACAGTAGCC
CGCCCGCCTCAGAGaaatattaaaacaaatttttttgccactGTCATGTA
ACTACAATGAaaagtttcaagaattttctgcaACTGTTTCTGactagcaa
ctttttcatcaaattgacactttttgtgtgcttcatttttcaaatgtttt
cggCCCCAGACTATTAGCTTTCCGATTGTCGCTGGATTTAATTGTGGGTG
ATATGGAATGGGAAGGTCCAAGAGTTTCTAGCACAAGaaaacatacacgt
tttttttaagaaactagttttaccaagcagcctcaatgtttcttaagaaa
tcggcctttggagccttaaatgtttcttacatgtttctaaactttttgac
ataatcagcctgcatgcaaagaaaaaaaaacatttgttttgattggaagg
ttcttaaaaaaaccgaattaaaaaatgttattttctcattctcagcctca
gcatgtttcttagatgtttcttagtttttaggtattctgagcctcatgtt
tcttaaaagtgtgtttcttaaaaaaataaatgtatgATCACTTTAACCGC
TTAACTTATACTCGCGAAATTATGCAAATGATTAGGTGACCGTCATCAAT
TTCTTTAACTTTCAGGTTGGATTGATCGTCTACATGGCGCACATTGGGAG
TTTTGTTCCGGCAgtgtcagcaaaaatcagtatCAAGAGTGGTATTTATA
CGAGANTCGATGAGTTCGGTAAAGGTACTTCTGCGGTATGTTTTCCTTTg
tctttttctgaccaatcaaATTCTTTCTAATTCATTGTAATAAAATAGAC
AATTAAAGTTATGATTCAAAAAACATCTCGACGACTTCTATACgcactga
tgatgttttttattaaaacgaAAAGCTTATGCTAAAAAATATTTGTCGAA
ATGGGCAATATTCATGATTGATATCTGTGGTCGCATGCCCAAACCTTCCG
CTAGTGTAGTAGTTGGTGGATTCCAAAACACTATCAATGTGGAGATGGAT
TTCTCCCAATTCACCGTCTGTGACCAGTCAGTAGACAATAATTCACTTCC
AGCTCTACCGAGTTGCATTTGAGTCCTCGGGTTCCACATGGACCCGTACc
tcaatggtagagcaaatgGCCGCGAATGacatggttgtgagttcgagttt
cgtcggatccgttggttttccaacggttctagtggctggtcagaaaacaa
tatgagagcgactgtattcacttcatttgtcgaaaaatgtttttttgaat
cATATCtttctaatttaataattctagtattaaaaaataaattgctggtt
caacaggggggggggtcaagtaTTTAGTACATTTATGTACATCTAGTACa
tgaccgtagtacagtggtagagcatccggctacggttcgcaaggttgtgg
gttcaacccacagccgggtcataccaaagattcccaaaaatggtacttga
tgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAgtgtcagcaaaaatca
gtatCAAGAGTGGTATTTATACAAGGATTCACACACGAGAAACTGTCTCT
GTACCTTTGTCCACCTTCATGATTGATTTGAATCAGGTAAGTGCGGCCAG
AAAAAAGCGagtatgtatttgcacttttgaggacagtTGGAgggactgaa
gcgatttggaataacccgcagttttgacccgcgaGTTCGAGCGCGttaaa
aatgctgatttaccgttgtcctcagctggtcaggatctagtcaagaTAGA
ACCTTACCGTCCCTTCGCAGAAAAACGCACATACGGTAAAGTGTGCGGGA
AGGGTGGTAGTTTTTTGGTAAGTGTGGCCAGAGAAAGCGTGCGGGAAGTG
GTGGTAGTTTTGTCTGACCAGGATAAGGCATAGGGCCTGAACAGTCGCAC
ATCAGACATTGTCCGACcagaaaattataattttcaattttttaatacaa
aattaAGCATTGGAAACCAACGTTATGTCCGTGTAGAATATGTAAAGTGT
ATATCGATGGTGTTGGCTTTATTTAAGAACTATGTAAATAGGTTGACTTG
TATTAGCCTAGTAGCTATTTGTTTTTATGTCAACGATAAATAACAATTAC
AGACAAACCAACAGCACTACCCCCGCCTCAAAGATGTGTACTCTTAAACG
GGGGTGGGGGGTTCGANagctatcgaaagaggagccttcgggtcgcttcc
gactgcggtcgcagacttactacttactacATGAACCCAGGACACtttca
acagggggggggggtcaagcagaaCCAATGATTCTTTCTACGGTGATGAT
CTATCTTCATGACCCAGTGTACTAACTACCAAAAATCGAGCTTTTTTGGC
AAAAGAAATGGGGGTGgtgtaaattgaaatttgacCTAAAAATCAGTTAA
TACATTGTGTACTAAGTGAAAAGGCGTGGTGGTCcttttcaaaattatca
aaaatcagTCAGTACTCATAGTTTTCCAGagtaactgcttgacccccctg
GTCTCAATGTTATTGATATTTGGATTCTGGAAGCAACAAGGTTAAGATTT
ACTACCTGCTACCAAGAAAAGGTTTCCTCAGCTTTAGGAAAACCTTGTTT
CttcttgtttaaatttttttttggacgtTTTGAAGCCTTCCACCCTTTAA
TTTATCAATCTTAAccctcaaactttctttctatagactGATGGGTTAGC
TCTCTTAGCTTCAGTTTTACAATTTTGGTCTGATGAAAACAATCAAAGGC
CCATGGTCCTGGTTTCCactcattttcatcaaatacGGAAAACGGTTTCT
CCATCAAGCTATGTTAAATACCAGGTAAATATACAAAGCTTAATCTATTT
TCTTATTGGTTACTCCTCTCGCCTTAGGCTCGTTTTCGATTCCTTTGACT
ATTTTTGTTTACCAGCCGGTACACCCAACCTATTTTTGTTGCCATTTTCT
AGCTTTGTTCCTCATCTGGGGTACCTATTTCCACTACAATCGGAGCAACT
ATTACTTCCTAGAGCCTGTCCTAGCTTTtgttccaacctactttagagtc
GGTATAATGATTGTTTTATAcacaaaaaaagacatttttatctttgtaca
tatttttaaaacgAAAAGTTGTTGTTATTATATTTTTAGCTTTATATATA
CCAATAATGTtaatggtgataaaagagaagtaaaaaaaaaaaaaagctct
TTTATAatcgggtagctcagtcggtagagcattcgccttacaatccaagg
gttgtgggttcgatccctggtcatcgccaactcagcggatgagtagctta
tattgggtaatctgatctacgTGGTAAGaataggtgtggcgctccatcTC
GGCGCTCGATCTCCTAGGTCCAGCACAAATAGCAAAAAGGATAGGCTCTC
TCAACCCCGGCTCTGTCGACAATCACCAATTTAATATACTTGTGATATAC
TTCCTGATAAACCCTGCAGACTTCTATGCAAATATGTTTGTTTTTTGGAA
GCTGCGCTATTTATACTTTGCCTGGCAATATATCACCTTAAAATATATGC
CAATTCCTTTAGCCAAGTAGCAAAGCCCTAGGATATCCTTTCTTGATTAG
TTCTTCCGCACCGATTTTATTTTACCTTGAATATCCACTGCTTTGACAGA
CAATAGATGTCATGCTTTTTTACCTCGATTATCTACTTTGCTTTGACAGA
TACTAGATGTCATGTTTTTTTACCTCGATTATCTACTTTGCTTTGACAGA
cactagatgtcgtgctttttTACCTTGAATATCCACTTTGCTTTGACAGA
CACTAGATGTCATGTTTTTTTACCTTGGTTATCCACTTTGCTTTGACAGA
CACTAGATGTCATGCATGGAGAGGACGAAGAATTGGTCTTTTTGTACTCT
TTGAAAGAAGGCTATGTTGAATACAGCTATGCAGCTCACGTCGCCCGGTC
CGTTGGAATACAGGCTGATATCGTACAACGAGCTAAAGAGGTAAACACAT
TTTAAATAGTGAGGCTAGTCAGTCCGCTCACTTCGCTCAGTTGGTCAGGA
TACGTAATACGTTGagggaattaattttagtgGAAACTATTTTTGGCGGT
CTAAAAAAATGTggaaattgcatttcgcgggatttaaattttcgcggttt
tgctcTTTTGGACACATTCctaattttttgatgaaaattggcaaaatttg
tAATTTGCCGTTTCCAATTTTCGCAGATATGCCAATAAACTgcgaaaaaa
acgaaaattagtTCTGATATTGTACAGCGGGAAACGGGGTAAAGTTTTAA
CGGATCAATCACCTCCAAAATTATTATATCTAGGTTTTAGCATAGGAAGT
TTCGAAAAATCCCTCGGAAACTAGCGAAACTTCAGATTACTGATTTTATT
TATAAAGAAAGAACACTGACCCACCAGACAAATTCTCTCATTTCAGATTA
CAGATTGTATACTGAAAGAACACTGACCCACCTGACAAATTCTCTCATTT
CAGATTACAGATTGTATACTGAAAGAACACTGACCCATTGGACAAATTCT
CTCATTTCAGATTACAGATTGTATACTGAAAGAACACTGACCCATTGGAC
AAATTCTCTCATTTCAGATTACAGATTGTATACTGAAAGAACACTGACCC
ATTGGACAAATTCTCTCATTTCAGATTACAGATTGTATACTGAAAGAACA
CTGACCCACCGGACAAATTCTCTCATTTCAGATTACAGATTGTATCCTGA
AAGAACAGCCGATCGCGAAGAAAAACCACCCTTACAAACAGAGAGAAGAA
GAAGAGTGAGTAAAGCTTACGTCAAATTTTTCTTCGTGAACGACTTCGAC
ATTTTTGCGAACAACCTCTTTGAAGcagaacagaaaaatatttttcccga
AGAAACTTCGACACTTTGCTTAAAAATTCGCTACTTTTCCCCTGTTAAGG
TTTCCTAACTCTATACAATAAGATTATACGGGCAATCTAAAATTTCCATG
CTAACTAAAGTTGTAACGAGCGTCTCAGAATAACTCTATTTGAACAACTA
GACGATTTTCACAAATCAAAAAATACCCTTCCTCGGAATTTTTATTCCGT
TAGTGGTCGAAACCCATTTTAGTTGCCGTAACCCCACCTTTTGCGTGCTG
AAACTTATCGTTAGCTCTCCAAACTGCATCTTCAACAGTCGAAGCCCAAC
TTTTTCGGcccaaatctgtccaaaaacgccaaccgcccataaattttgct
ccacccatccgcccattgaagaaactttttgacttttttttacttttatt
tgactttttgacatttttctaagaatttttgactttttttttgagttttt
gactttatttttgacttttttgactttttttttgactttttgtagaggtg
tacgataatttttcgagtgatttacccctcgaaattttcaaacacattat
gcttttctttttcagactGATCAAAATTGCGGACGAATTTCTGACCATGG
ATTTGTCGGACGAAAATGTCATCGGGTTATTCATACGCCGTCTTTGTGAA
GAAATCAACGAAGCGAGCGCCACGGAAGTAGAAGAGTAACATATATTCCA
ACgaacaaaacaaatcaaaggGATTGGTAtgaaagatttcattttcattt
gtgaATGGCTGGGAACATTTGTTACGTTCAGTGCCACCATGAtgcaaatt
tttaatttttcaaacaaaacattttttgaaaagaaggcAGACAGAAGGGA
AAATTCATCTAGAAAATTTCTCCAAGATTGTTTTAAAATGGCATGAATGT
TAAAATGTGGGCTAAGAAGTTATTATTTCAGTCAAAAGAGTTTCTTGATG
ATTTCCCGGATTTCCCGGATTTAAAGAACGTTATTCTACAAAGTGAAGGA
CGACGGAAACGAATGTTGATGTCGTTTGTCAATGTTCATTCgaatttaaa
gggacataacagtacttgagAAATTTGTAAACGGAGCGGATACAACATcg
aaacaaatgtcacatgtcaaaatagaaaatcaaaccaaactttgattgtt
caattgttttacaagtttgttttggacacgtgattttgattgttctcttt
aatgaaacgtggttcgcgcaatgtttacattttactactttaatgtccct
ttaata

Coding sequence (CDS) from alignment at sc0000282:98554..105809+

>TCONS_00017969 ID=TCONS_00017969|Name=TCONS_00017969|organism=Clytia hemisphaerica|type=CDS|length=4374bp|location=Sequence derived from alignment at sc0000282:98554..105809+ (Clytia hemisphaerica)
TCTAGACATCTATTACAAGAACTGTGTGTGGCACAATTTGTCAGTAACAC
AAGCCATCTGTCAACGGAAGAAGGCAAAATGAGGATATTGACAGGCCCTA
ACGCAAGTGGGAAAAGTGTTTATATGAAACAGGTTGGATTGATCGTCTAC
ATGGCGCACATTGGGAGTTTTGTTCCGGCAgtgtcagcaaaaatcagtat
CAAGAGTGGTATTTATACGAGANTCGATGAGTTCGGTAAAGGTACTTCTG
CGactGATGGGTTAGCTCTCTTAGCTTCAGTTTTACAATTTTGGTCTGAT
GAAAACAATCAAAGGCCCATGGTCCTGGTTTCCactcattttcatcaaat
acGGAAAACGGTTTCTCCATCAAGCTATGTTAAATACCAGACACTAGATG
TCATGCATGGAGAGGACGAAGAATTGGTCTTTTTGTACTCTTTGAAAGAA
GGCTATGTTGAATACAGCTATGCAGCTCACGTCGCCCGGTCCGTTGGAAT
ACAGGCTGATATCGTACAACGAGCTAAAGAGATTACAGATTGTATCCTGA
AAGAACAGCCGATCGCGAAGAAAAACCACCCTTACAAACAGAGAGAAGAA
GAAGAactGATCAAAATTGCGGACGAATTTCTGACCATGGATTTGTCGGA
CGAAAATGTCATCGGGTTATTCATACGCCGTCTTTGTGAAGAAATCAACG
AAGCGAGCGCCACGGAAGTAGAAGAGTAATCTAGACATCTATTACAAGAA
CTGTGTGTGGCACAATTTGTCAGTAACACAAGCCATCTGTCAACGGAAGA
AGGCAAAATGAGGATATTGACAGGCCCTAACGCAAGTGGGAAAAGTGTTT
ATATGAAACAGGTTGGATTGATCGTCTACATGGCGCACATTGGGAGTTTT
GTTCCGGCAgtgtcagcaaaaatcagtatCAAGAGTGGTATTTATACGAG
ANTCGATGAGTTCGGTAAAGGTACTTCTGCGactGATGGGTTAGCTCTCT
TAGCTTCAGTTTTACAATTTTGGTCTGATGAAAACAATCAAAGGCCCATG
GTCCTGGTTTCCactcattttcatcaaatacGGAAAACGGTTTCTCCATC
AAGCTATGTTAAATACCAGACACTAGATGTCATGCATGGAGAGGACGAAG
AATTGGTCTTTTTGTACTCTTTGAAAGAAGGCTATGTTGAATACAGCTAT
GCAGCTCACGTCGCCCGGTCCGTTGGAATACAGGCTGATATCGTACAACG
AGCTAAAGAGATTACAGATTGTATCCTGAAAGAACAGCCGATCGCGAAGA
AAAACCACCCTTACAAACAGAGAGAAGAAGAAGAactGATCAAAATTGCG
GACGAATTTCTGACCATGGATTTGTCGGACGAAAATGTCATCGGGTTATT
CATACGCCGTCTTTGTGAAGAAATCAACGAAGCGAGCGCCACGGAAGTAG
AAGAGTAATCTAGACATCTATTACAAGAACTGTGTGTGGCACAATTTGTC
AGTAACACAAGCCATCTGTCAACGGAAGAAGGCAAAATGAGGATATTGAC
AGGCCCTAACGCAAGTGGGAAAAGTGTTTATATGAAACAGGTTGGATTGA
TCGTCTACATGGCGCACATTGGGAGTTTTGTTCCGGCAgtgtcagcaaaa
atcagtatCAAGAGTGGTATTTATACGAGANTCGATGAGTTCGGTAAAGG
TACTTCTGCGactGATGGGTTAGCTCTCTTAGCTTCAGTTTTACAATTTT
GGTCTGATGAAAACAATCAAAGGCCCATGGTCCTGGTTTCCactcatttt
catcaaatacGGAAAACGGTTTCTCCATCAAGCTATGTTAAATACCAGAC
ACTAGATGTCATGCATGGAGAGGACGAAGAATTGGTCTTTTTGTACTCTT
TGAAAGAAGGCTATGTTGAATACAGCTATGCAGCTCACGTCGCCCGGTCC
GTTGGAATACAGGCTGATATCGTACAACGAGCTAAAGAGATTACAGATTG
TATCCTGAAAGAACAGCCGATCGCGAAGAAAAACCACCCTTACAAACAGA
GAGAAGAAGAAGAactGATCAAAATTGCGGACGAATTTCTGACCATGGAT
TTGTCGGACGAAAATGTCATCGGGTTATTCATACGCCGTCTTTGTGAAGA
AATCAACGAAGCGAGCGCCACGGAAGTAGAAGAGTAATCTAGACATCTAT
TACAAGAACTGTGTGTGGCACAATTTGTCAGTAACACAAGCCATCTGTCA
ACGGAAGAAGGCAAAATGAGGATATTGACAGGCCCTAACGCAAGTGGGAA
AAGTGTTTATATGAAACAGGTTGGATTGATCGTCTACATGGCGCACATTG
GGAGTTTTGTTCCGGCAgtgtcagcaaaaatcagtatCAAGAGTGGTATT
TATACGAGANTCGATGAGTTCGGTAAAGGTACTTCTGCGactGATGGGTT
AGCTCTCTTAGCTTCAGTTTTACAATTTTGGTCTGATGAAAACAATCAAA
GGCCCATGGTCCTGGTTTCCactcattttcatcaaatacGGAAAACGGTT
TCTCCATCAAGCTATGTTAAATACCAGACACTAGATGTCATGCATGGAGA
GGACGAAGAATTGGTCTTTTTGTACTCTTTGAAAGAAGGCTATGTTGAAT
ACAGCTATGCAGCTCACGTCGCCCGGTCCGTTGGAATACAGGCTGATATC
GTACAACGAGCTAAAGAGATTACAGATTGTATCCTGAAAGAACAGCCGAT
CGCGAAGAAAAACCACCCTTACAAACAGAGAGAAGAAGAAGAactGATCA
AAATTGCGGACGAATTTCTGACCATGGATTTGTCGGACGAAAATGTCATC
GGGTTATTCATACGCCGTCTTTGTGAAGAAATCAACGAAGCGAGCGCCAC
GGAAGTAGAAGAGTAATCTAGACATCTATTACAAGAACTGTGTGTGGCAC
AATTTGTCAGTAACACAAGCCATCTGTCAACGGAAGAAGGCAAAATGAGG
ATATTGACAGGCCCTAACGCAAGTGGGAAAAGTGTTTATATGAAACAGGT
TGGATTGATCGTCTACATGGCGCACATTGGGAGTTTTGTTCCGGCAgtgt
cagcaaaaatcagtatCAAGAGTGGTATTTATACGAGANTCGATGAGTTC
GGTAAAGGTACTTCTGCGactGATGGGTTAGCTCTCTTAGCTTCAGTTTT
ACAATTTTGGTCTGATGAAAACAATCAAAGGCCCATGGTCCTGGTTTCCa
ctcattttcatcaaatacGGAAAACGGTTTCTCCATCAAGCTATGTTAAA
TACCAGACACTAGATGTCATGCATGGAGAGGACGAAGAATTGGTCTTTTT
GTACTCTTTGAAAGAAGGCTATGTTGAATACAGCTATGCAGCTCACGTCG
CCCGGTCCGTTGGAATACAGGCTGATATCGTACAACGAGCTAAAGAGATT
ACAGATTGTATCCTGAAAGAACAGCCGATCGCGAAGAAAAACCACCCTTA
CAAACAGAGAGAAGAAGAAGAactGATCAAAATTGCGGACGAATTTCTGA
CCATGGATTTGTCGGACGAAAATGTCATCGGGTTATTCATACGCCGTCTT
TGTGAAGAAATCAACGAAGCGAGCGCCACGGAAGTAGAAGAGTAATCTAG
ACATCTATTACAAGAACTGTGTGTGGCACAATTTGTCAGTAACACAAGCC
ATCTGTCAACGGAAGAAGGCAAAATGAGGATATTGACAGGCCCTAACGCA
AGTGGGAAAAGTGTTTATATGAAACAGGTTGGATTGATCGTCTACATGGC
GCACATTGGGAGTTTTGTTCCGGCAgtgtcagcaaaaatcagtatCAAGA
GTGGTATTTATACGAGANTCGATGAGTTCGGTAAAGGTACTTCTGCGact
GATGGGTTAGCTCTCTTAGCTTCAGTTTTACAATTTTGGTCTGATGAAAA
CAATCAAAGGCCCATGGTCCTGGTTTCCactcattttcatcaaatacGGA
AAACGGTTTCTCCATCAAGCTATGTTAAATACCAGACACTAGATGTCATG
CATGGAGAGGACGAAGAATTGGTCTTTTTGTACTCTTTGAAAGAAGGCTA
TGTTGAATACAGCTATGCAGCTCACGTCGCCCGGTCCGTTGGAATACAGG
CTGATATCGTACAACGAGCTAAAGAGATTACAGATTGTATCCTGAAAGAA
CAGCCGATCGCGAAGAAAAACCACCCTTACAAACAGAGAGAAGAAGAAGA
actGATCAAAATTGCGGACGAATTTCTGACCATGGATTTGTCGGACGAAA
ATGTCATCGGGTTATTCATACGCCGTCTTTGTGAAGAAATCAACGAAGCG
AGCGCCACGGAAGTAGAAGAGTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010078	XLOC_010078	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00017969-protein	TCONS_00017969-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000282	supercontig	sc0000282:98554..105809 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.38003	1.47364	2.24137	2.71128	0.108982	0.127559	0.324421	0.707196	0.7265	1.09717	1.19457	0.457218	0.513527	0.473881	0.567938	0.494154	0.624546	0.418615	0.206817	0.471978	0.544068	0.729738	1.0157	1.07718	7.43734	9.79099	0.574407	0.827282	1.21828	1.07163

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000432	DNA_mismatch_repair_MutS_C
IPR027417	P-loop_NTPase

Vocabulary: **Biological Process**
Term	Definition
GO:0006298	mismatch repair

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0030983	mismatched DNA binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006298	mismatch repair
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030983	mismatched DNA binding

Blast

[Close]

BLAST of TCONS_00017969 vs. Swiss-Prot (Human)
Match: MSH5 (MutS protein homolog 5 OS=Homo sapiens GN=MSH5 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.630e-43
Identity = 89/256 (34.77%), Postives = 135/256 (52.73%), Query Frame = 1

Query:    4 RHLLQELCVAQFVSNTSHLSTEEGKMRILTGPNASGKSVYMKQVGLIVYMAHIGSFVPAVSAKISIKSGIYTRX-----------------------------------DEFGKGTSATDGLALLASVLQFWSDENNQRPMVLVSTHFHQI--RKTVSPSSYVKYQTLDVMHGEDEELVFLYSLKEGYVEYSYAAHVARSVGIQADIVQRAKEITDCILKEQPIAKKNHPYKQREEEELIKIADEFLTMDLSDENV 660
            RH L ELC   FV N++    ++G+++++TGPN+SGKS+Y+KQVGLI +MA +GSFVPA  A+I     I+TR                                    DEFGKGT+  DGLALLA+VL+ W       P + V+T+F  +   + +     V+Y T++    +  +LVF Y + EG  + S+A+H A   G+   +V R KE++D I   +PI       K+ + E    + D+F+ +DL D N+
Sbjct:  562 RHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQYLTMETCE-DGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDPNL 816

The following BLAST results are available for this feature:

BLAST of TCONS_00017969 vs. Swiss-Prot (Human)

BLAST of TCONS_00017969 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MSH5	2.630e-43	34.77	MutS protein homolog 5 OS=Homo sapiens GN=MSH5 PE=...	[more]

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TCONS_00017969 (transcript) - C. hemisphaerica