TCONS_00017971 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017971
Unique NameTCONS_00017971
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length555

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017971 ID=TCONS_00017971|Name=TCONS_00017971|organism=Clytia hemisphaerica|type=transcript|length=555bp
AGACATCTATTACAAGAACTGTGTGTGGCACAATTTGTCAGTAACACAAG
CCATCTGTCAACGGAAGAAGGCAAAATGAGGATATTGACAGGCCCTAACG
CAAGTGGGAAAAGTGTTTATATGAAACAGGTTGGATTGATCGTCTACATG
GCGCACATTGGGAGTTTTGTTCCGGCAgtgtcagcaaaaatcagtatCAA
GAGTGGTATTTATACGAGANTCGATGAGTTCGGTAAAGGTACTTCTGCGa
ctGATGGGTTAGCTCTCTTAGCTTCAGTTTTACAATTTTGGTCTGATGAA
AACAATCAAAGGCCCATGGTCCTGGTTTCCactcattttcatcaaatacG
GAAAACGGTTTCTCCATCAAGCTATGTTAAATACCAGACACTAGATGTCA
TGCATGGAGAGGACGAAGAATTGGTCTTTTTGTACTCTTTGAAAGAAGGC
TATGTTGAATACAGCTATGCAGCTCACGTCGCCCGGTCCGTTGGAATACA
GGCTGATATCGTACAACGAGCTAAAGAGATTACAGATTGTATACTGAAAG
AACAC
Run BLAST on NCBI

transcript from alignment at sc0000282:98557..104126+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017971 ID=TCONS_00017971|Name=TCONS_00017971|organism=Clytia hemisphaerica|type=transcript|length=5570bp|location=Sequence derived from alignment at sc0000282:98557..104126+ (Clytia hemisphaerica)
AGACATCTATTACAAGAACTGTGTGTGGCACAATTTGTCAGTAACACAAG
CCATCTGTCAACGGAAGAAGGCAAAATGAGGATATTGACAGGCCCTAACG
CAAGTGGGAAAAGTGTTTATATGAAACAGGTCAGTTGGAAAATTGATTGT
GGTTTTTTATGTTACATTGTCGGGGAAAGTAATGTCGGAGGAAAATGACG
AAagttttgagggggtgacgaaatctttcgacattttatcacccgtTTTG
CATGGTTTTTCATGTGATATTTTAACCTACTCTCTTATTAATGGCTGAAA
TGTCGTAATTTAGtaaaacatgaaaataacaacctcatcggcccttttta
cgccggccccttttacgccgacccttattacgccacagcctaattttggg
cttacgccaattagggccgttaataacgccaaaatttgtaaaaatggcta
catatgcttcaaattagtaacTAGTGActgaaaatttacattaaaatgtc
attttttagtagtaaactgttgaaaattccatcgaaaatcactgattttc
aaatatattaaatatttcactgaagttttaaatattgagtaaaacaatgg
ataattttcgtcttcgaatcatacccaaaatcctttaaattgagaaataa
ttaacgccgcttttaggttaaaattgcaaaattttggccttttcaacgct
ggcccttattacgccaagagcccaaaaaaaaaacgccaataagggccggt
gtaaaaaggtcCGATAAGGTATATTAAGGTTTTTGTTTACAGTAGCCCGC
CCGCCTCAGAGaaatattaaaacaaatttttttgccactGTCATGTAACT
ACAATGAaaagtttcaagaattttctgcaACTGTTTCTGactagcaactt
tttcatcaaattgacactttttgtgtgcttcatttttcaaatgttttcgg
CCCCAGACTATTAGCTTTCCGATTGTCGCTGGATTTAATTGTGGGTGATA
TGGAATGGGAAGGTCCAAGAGTTTCTAGCACAAGaaaacatacacgtttt
ttttaagaaactagttttaccaagcagcctcaatgtttcttaagaaatcg
gcctttggagccttaaatgtttcttacatgtttctaaactttttgacata
atcagcctgcatgcaaagaaaaaaaaacatttgttttgattggaaggttc
ttaaaaaaaccgaattaaaaaatgttattttctcattctcagcctcagca
tgtttcttagatgtttcttagtttttaggtattctgagcctcatgtttct
taaaagtgtgtttcttaaaaaaataaatgtatgATCACTTTAACCGCTTA
ACTTATACTCGCGAAATTATGCAAATGATTAGGTGACCGTCATCAATTTC
TTTAACTTTCAGGTTGGATTGATCGTCTACATGGCGCACATTGGGAGTTT
TGTTCCGGCAgtgtcagcaaaaatcagtatCAAGAGTGGTATTTATACGA
GANTCGATGAGTTCGGTAAAGGTACTTCTGCGGTATGTTTTCCTTTgtct
ttttctgaccaatcaaATTCTTTCTAATTCATTGTAATAAAATAGACAAT
TAAAGTTATGATTCAAAAAACATCTCGACGACTTCTATACgcactgatga
tgttttttattaaaacgaAAAGCTTATGCTAAAAAATATTTGTCGAAATG
GGCAATATTCATGATTGATATCTGTGGTCGCATGCCCAAACCTTCCGCTA
GTGTAGTAGTTGGTGGATTCCAAAACACTATCAATGTGGAGATGGATTTC
TCCCAATTCACCGTCTGTGACCAGTCAGTAGACAATAATTCACTTCCAGC
TCTACCGAGTTGCATTTGAGTCCTCGGGTTCCACATGGACCCGTACctca
atggtagagcaaatgGCCGCGAATGacatggttgtgagttcgagtttcgt
cggatccgttggttttccaacggttctagtggctggtcagaaaacaatat
gagagcgactgtattcacttcatttgtcgaaaaatgtttttttgaatcAT
ATCtttctaatttaataattctagtattaaaaaataaattgctggttcaa
caggggggggggtcaagtaTTTAGTACATTTATGTACATCTAGTACatga
ccgtagtacagtggtagagcatccggctacggttcgcaaggttgtgggtt
caacccacagccgggtcataccaaagattcccaaaaatggtacttgatgN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAgtgtcagcaaaaatcagta
tCAAGAGTGGTATTTATACAAGGATTCACACACGAGAAACTGTCTCTGTA
CCTTTGTCCACCTTCATGATTGATTTGAATCAGGTAAGTGCGGCCAGAAA
AAAGCGagtatgtatttgcacttttgaggacagtTGGAgggactgaagcg
atttggaataacccgcagttttgacccgcgaGTTCGAGCGCGttaaaaat
gctgatttaccgttgtcctcagctggtcaggatctagtcaagaTAGAACC
TTACCGTCCCTTCGCAGAAAAACGCACATACGGTAAAGTGTGCGGGAAGG
GTGGTAGTTTTTTGGTAAGTGTGGCCAGAGAAAGCGTGCGGGAAGTGGTG
GTAGTTTTGTCTGACCAGGATAAGGCATAGGGCCTGAACAGTCGCACATC
AGACATTGTCCGACcagaaaattataattttcaattttttaatacaaaat
taAGCATTGGAAACCAACGTTATGTCCGTGTAGAATATGTAAAGTGTATA
TCGATGGTGTTGGCTTTATTTAAGAACTATGTAAATAGGTTGACTTGTAT
TAGCCTAGTAGCTATTTGTTTTTATGTCAACGATAAATAACAATTACAGA
CAAACCAACAGCACTACCCCCGCCTCAAAGATGTGTACTCTTAAACGGGG
GTGGGGGGTTCGANagctatcgaaagaggagccttcgggtcgcttccgac
tgcggtcgcagacttactacttactacATGAACCCAGGACACtttcaaca
gggggggggggtcaagcagaaCCAATGATTCTTTCTACGGTGATGATCTA
TCTTCATGACCCAGTGTACTAACTACCAAAAATCGAGCTTTTTTGGCAAA
AGAAATGGGGGTGgtgtaaattgaaatttgacCTAAAAATCAGTTAATAC
ATTGTGTACTAAGTGAAAAGGCGTGGTGGTCcttttcaaaattatcaaaa
atcagTCAGTACTCATAGTTTTCCAGagtaactgcttgacccccctgGTC
TCAATGTTATTGATATTTGGATTCTGGAAGCAACAAGGTTAAGATTTACT
ACCTGCTACCAAGAAAAGGTTTCCTCAGCTTTAGGAAAACCTTGTTTCtt
cttgtttaaatttttttttggacgtTTTGAAGCCTTCCACCCTTTAATTT
ATCAATCTTAAccctcaaactttctttctatagactGATGGGTTAGCTCT
CTTAGCTTCAGTTTTACAATTTTGGTCTGATGAAAACAATCAAAGGCCCA
TGGTCCTGGTTTCCactcattttcatcaaatacGGAAAACGGTTTCTCCA
TCAAGCTATGTTAAATACCAGGTAAATATACAAAGCTTAATCTATTTTCT
TATTGGTTACTCCTCTCGCCTTAGGCTCGTTTTCGATTCCTTTGACTATT
TTTGTTTACCAGCCGGTACACCCAACCTATTTTTGTTGCCATTTTCTAGC
TTTGTTCCTCATCTGGGGTACCTATTTCCACTACAATCGGAGCAACTATT
ACTTCCTAGAGCCTGTCCTAGCTTTtgttccaacctactttagagtcGGT
ATAATGATTGTTTTATAcacaaaaaaagacatttttatctttgtacatat
ttttaaaacgAAAAGTTGTTGTTATTATATTTTTAGCTTTATATATACCA
ATAATGTtaatggtgataaaagagaagtaaaaaaaaaaaaaagctctTTT
ATAatcgggtagctcagtcggtagagcattcgccttacaatccaagggtt
gtgggttcgatccctggtcatcgccaactcagcggatgagtagcttatat
tgggtaatctgatctacgTGGTAAGaataggtgtggcgctccatcTCGGC
GCTCGATCTCCTAGGTCCAGCACAAATAGCAAAAAGGATAGGCTCTCTCA
ACCCCGGCTCTGTCGACAATCACCAATTTAATATACTTGTGATATACTTC
CTGATAAACCCTGCAGACTTCTATGCAAATATGTTTGTTTTTTGGAAGCT
GCGCTATTTATACTTTGCCTGGCAATATATCACCTTAAAATATATGCCAA
TTCCTTTAGCCAAGTAGCAAAGCCCTAGGATATCCTTTCTTGATTAGTTC
TTCCGCACCGATTTTATTTTACCTTGAATATCCACTGCTTTGACAGACAA
TAGATGTCATGCTTTTTTACCTCGATTATCTACTTTGCTTTGACAGATAC
TAGATGTCATGTTTTTTTACCTCGATTATCTACTTTGCTTTGACAGAcac
tagatgtcgtgctttttTACCTTGAATATCCACTTTGCTTTGACAGACAC
TAGATGTCATGTTTTTTTACCTTGGTTATCCACTTTGCTTTGACAGACAC
TAGATGTCATGCATGGAGAGGACGAAGAATTGGTCTTTTTGTACTCTTTG
AAAGAAGGCTATGTTGAATACAGCTATGCAGCTCACGTCGCCCGGTCCGT
TGGAATACAGGCTGATATCGTACAACGAGCTAAAGAGGTAAACACATTTT
AAATAGTGAGGCTAGTCAGTCCGCTCACTTCGCTCAGTTGGTCAGGATAC
GTAATACGTTGagggaattaattttagtgGAAACTATTTTTGGCGGTCTA
AAAAAATGTggaaattgcatttcgcgggatttaaattttcgcggttttgc
tcTTTTGGACACATTCctaattttttgatgaaaattggcaaaatttgtAA
TTTGCCGTTTCCAATTTTCGCAGATATGCCAATAAACTgcgaaaaaaacg
aaaattagtTCTGATATTGTACAGCGGGAAACGGGGTAAAGTTTTAACGG
ATCAATCACCTCCAAAATTATTATATCTAGGTTTTAGCATAGGAAGTTTC
GAAAAATCCCTCGGAAACTAGCGAAACTTCAGATTACTGATTTTATTTAT
AAAGAAAGAACACTGACCCACCAGACAAATTCTCTCATTTCAGATTACAG
ATTGTATACTGAAAGAACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010078XLOC_010078Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017971-exon-sc0000282-1491911889:98557..98685TCONS_00017971-exon-sc0000282-1491911889:98557..98685Clytia hemisphaericaexon
TCONS_00017971-exon-sc0000282-1510915933:98557..98685TCONS_00017971-exon-sc0000282-1510915933:98557..98685Clytia hemisphaericaexon
TCONS_00017971-exon-sc0000282-1575043694:98557..98685TCONS_00017971-exon-sc0000282-1575043694:98557..98685Clytia hemisphaericaexon
TCONS_00017971-exon-sc0000282-1491911889:99969..100088TCONS_00017971-exon-sc0000282-1491911889:99969..100088Clytia hemisphaericaexon
TCONS_00017971-exon-sc0000282-1510915933:99969..100088TCONS_00017971-exon-sc0000282-1510915933:99969..100088Clytia hemisphaericaexon
TCONS_00017971-exon-sc0000282-1575043694:99969..100088TCONS_00017971-exon-sc0000282-1575043694:99969..100088Clytia hemisphaericaexon
TCONS_00017971-exon-sc0000282-1491911889:102340..102477TCONS_00017971-exon-sc0000282-1491911889:102340..102477Clytia hemisphaericaexon
TCONS_00017971-exon-sc0000282-1510915933:102340..102477TCONS_00017971-exon-sc0000282-1510915933:102340..102477Clytia hemisphaericaexon
TCONS_00017971-exon-sc0000282-1575043694:102340..102477TCONS_00017971-exon-sc0000282-1575043694:102340..102477Clytia hemisphaericaexon
TCONS_00017971-exon-sc0000282-1491911889:103503..103643TCONS_00017971-exon-sc0000282-1491911889:103503..103643Clytia hemisphaericaexon
TCONS_00017971-exon-sc0000282-1510915933:103503..103643TCONS_00017971-exon-sc0000282-1510915933:103503..103643Clytia hemisphaericaexon
TCONS_00017971-exon-sc0000282-1575043694:103503..103643TCONS_00017971-exon-sc0000282-1575043694:103503..103643Clytia hemisphaericaexon
TCONS_00017971-exon-sc0000282-1491911889:104100..104126TCONS_00017971-exon-sc0000282-1491911889:104100..104126Clytia hemisphaericaexon
TCONS_00017971-exon-sc0000282-1510915933:104100..104126TCONS_00017971-exon-sc0000282-1510915933:104100..104126Clytia hemisphaericaexon
TCONS_00017971-exon-sc0000282-1575043694:104100..104126TCONS_00017971-exon-sc0000282-1575043694:104100..104126Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000282supercontigsc0000282:98557..104126 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0637303	0	0	0.120795	0	0.164144	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00017971 vs. Swiss-Prot (Human)
Match: MSH5 (MutS protein homolog 5 OS=Homo sapiens GN=MSH5 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.320e-39
Identity = 79/218 (36.24%), Postives = 117/218 (53.67%), Query Frame = 1 
Query:    1 RHLLQELCVAQFVSNTSHLSTEEGKMRILTGPNASGKSVYMKQVGLIVYMAHIGSFVPAVSAKISIKSGIYTRX-----------------------------------DEFGKGTSATDGLALLASVLQFWSDENNQRPMVLVSTHFHQI--RKTVSPSSYVKYQTLDVMHGEDEELVFLYSLKEGYVEYSYAAHVARSVGIQADIVQRAKEITDCI 543
            RH L ELC   FV N++    ++G+++++TGPN+SGKS+Y+KQVGLI +MA +GSFVPA  A+I     I+TR                                    DEFGKGT+  DGLALLA+VL+ W       P + V+T+F  +   + +     V+Y T++    +  +LVF Y + EG  + S+A+H A   G+   +V R KE++D I
Sbjct:  562 RHPLMELCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGPLVQYLTMETCE-DGNDLVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVSDLI 778
The following BLAST results are available for this feature:
BLAST of TCONS_00017971 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSH51.320e-3936.24MutS protein homolog 5 OS=Homo sapiens GN=MSH5 PE=... [more]
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