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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017974 ID=TCONS_00017974|Name=TCONS_00017974|organism=Clytia hemisphaerica|type=transcript|length=1128bp
CCGAAACAAAAAGAATGTTTTCTTGAGAATTAATTATGCTAATTGAAGAA
AGAGTAATTGGAGTTTCGAAGTGCGGCTAATGGTATCGGGGGAGTAATTC
AAtatttatttagatttatttGAATTGTGCATGCAtccattttgattatt
ttatatTACTGGTGGCGCTTTGAATATCACCGTGTTCGAAACAAGGAAGA
AAATATTGACTATTTTTTTACTTCCTTCATGGTATTGAGGTATAATTCAA
CAAACTAATCAAGATTTAGTATCcattttgattttactcgttTGATATTC
TTTGACTGAAAGGTGGGATACTGACTATTCCATTATTTATGAATATCACC
GTATCACCACCCAAGGAAGAAGATTTTAACCATTTATCACACAGATTTTT
GTCCGAAAATTAAGAACTTGTTTATAAATCGGACACGCCAAAATGAAAGT
CATACTCGTATTATGTTGCTTAGCAACAATCTATAGAGCGTTGTTGGCCA
GTCCGGCAGCCTTCAAAGTATTGTCCCAATTTATCGACCAAAACAATGGA
GATgaaactgatgacgtcaccgGATTGAAATTAActaaaactgatgacgt
cattaaagaAAATGGTGGTGATGAAAAAGACAGTGATAGAAAAGAACTtg
gtaaaaatgaagatgaaaaattagaATTTCATCATTTCGAAACAGACAAT
GAGAAATCAGAAGAATTAGTAGAAAAACCGAAAGAATCTTCGCTTAAAAA
CGaggctgatgacgtcatcttttcAAGATTACGGTTACCGATATTTGACA
ATGTGAAGGAGAACCAGACGTTTAACACTCTCCTTCCAGGAGATGTTGAA
GTCAACGTGACAGTTCTTAGTGTTTCGCCCTTCATATTTGAGGTTGATGG
GTTACTCGATCCCGAAGAATGCGATCTTTTGGTTGCCATAGCGAAAGGGA
AAGGCATGAAAAGCGTACGTCAGCATATGTCCCCGTTGAAGACGAACGGT
GGAGCGGAAAGATTATTGAGGGATTGGGATTATAATCAAGACGGATTCAT
ATCACATGAtgaggtttgttttgatttctccCTCCGAAGAAGAGTCTCTT
AGTTAAAAGTTTTTGTATAAGGTTGTAA Run BLAST on NCBI protein sequence of TCONS_00017974-protein >TCONS_00017974-protein ID=TCONS_00017974-protein|Name=TCONS_00017974-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MKVILVLCCLATIYRALLASPAAFKVLSQFIDQNNGDETDDVTGLKLTKT
DDVIKENGGDEKDSDRKELGKNEDEKLEFHHFETDNEKSEELVEKPKESS
LKNEADDVIFSRLRLPIFDNVKENQTFNTLLPGDVEVNVTVLSVSPFIFE
VDGLLDPEECDLLVAIAKGKGMKSVRQHMSPLKTNGGAERLLRDWDYNQD
GFISHDEVCFDFSLRRRVS Run BLAST on NCBI transcript from alignment at sc0000282:120494..122988+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017974 ID=TCONS_00017974|Name=TCONS_00017974|organism=Clytia hemisphaerica|type=transcript|length=2495bp|location=Sequence derived from alignment at sc0000282:120494..122988+ (Clytia hemisphaerica)
CCGAAACAAAAAGAATGTTTTCTTGAGAATTAATTATGCTAATTGAAGAA
AGAGTAATTGGAGTTTCGAAGTGCGGCTAATGGTATCGGGGGAGTAATTC
AAtatttatttagatttatttGAATTGTGCATGCAtccattttgattatt
ttatatTACTGGTGGCGCTTTGAATATCACCGTGTTCGAAACAAGGAAGA
AAATATTGACTATTTTTTTACTTCCTTCATGGTATTGAGGTATAATTCAA
CAAACTAATCAAGATTTAGTATCcattttgattttactcgttTGATATTC
TTTGACTGAAAGGTGGGATACTGACTATTCCATTATTTATGAATATCACC
GTATCACCACCCAAGGAAGAAGATTTTAACCATTTATCACACAGATTTTT
GTCCGAAAATTAAGAACTTGTTTATAAATCGGACACGCCAAAATGAAAGT
CATACTCGTATTATGTTGCTTAGCAACAATCTATAGAGCGTTGTTGGCCA
GTCCGGCAGCCTTCAAAGTATTGTCCCAATTTATCGACCAAAACAATGGA
GATgaaactgatgacgtcaccgGATTGAAATTAActaaaactgatgacgt
cattaaagaAAATGGTGGTGATGAAAAAGACAGTGATAGAAAAGAACTtg
gtaaaaatgaagatgaaaaattagaATTTCATCATTTCGAAACAGACAAT
GAGAAATCAGAAGAATTAGTAGAAAAACCGAAAGAATCTTCGCTTAAAAA
CGaggctgatgacgtcatcttttcAAGATTACGGTTACCGATATTTGACA
ATGTGAAGGAGAACCAGACGTTTAACACTCTCCTTCCAGGAGATGTTGAA
GTCAACGTGACAGTTCTTAGTGTTTCGCCCTTCATATTTGGTAAGAAGTT
TTGATCCGCtcttttcttttaagaacaaaTAAATCTAAGACTGAGACTCC
GGTGatcttatatttttttcacCATGTTCTTAGTACGCTTGCCATATTGA
CTTATAGCTTAAAAGGGGCTTAAAAATCCAGATGTTTCTGAAATGTGTAA
CTGTGATTGGTTTGAATTTATCCTTGGTGCTTCGAAAAACCTAATAAAGC
CTACGAAAGTTTTtcaggaaaaatattttaagttaCTTCTTTACCCTGAC
TCTTCTGCAAGTAAGAGTCTCTTTTTCACGAATCTCCGAACCAGTATATT
TTCCATCAAGACCATCTTACAGATATCATTTTCCTTTCCACACTAGATCG
GATAACTGCTCAcatatttttcgtgaaattgTATCCAGTTGTTAAACTGA
CTATTCCGCCATATTGTTTTCCCTTTTACGTCAGATTTTTGAacgtttca
atttcaaaatatttgaaaagcaCTTTTGATGGTAAACAGAATTGAAAACG
AAATGGCGGACTAGTCGGCTCCAACGGCCACATTTCCTATAACAGGAAGC
CCGATCCGGCTAACTCATAGATATCATTACGCCACCTCGGGTCACAAAGG
TTTCCCAGCTGCTTTATTCAAGACATCTTCCTCTGTCTATTAGGCACGCA
AGTGAAGAGGCTTCAGTTTATgctatctatatattaataaaTAAACTTGT
CTCCTGACGTTTGTTCTCGTTGGTTTCATTATAACAAATTCCTGCTTGat
taaactttaaattttcttgCATTTCCAGAGGTTGATGGGTTACTCGATCC
CGAAGAATGCGATCTTTTGGTTGCCATAGCGAAAGGGAAAGGCATGAAAA
GCGTACGTCAGCATATGTCCCCGTTGAAGACGAACGGTGGAGCGGAAAGA
TTATTGAGGGATTGGGATTATAATCAAGACGGATTCATATCACATGAcga
ggtttgttttgatttctccCTCCGAAGAAGGGTCTCTTAGTTAAAAGTTC
CCGTATAAGGTTGTAAGTAAACTCCTCCTTTGGGATTATGATCAAGACGG
ATTCATATCACATGAtgaggtttgttttgatttctccCTCCGAAGAAGGG
TCTCTTAGTTAAAAGTTCCCGTATAAGGTTGTAAGTAAACTCCTACTTTG
GGATTATAATCAAGACAGATTCATATCACATGATGAGGTTAGTTTTGATT
TCTCCCTCCGAAGAAGAGTCTCTTAGTTAAAAGTTTTTGTATAAGGTTGT
AAGTAAACTCCTACTTTGGGATTATAATCAAGACAGATTCATATCACATG
ATGAGGTTAGTTTTGATTTCTCCCTCCGAAGAAGAATCTCTTAGTTAAAA
GTTTTTGTATAAGGTTGCAAGTAAACTCCTACTTTGGGATTATAATCAAG
ACAGATTCATATCACATGATGAGGTTAGTTTTGATTTCTCCCTCCGAAGA
AGGGTCTCTTAGTTAAAAGTTTCCGTAAAAGGTTGTAAGAAAACTCCTAC
TTTGGGACGGATTTTATATCACATGAtgaggtttgttttgatttctccCT
CCGAAGAAGAGTCTCTTAGTTAAAAGTTTTTGTATAAGGTTGTAA Coding sequence (CDS) from alignment at sc0000282:120494..122988+ >TCONS_00017974 ID=TCONS_00017974|Name=TCONS_00017974|organism=Clytia hemisphaerica|type=CDS|length=1980bp|location=Sequence derived from alignment at sc0000282:120494..122988+ (Clytia hemisphaerica)
ATGAAAGTCATACTCGTATTATGTTGCTTAGCAACAATCTATAGAGCGTT
GTTGGCCAGTCCGGCAGCCTTCAAAGTATTGTCCCAATTTATCGACCAAA
ACAATGGAGATgaaactgatgacgtcaccgGATTGAAATTAActaaaact
gatgacgtcattaaagaAAATGGTGGTGATGAAAAAGACAGTGATAGAAA
AGAACTtggtaaaaatgaagatgaaaaattagaATTTCATCATTTCGAAA
CAGACAATGAGAAATCAGAAGAATTAGTAGAAAAACCGAAAGAATCTTCG
CTTAAAAACGaggctgatgacgtcatcttttcAAGATTACGGTTACCGAT
ATTTGACAATGTGAAGGAGAACCAGACGTTTAACACTCTCCTTCCAGGAG
ATGTTGAAGTCAACGTGACAGTTCTTAGTGTTTCGCCCTTCATATTTGAG
GTTGATGGGTTACTCGATCCCGAAGAATGCGATCTTTTGGTTGCCATAGC
GAAAGGGAAAGGCATGAAAAGCGTACGTCAGCATATGTCCCCGTTGAAGA
CGAACGGTGGAGCGGAAAGATTATTGAGGGATTGGGATTATAATCAAGAC
GGATTCATATCACATGAtgaggtttgttttgatttctccCTCCGAAGAAG
AGTCTCTTAGATGAAAGTCATACTCGTATTATGTTGCTTAGCAACAATCT
ATAGAGCGTTGTTGGCCAGTCCGGCAGCCTTCAAAGTATTGTCCCAATTT
ATCGACCAAAACAATGGAGATgaaactgatgacgtcaccgGATTGAAATT
AActaaaactgatgacgtcattaaagaAAATGGTGGTGATGAAAAAGACA
GTGATAGAAAAGAACTtggtaaaaatgaagatgaaaaattagaATTTCAT
CATTTCGAAACAGACAATGAGAAATCAGAAGAATTAGTAGAAAAACCGAA
AGAATCTTCGCTTAAAAACGaggctgatgacgtcatcttttcAAGATTAC
GGTTACCGATATTTGACAATGTGAAGGAGAACCAGACGTTTAACACTCTC
CTTCCAGGAGATGTTGAAGTCAACGTGACAGTTCTTAGTGTTTCGCCCTT
CATATTTGAGGTTGATGGGTTACTCGATCCCGAAGAATGCGATCTTTTGG
TTGCCATAGCGAAAGGGAAAGGCATGAAAAGCGTACGTCAGCATATGTCC
CCGTTGAAGACGAACGGTGGAGCGGAAAGATTATTGAGGGATTGGGATTA
TAATCAAGACGGATTCATATCACATGAtgaggtttgttttgatttctccC
TCCGAAGAAGAGTCTCTTAGATGAAAGTCATACTCGTATTATGTTGCTTA
GCAACAATCTATAGAGCGTTGTTGGCCAGTCCGGCAGCCTTCAAAGTATT
GTCCCAATTTATCGACCAAAACAATGGAGATgaaactgatgacgtcaccg
GATTGAAATTAActaaaactgatgacgtcattaaagaAAATGGTGGTGAT
GAAAAAGACAGTGATAGAAAAGAACTtggtaaaaatgaagatgaaaaatt
agaATTTCATCATTTCGAAACAGACAATGAGAAATCAGAAGAATTAGTAG
AAAAACCGAAAGAATCTTCGCTTAAAAACGaggctgatgacgtcatcttt
tcAAGATTACGGTTACCGATATTTGACAATGTGAAGGAGAACCAGACGTT
TAACACTCTCCTTCCAGGAGATGTTGAAGTCAACGTGACAGTTCTTAGTG
TTTCGCCCTTCATATTTGAGGTTGATGGGTTACTCGATCCCGAAGAATGC
GATCTTTTGGTTGCCATAGCGAAAGGGAAAGGCATGAAAAGCGTACGTCA
GCATATGTCCCCGTTGAAGACGAACGGTGGAGCGGAAAGATTATTGAGGG
ATTGGGATTATAATCAAGACGGATTCATATCACATGAtgaggtttgtttt
gatttctccCTCCGAAGAAGAGTCTCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017974-exon-sc0000282-1491911889:120494..121383 | TCONS_00017974-exon-sc0000282-1491911889:120494..121383 | Clytia hemisphaerica | exon |
| TCONS_00017974-exon-sc0000282-1510915933:120494..121383 | TCONS_00017974-exon-sc0000282-1510915933:120494..121383 | Clytia hemisphaerica | exon |
| TCONS_00017974-exon-sc0000282-1575043694:120494..121383 | TCONS_00017974-exon-sc0000282-1575043694:120494..121383 | Clytia hemisphaerica | exon |
| TCONS_00017974-exon-sc0000282-1491911889:122172..122336 | TCONS_00017974-exon-sc0000282-1491911889:122172..122336 | Clytia hemisphaerica | exon |
| TCONS_00017974-exon-sc0000282-1510915933:122172..122336 | TCONS_00017974-exon-sc0000282-1510915933:122172..122336 | Clytia hemisphaerica | exon |
| TCONS_00017974-exon-sc0000282-1575043694:122172..122336 | TCONS_00017974-exon-sc0000282-1575043694:122172..122336 | Clytia hemisphaerica | exon |
| TCONS_00017974-exon-sc0000282-1491911889:122916..122988 | TCONS_00017974-exon-sc0000282-1491911889:122916..122988 | Clytia hemisphaerica | exon |
| TCONS_00017974-exon-sc0000282-1510915933:122916..122988 | TCONS_00017974-exon-sc0000282-1510915933:122916..122988 | Clytia hemisphaerica | exon |
| TCONS_00017974-exon-sc0000282-1575043694:122916..122988 | TCONS_00017974-exon-sc0000282-1575043694:122916..122988 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000282 | supercontig | sc0000282:120494..122988 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR018247 | EF_Hand_1_Ca_BS |
Blast
The following BLAST results are available for this feature:
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